data_2QUR # _model_server_result.job_id MfezET7a54YUf50HexUmOw _model_server_result.datetime_utc '2024-10-12 15:30:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qur # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 2QUR # _exptl.entry_id 2QUR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QUR _cell.length_a 57.56 _cell.length_b 78.5 _cell.length_c 100.63 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QUR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 196 A TRP 196 1_555 A N TPO 197 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C TPO 197 A TPO 197 1_555 A N LEU 198 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C VAL 337 A VAL 337 1_555 A N SEP 338 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C SEP 338 A SEP 338 1_555 A N ILE 339 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2QUR _atom_sites.fract_transf_matrix[1][1] 0.017373 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009937 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADP B 1 1 1 ADP ADP . D 4 HOH A 1 501 501 HOH HOH . D 4 HOH A 2 502 502 HOH HOH . D 4 HOH A 3 503 503 HOH HOH . D 4 HOH A 4 505 505 HOH HOH . D 4 HOH A 5 506 506 HOH HOH . D 4 HOH A 6 507 507 HOH HOH . D 4 HOH A 7 508 508 HOH HOH . D 4 HOH A 8 509 509 HOH HOH . D 4 HOH A 9 510 510 HOH HOH . D 4 HOH A 10 511 511 HOH HOH . D 4 HOH A 11 512 512 HOH HOH . D 4 HOH A 12 513 513 HOH HOH . D 4 HOH A 13 514 514 HOH HOH . D 4 HOH A 14 515 515 HOH HOH . D 4 HOH A 15 516 516 HOH HOH . D 4 HOH A 16 517 517 HOH HOH . D 4 HOH A 17 518 518 HOH HOH . D 4 HOH A 18 519 519 HOH HOH . D 4 HOH A 19 520 520 HOH HOH . D 4 HOH A 20 521 521 HOH HOH . D 4 HOH A 21 522 522 HOH HOH . D 4 HOH A 22 523 523 HOH HOH . D 4 HOH A 23 524 524 HOH HOH . E 4 HOH B 1 504 504 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 25.209 8.353 34.47 1 77.46 ? PB ADP 1 B 1 HETATM 2 O O1B ADP . . . C 3 25.33 7.914 33.046 1 76.59 ? O1B ADP 1 B 1 HETATM 3 O O2B ADP . . . C 3 24.151 9.406 34.557 1 76.35 ? O2B ADP 1 B 1 HETATM 4 O O3B ADP . . . C 3 26.629 8.954 34.959 1 76.74 ? O3B ADP 1 B 1 HETATM 5 P PA ADP . . . C 3 25.799 6.701 36.627 1 75.59 ? PA ADP 1 B 1 HETATM 6 O O1A ADP . . . C 3 27.158 6.374 36.093 1 74.74 ? O1A ADP 1 B 1 HETATM 7 O O2A ADP . . . C 3 25.888 7.829 37.59 1 75.74 ? O2A ADP 1 B 1 HETATM 8 O O3A ADP . . . C 3 24.774 7.071 35.395 1 77.02 ? O3A ADP 1 B 1 HETATM 9 O O5' ADP . . . C 3 25.223 5.437 37.401 1 73.69 ? O5' ADP 1 B 1 HETATM 10 C C5' ADP . . . C 3 23.934 5.498 38.005 1 70.67 ? C5' ADP 1 B 1 HETATM 11 C C4' ADP . . . C 3 23.007 4.47 37.382 1 68.71 ? C4' ADP 1 B 1 HETATM 12 O O4' ADP . . . C 3 21.767 4.462 38.136 1 67.92 ? O4' ADP 1 B 1 HETATM 13 C C3' ADP . . . C 3 22.579 4.739 35.946 1 67.03 ? C3' ADP 1 B 1 HETATM 14 O O3' ADP . . . C 3 23.514 4.188 35.03 1 67.72 ? O3' ADP 1 B 1 HETATM 15 C C2' ADP . . . C 3 21.222 4.046 35.86 1 66.11 ? C2' ADP 1 B 1 HETATM 16 O O2' ADP . . . C 3 21.31 2.649 35.653 1 66.14 ? O2' ADP 1 B 1 HETATM 17 C C1' ADP . . . C 3 20.669 4.282 37.264 1 65.52 ? C1' ADP 1 B 1 HETATM 18 N N9 ADP . . . C 3 19.763 5.423 37.422 1 63.92 ? N9 ADP 1 B 1 HETATM 19 C C8 ADP . . . C 3 20.064 6.763 37.483 1 62.77 ? C8 ADP 1 B 1 HETATM 20 N N7 ADP . . . C 3 19.021 7.53 37.677 1 62.92 ? N7 ADP 1 B 1 HETATM 21 C C5 ADP . . . C 3 17.958 6.64 37.737 1 61.51 ? C5 ADP 1 B 1 HETATM 22 C C6 ADP . . . C 3 16.581 6.826 37.934 1 60.15 ? C6 ADP 1 B 1 HETATM 23 N N6 ADP . . . C 3 16.014 8.016 38.117 1 58.68 ? N6 ADP 1 B 1 HETATM 24 N N1 ADP . . . C 3 15.796 5.732 37.938 1 60.19 ? N1 ADP 1 B 1 HETATM 25 C C2 ADP . . . C 3 16.363 4.536 37.761 1 60.27 ? C2 ADP 1 B 1 HETATM 26 N N3 ADP . . . C 3 17.641 4.23 37.574 1 61.56 ? N3 ADP 1 B 1 HETATM 27 C C4 ADP . . . C 3 18.398 5.341 37.571 1 62.76 ? C4 ADP 1 B 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #