data_2QVN
#
_model_server_result.job_id            Hid8NqVgIl0U0XYEf-EkAA 
_model_server_result.datetime_utc      '2025-01-31 21:10:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2qvn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":500}' 
#
_entry.id    2QVN 
#
_exptl.entry_id    2QVN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              283.241 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GUANOSINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2QVN 
_cell.length_a            144.548 
_cell.length_b            146.922 
_cell.length_c            50.453 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2QVN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLN 31 A GLN 23 1_555 A N MSE 32 A MSE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C MSE 32 A MSE 24 1_555 A N SER 33 A SER 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 A C LEU 131 A LEU 123 1_555 A N MSE 132 A MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 A C MSE 132 A MSE 124 1_555 A N GLU 133 A GLU 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 A C LEU 175 A LEU 167 1_555 A N MSE 176 A MSE 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 A C MSE 176 A MSE 168 1_555 A N CYS 177 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale7 A C ASP 273 A ASP 265 1_555 A N MSE 274 A MSE 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale8 A C MSE 274 A MSE 266 1_555 A N VAL 275 A VAL 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale9 A C SER 297 A SER 289 1_555 A N MSE 298 A MSE 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale10 A C MSE 298 A MSE 290 1_555 A N ASP 299 A ASP 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale11 A C GLY 321 A GLY 313 1_555 A N MSE 322 A MSE 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale12 A C MSE 322 A MSE 314 1_555 A N PHE 323 A PHE 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale13 A C PHE 345 A PHE 337 1_555 A N MSE 346 A MSE 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale14 A C MSE 346 A MSE 338 1_555 A N LYS 347 A LYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale15 A C LYS 347 A LYS 339 1_555 A N MSE 348 A MSE 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale16 A C MSE 348 A MSE 340 1_555 A N ASN 349 A ASN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale17 A C PHE 357 A PHE 349 1_555 A N MSE 358 A MSE 350 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.327 ? 
covale ? covale18 A C PHE 357 A PHE 349 1_555 A N MSE 358 A MSE 350 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? 
covale ? covale19 A C MSE 358 A MSE 350 1_555 A N ASP 359 A ASP 351 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale20 A C MSE 358 A MSE 350 1_555 A N ASP 359 A ASP 351 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'C10 H13 N5 O5' 
_chem_comp.formula_weight    283.241 
_chem_comp.id                GMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GUANOSINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' GMP sing 129 n n 
O5' HO5' GMP sing 130 n n 
C5' C4' GMP sing 131 n n 
C5' "H5'1" GMP sing 132 n n 
C5' "H5'2" GMP sing 133 n n 
C4' O4' GMP sing 134 n n 
C4' C3' GMP sing 135 n n 
C4' H4' GMP sing 136 n n 
O4' C1' GMP sing 137 n n 
C3' O3' GMP sing 138 n n 
C3' C2' GMP sing 139 n n 
C3' H3' GMP sing 140 n n 
O3' HO3' GMP sing 141 n n 
C2' O2' GMP sing 142 n n 
C2' C1' GMP sing 143 n n 
C2' H2' GMP sing 144 n n 
O2' HO2' GMP sing 145 n n 
C1' N9 GMP sing 146 n n 
C1' H1' GMP sing 147 n n 
N9 C8 GMP sing 148 n y 
N9 C4 GMP sing 149 n y 
C8 N7 GMP doub 150 n y 
C8 H8 GMP sing 151 n n 
N7 C5 GMP sing 152 n y 
C5 C6 GMP sing 153 n n 
C5 C4 GMP doub 154 n y 
C6 O6 GMP doub 155 n n 
C6 N1 GMP sing 156 n n 
N1 C2 GMP sing 157 n n 
N1 HN1 GMP sing 158 n n 
C2 N2 GMP sing 159 n n 
C2 N3 GMP doub 160 n n 
N2 HN21 GMP sing 161 n n 
N2 HN22 GMP sing 162 n n 
N3 C4 GMP sing 163 n n 
#
_atom_sites.entry_id                     2QVN 
_atom_sites.fract_transf_matrix[1][1]    0.006918 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006806 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01982 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GMP A 1 500 500 GMP GMP . 
C 3 NHE A 1 600 600 NHE NHE . 
D 4 HOH A 1 601 1 HOH HOH . 
D 4 HOH A 2 602 2 HOH HOH . 
D 4 HOH A 3 603 3 HOH HOH . 
D 4 HOH A 4 604 4 HOH HOH . 
D 4 HOH A 5 605 5 HOH HOH . 
D 4 HOH A 6 606 6 HOH HOH . 
