data_2QUZ
#
_model_server_result.job_id            lxZ7AO13CDPjDfIb4W1Pmg 
_model_server_result.datetime_utc      '2025-08-31 14:23:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2quz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":180}' 
#
_entry.id    2QUZ 
#
_exptl.entry_id    2QUZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              443.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2QUZ 
_cell.length_a            92.1 
_cell.length_b            92.1 
_cell.length_c            116.3 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2QUZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 17 A SER 17 1_555 B MG MG . A MG 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc2 C O3B GDP . A GDP 180 1_555 B MG MG . A MG 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc3 B MG MG . A MG 273 1_555 D O HOH . A HOH 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc4 B MG MG . A MG 273 1_555 D O HOH . A HOH 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc5 B MG MG . A MG 273 1_555 D O HOH . A HOH 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc6 B MG MG . A MG 273 1_555 D O HOH . A HOH 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
#
_chem_comp.formula           'C10 H15 N5 O11 P2' 
_chem_comp.formula_weight    443.201 
_chem_comp.id                GDP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B GDP doub 83 n n 
PB O2B GDP sing 84 n n 
PB O3B GDP sing 85 n n 
PB O3A GDP sing 86 n n 
O2B HOB2 GDP sing 87 n n 
O3B HOB3 GDP sing 88 n n 
O3A PA GDP sing 89 n n 
PA O1A GDP doub 90 n n 
PA O2A GDP sing 91 n n 
PA O5' GDP sing 92 n n 
O2A HOA2 GDP sing 93 n n 
O5' C5' GDP sing 94 n n 
C5' C4' GDP sing 95 n n 
C5' H5' GDP sing 96 n n 
C5' "H5''" GDP sing 97 n n 
C4' O4' GDP sing 98 n n 
C4' C3' GDP sing 99 n n 
C4' H4' GDP sing 100 n n 
O4' C1' GDP sing 101 n n 
C3' O3' GDP sing 102 n n 
C3' C2' GDP sing 103 n n 
C3' H3' GDP sing 104 n n 
O3' HO3' GDP sing 105 n n 
C2' O2' GDP sing 106 n n 
C2' C1' GDP sing 107 n n 
C2' H2' GDP sing 108 n n 
O2' HO2' GDP sing 109 n n 
C1' N9 GDP sing 110 n n 
C1' H1' GDP sing 111 n n 
N9 C8 GDP sing 112 n y 
N9 C4 GDP sing 113 n y 
C8 N7 GDP doub 114 n y 
C8 H8 GDP sing 115 n n 
N7 C5 GDP sing 116 n y 
C5 C6 GDP sing 117 n n 
C5 C4 GDP doub 118 n y 
C6 O6 GDP doub 119 n n 
C6 N1 GDP sing 120 n n 
N1 C2 GDP sing 121 n n 
N1 HN1 GDP sing 122 n n 
C2 N2 GDP sing 123 n n 
C2 N3 GDP doub 124 n n 
N2 HN21 GDP sing 125 n n 
N2 HN22 GDP sing 126 n n 
N3 C4 GDP sing 127 n n 
#
_atom_sites.entry_id                     2QUZ 
_atom_sites.fract_transf_matrix[1][1]    0.010858 
_atom_sites.fract_transf_matrix[1][2]    0.006269 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012537 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008598 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 273 273 MG MG . 
C 3 GDP A 1 180 180 GDP GDP . 
D 4 HOH A 1 274 1 HOH HOH . 
D 4 HOH A 2 275 2 HOH HOH . 
D 4 HOH A 3 276 3 HOH HOH . 
D 4 HOH A 4 277 4 HOH HOH . 
D 4 HOH A 5 278 5 HOH HOH . 
D 4 HOH A 6 279 6 HOH HOH . 
D 4 HOH A 7 280 7 HOH HOH . 
D 4 HOH A 8 281 8 HOH HOH . 
D 4 HOH A 9 282 10 HOH HOH . 
D 4 HOH A 10 283 11 HOH HOH . 
D 4 HOH A 11 284 12 HOH HOH . 
D 4 HOH A 12 285 13 HOH HOH . 
D 4 HOH A 13 286 14 HOH HOH . 
D 4 HOH A 14 287 15 HOH HOH . 
D 4 HOH A 15 288 16 HOH HOH . 
D 4 HOH A 16 289 17 HOH HOH . 
D 4 HOH A 17 290 18 HOH HOH . 
D 4 HOH A 18 291 19 HOH HOH . 
D 4 HOH A 19 292 20 HOH HOH . 
D 4 HOH A 20 293 21 HOH HOH . 
D 4 HOH A 21 294 22 HOH HOH . 