D 4 HOH A 7 607 7 HOH HOH . 
D 4 HOH A 8 608 8 HOH HOH . 
D 4 HOH A 9 609 9 HOH HOH . 
D 4 HOH A 10 610 10 HOH HOH . 
D 4 HOH A 11 611 11 HOH HOH . 
D 4 HOH A 12 612 12 HOH HOH . 
D 4 HOH A 13 613 13 HOH HOH . 
D 4 HOH A 14 614 14 HOH HOH . 
D 4 HOH A 15 615 15 HOH HOH . 
D 4 HOH A 16 616 16 HOH HOH . 
D 4 HOH A 17 617 17 HOH HOH . 
D 4 HOH A 18 618 18 HOH HOH . 
D 4 HOH A 19 619 19 HOH HOH . 
D 4 HOH A 20 620 20 HOH HOH . 
D 4 HOH A 21 621 21 HOH HOH . 
D 4 HOH A 22 622 22 HOH HOH . 
D 4 HOH A 23 623 23 HOH HOH . 
D 4 HOH A 24 624 24 HOH HOH . 
D 4 HOH A 25 625 25 HOH HOH . 
D 4 HOH A 26 626 26 HOH HOH . 
D 4 HOH A 27 627 27 HOH HOH . 
D 4 HOH A 28 628 28 HOH HOH . 
D 4 HOH A 29 629 29 HOH HOH . 
D 4 HOH A 30 630 30 HOH HOH . 
D 4 HOH A 31 631 31 HOH HOH . 
D 4 HOH A 32 632 32 HOH HOH . 
D 4 HOH A 33 633 33 HOH HOH . 
D 4 HOH A 34 634 34 HOH HOH . 
D 4 HOH A 35 635 35 HOH HOH . 
D 4 HOH A 36 636 36 HOH HOH . 
D 4 HOH A 37 637 37 HOH HOH . 
D 4 HOH A 38 638 38 HOH HOH . 
D 4 HOH A 39 639 39 HOH HOH . 
D 4 HOH A 40 640 40 HOH HOH . 
D 4 HOH A 41 641 41 HOH HOH . 
D 4 HOH A 42 642 42 HOH HOH . 
D 4 HOH A 43 643 43 HOH HOH . 
D 4 HOH A 44 644 44 HOH HOH . 
D 4 HOH A 45 645 45 HOH HOH . 
D 4 HOH A 46 646 46 HOH HOH . 
D 4 HOH A 47 647 47 HOH HOH . 
D 4 HOH A 48 648 48 HOH HOH . 
D 4 HOH A 49 649 49 HOH HOH . 
D 4 HOH A 50 650 50 HOH HOH . 
D 4 HOH A 51 651 51 HOH HOH . 
D 4 HOH A 52 652 52 HOH HOH . 
D 4 HOH A 53 653 53 HOH HOH . 
D 4 HOH A 54 654 54 HOH HOH . 
D 4 HOH A 55 655 55 HOH HOH . 
D 4 HOH A 56 656 56 HOH HOH . 
D 4 HOH A 57 657 57 HOH HOH . 
D 4 HOH A 58 658 58 HOH HOH . 
D 4 HOH A 59 659 59 HOH HOH . 
D 4 HOH A 60 660 60 HOH HOH . 
D 4 HOH A 61 661 61 HOH HOH . 
D 4 HOH A 62 662 62 HOH HOH . 
D 4 HOH A 63 663 63 HOH HOH . 
D 4 HOH A 64 664 64 HOH HOH . 
D 4 HOH A 65 665 65 HOH HOH . 
D 4 HOH A 66 666 66 HOH HOH . 
D 4 HOH A 67 667 67 HOH HOH . 
D 4 HOH A 68 668 68 HOH HOH . 
D 4 HOH A 69 669 69 HOH HOH . 
D 4 HOH A 70 670 70 HOH HOH . 
D 4 HOH A 71 671 71 HOH HOH . 
D 4 HOH A 72 672 72 HOH HOH . 
D 4 HOH A 73 673 73 HOH HOH . 
D 4 HOH A 74 674 74 HOH HOH . 
D 4 HOH A 75 675 75 HOH HOH . 
D 4 HOH A 76 676 76 HOH HOH . 
D 4 HOH A 77 677 77 HOH HOH . 
D 4 HOH A 78 678 78 HOH HOH . 
D 4 HOH A 79 679 79 HOH HOH . 
D 4 HOH A 80 680 80 HOH HOH . 
D 4 HOH A 81 681 81 HOH HOH . 
D 4 HOH A 82 682 82 HOH HOH . 