D 4 HOH A 22 295 23 HOH HOH . 
D 4 HOH A 23 296 24 HOH HOH . 
D 4 HOH A 24 297 26 HOH HOH . 
D 4 HOH A 25 298 27 HOH HOH . 
D 4 HOH A 26 299 28 HOH HOH . 
D 4 HOH A 27 300 29 HOH HOH . 
D 4 HOH A 28 301 30 HOH HOH . 
D 4 HOH A 29 302 31 HOH HOH . 
D 4 HOH A 30 303 32 HOH HOH . 
D 4 HOH A 31 304 34 HOH HOH . 
D 4 HOH A 32 305 35 HOH HOH . 
D 4 HOH A 33 306 36 HOH HOH . 
D 4 HOH A 34 307 37 HOH HOH . 
D 4 HOH A 35 308 39 HOH HOH . 
D 4 HOH A 36 309 40 HOH HOH . 
D 4 HOH A 37 310 41 HOH HOH . 
D 4 HOH A 38 311 44 HOH HOH . 
D 4 HOH A 39 312 45 HOH HOH . 
D 4 HOH A 40 313 46 HOH HOH . 
D 4 HOH A 41 314 47 HOH HOH . 
D 4 HOH A 42 315 48 HOH HOH . 
D 4 HOH A 43 316 50 HOH HOH . 
D 4 HOH A 44 317 51 HOH HOH . 
D 4 HOH A 45 318 53 HOH HOH . 
D 4 HOH A 46 319 54 HOH HOH . 
D 4 HOH A 47 320 58 HOH HOH . 
D 4 HOH A 48 321 60 HOH HOH . 
D 4 HOH A 49 322 62 HOH HOH . 
D 4 HOH A 50 323 63 HOH HOH . 
D 4 HOH A 51 324 65 HOH HOH . 
D 4 HOH A 52 325 69 HOH HOH . 
D 4 HOH A 53 326 70 HOH HOH . 
D 4 HOH A 54 327 71 HOH HOH . 
D 4 HOH A 55 328 73 HOH HOH . 
D 4 HOH A 56 329 74 HOH HOH . 
D 4 HOH A 57 330 75 HOH HOH . 
D 4 HOH A 58 331 76 HOH HOH . 
D 4 HOH A 59 332 77 HOH HOH . 
D 4 HOH A 60 333 78 HOH HOH . 
D 4 HOH A 61 334 79 HOH HOH . 
D 4 HOH A 62 335 80 HOH HOH . 
D 4 HOH A 63 336 81 HOH HOH . 
D 4 HOH A 64 337 84 HOH HOH . 
D 4 HOH A 65 338 85 HOH HOH . 
D 4 HOH A 66 339 87 HOH HOH . 
D 4 HOH A 67 340 88 HOH HOH . 
D 4 HOH A 68 341 90 HOH HOH . 
D 4 HOH A 69 342 93 HOH HOH . 
D 4 HOH A 70 343 94 HOH HOH . 
D 4 HOH A 71 344 95 HOH HOH . 
D 4 HOH A 72 345 96 HOH HOH . 
D 4 HOH A 73 346 99 HOH HOH . 
D 4 HOH A 74 347 101 HOH HOH . 
D 4 HOH A 75 348 102 HOH HOH . 
D 4 HOH A 76 349 108 HOH HOH . 
D 4 HOH A 77 350 109 HOH HOH . 
D 4 HOH A 78 351 110 HOH HOH . 
D 4 HOH A 79 352 111 HOH HOH . 
D 4 HOH A 80 353 112 HOH HOH . 
D 4 HOH A 81 354 113 HOH HOH . 
D 4 HOH A 82 355 116 HOH HOH . 
D 4 HOH A 83 356 117 HOH HOH . 
D 4 HOH A 84 357 118 HOH HOH . 
D 4 HOH A 85 358 121 HOH HOH . 
D 4 HOH A 86 359 124 HOH HOH . 
D 4 HOH A 87 360 127 HOH HOH . 
D 4 HOH A 88 361 128 HOH HOH . 
D 4 HOH A 89 362 133 HOH HOH . 
D 4 HOH A 90 363 134 HOH HOH . 
D 4 HOH A 91 364 136 HOH HOH . 
D 4 HOH A 92 365 140 HOH HOH . 
D 4 HOH A 93 366 142 HOH HOH . 
D 4 HOH A 94 367 143 HOH HOH . 
D 4 HOH A 95 368 149 HOH HOH . 
D 4 HOH A 96 369 151 HOH HOH . 
D 4 HOH A 97 370 152 HOH HOH . 
D 4 HOH A 98 371 153 HOH HOH . 
D 4 HOH A 99 372 154 HOH HOH . 
D 4 HOH A 100 373 156 HOH HOH . 
D 4 HOH A 101 374 157 HOH HOH . 
D 4 HOH A 102 375 158 HOH HOH . 
D 4 HOH A 103 376 159 HOH HOH . 
D 4 HOH A 104 377 160 HOH HOH . 
D 4 HOH A 105 378 161 HOH HOH . 
D 4 HOH A 106 379 162 HOH HOH . 
D 4 HOH A 107 380 163 HOH HOH . 
D 4 HOH A 108 381 165 HOH HOH . 
D 4 HOH A 109 382 166 HOH HOH . 
D 4 HOH A 110 383 167 HOH HOH . 
D 4 HOH A 111 384 168 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB GDP . . . C 3 -7.382 14.106 20.228 1 12.82 ? PB GDP 180 A 1 
HETATM 2 O O1B GDP . . . C 3 -6.265 14.213 21.251 1 13.91 ? O1B GDP 180 A 1 
HETATM 3 O O2B GDP . . . C 3 -7.035 13.099 19.145 1 16.21 ? O2B GDP 180 A 1 
HETATM 4 O O3B GDP . . . C 3 -7.753 15.465 19.646 1 13.12 ? O3B GDP 180 A 1 
HETATM 5 O O3A GDP . . . C 3 -8.634 13.558 21.048 1 14.02 ? O3A GDP 180 A 1 
HETATM 6 P PA GDP . . . C 3 -10.188 13.909 20.89 1 14.3 ? PA GDP 180 A 1 
HETATM 7 O O1A GDP . . . C 3 -10.558 13.677 19.439 1 15.95 ? O1A GDP 180 A 1 
HETATM 8 O O2A GDP . . . C 3 -10.528 15.27 21.436 1 15.8 ? O2A GDP 180 A 1 
HETATM 9 O O5' GDP . . . C 3 -10.867 12.813 21.859 1 15.05 ? O5' GDP 180 A 1 
HETATM 10 C C5' GDP . . . C 3 -10.633 11.412 21.648 1 15.32 ? C5' GDP 180 A 1 
HETATM 11 C C4' GDP . . . C 3 -11.835 10.661 22.196 1 15.72 ? C4' GDP 180 A 1 
HETATM 12 O O4' GDP . . . C 3 -11.861 10.803 23.613 1 15.32 ? O4' GDP 180 A 1 
HETATM 13 C C3' GDP . . . C 3 -13.161 11.226 21.723 1 17.18 ? C3' GDP 180 A 1 
HETATM 14 O O3' GDP . . . C 3 -14.076 10.135 21.524 1 21.11 ? O3' GDP 180 A 1 
HETATM 15 C C2' GDP . . . C 3 -13.643 12.113 22.847 1 18.23 ? C2' GDP 180 A 1 
HETATM 16 O O2' GDP . . . C 3 -15.061 12.121 22.976 1 24.67 ? O2' GDP 180 A 1 
HETATM 17 C C1' GDP . . . C 3 -13.098 11.374 24.03 1 14.37 ? C1' GDP 180 A 1 
HETATM 18 N N9 GDP . . . C 3 -12.765 12.274 25.144 1 12.23 ? N9 GDP 180 A 1 
HETATM 19 C C8 GDP . . . C 3 -11.917 13.314 25.093 1 12.56 ? C8 GDP 180 A 1 
HETATM 20 N N7 GDP . . . C 3 -11.808 13.896 26.3 1 11.99 ? N7 GDP 180 A 1 
HETATM 21 C C5 GDP . . . C 3 -12.595 13.184 27.138 1 11.55 ? C5 GDP 180 A 1 
HETATM 22 C C6 GDP . . . C 3 -12.947 13.217 28.57 1 12.6 ? C6 GDP 180 A 1 
HETATM 23 O O6 GDP . . . C 3 -12.459 14.077 29.345 1 13.27 ? O6 GDP 180 A 1 
HETATM 24 N N1 GDP . . . C 3 -13.808 12.295 29.033 1 13.39 ? N1 GDP 180 A 1 
HETATM 25 C C2 GDP . . . C 3 -14.354 11.325 28.26 1 11.34 ? C2 GDP 180 A 1 
HETATM 26 N N2 GDP . . . C 3 -15.214 10.45 28.822 1 13.99 ? N2 GDP 180 A 1 
HETATM 27 N N3 GDP . . . C 3 -14.086 11.232 26.942 1 11.25 ? N3 GDP 180 A 1 
HETATM 28 C C4 GDP . . . C 3 -13.22 12.105 26.38 1 12.26 ? C4 GDP 180 A 1 
#
_model_server_stats.io_time_ms              4 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           28 
#