D 4 HOH A 83 683 83 HOH HOH . 
D 4 HOH A 84 684 84 HOH HOH . 
D 4 HOH A 85 685 85 HOH HOH . 
D 4 HOH A 86 686 86 HOH HOH . 
D 4 HOH A 87 687 87 HOH HOH . 
D 4 HOH A 88 688 88 HOH HOH . 
D 4 HOH A 89 689 89 HOH HOH . 
D 4 HOH A 90 690 90 HOH HOH . 
D 4 HOH A 91 691 91 HOH HOH . 
D 4 HOH A 92 692 92 HOH HOH . 
D 4 HOH A 93 693 93 HOH HOH . 
D 4 HOH A 94 694 94 HOH HOH . 
D 4 HOH A 95 695 95 HOH HOH . 
D 4 HOH A 96 696 96 HOH HOH . 
D 4 HOH A 97 697 97 HOH HOH . 
D 4 HOH A 98 698 98 HOH HOH . 
D 4 HOH A 99 699 99 HOH HOH . 
D 4 HOH A 100 700 100 HOH HOH . 
D 4 HOH A 101 701 101 HOH HOH . 
D 4 HOH A 102 702 102 HOH HOH . 
D 4 HOH A 103 703 103 HOH HOH . 
D 4 HOH A 104 704 104 HOH HOH . 
D 4 HOH A 105 705 105 HOH HOH . 
D 4 HOH A 106 706 106 HOH HOH . 
D 4 HOH A 107 707 107 HOH HOH . 
D 4 HOH A 108 708 108 HOH HOH . 
D 4 HOH A 109 709 109 HOH HOH . 
D 4 HOH A 110 710 110 HOH HOH . 
D 4 HOH A 111 711 111 HOH HOH . 
D 4 HOH A 112 712 112 HOH HOH . 
D 4 HOH A 113 713 113 HOH HOH . 
D 4 HOH A 114 714 114 HOH HOH . 
D 4 HOH A 115 715 115 HOH HOH . 
D 4 HOH A 116 716 116 HOH HOH . 
D 4 HOH A 117 717 117 HOH HOH . 
D 4 HOH A 118 718 118 HOH HOH . 
D 4 HOH A 119 719 119 HOH HOH . 
D 4 HOH A 120 720 120 HOH HOH . 
D 4 HOH A 121 721 121 HOH HOH . 
D 4 HOH A 122 722 122 HOH HOH . 
D 4 HOH A 123 723 123 HOH HOH . 
D 4 HOH A 124 724 124 HOH HOH . 
D 4 HOH A 125 725 125 HOH HOH . 
D 4 HOH A 126 726 126 HOH HOH . 
D 4 HOH A 127 727 127 HOH HOH . 
D 4 HOH A 128 728 128 HOH HOH . 
D 4 HOH A 129 729 129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' GMP . . . B 2 32.428 21.119 35.343 1 33.88 ? O5' GMP 500 A 1 
HETATM 2 C C5' GMP . . . B 2 32.96 21.338 36.637 1 38.04 ? C5' GMP 500 A 1 
HETATM 3 C C4' GMP . . . B 2 32.848 22.817 36.961 1 41.42 ? C4' GMP 500 A 1 
HETATM 4 O O4' GMP . . . B 2 31.516 23.238 36.72 1 41.27 ? O4' GMP 500 A 1 
HETATM 5 C C3' GMP . . . B 2 33.149 23.139 38.416 1 42.52 ? C3' GMP 500 A 1 
HETATM 6 O O3' GMP . . . B 2 33.707 24.435 38.51 1 45.54 ? O3' GMP 500 A 1 
HETATM 7 C C2' GMP . . . B 2 31.785 23.111 39.055 1 45.86 ? C2' GMP 500 A 1 
HETATM 8 O O2' GMP . . . B 2 31.707 23.821 40.281 1 39.46 ? O2' GMP 500 A 1 
HETATM 9 C C1' GMP . . . B 2 30.978 23.739 37.925 1 43.44 ? C1' GMP 500 A 1 
HETATM 10 N N9 GMP . . . B 2 29.544 23.462 38.056 1 44.12 ? N9 GMP 500 A 1 
HETATM 11 C C8 GMP . . . B 2 28.887 22.26 37.973 1 43.35 ? C8 GMP 500 A 1 
HETATM 12 N N7 GMP . . . B 2 27.564 22.491 38.164 1 42.33 ? N7 GMP 500 A 1 
HETATM 13 C C5 GMP . . . B 2 27.38 23.819 38.362 1 46.23 ? C5 GMP 500 A 1 
HETATM 14 C C6 GMP . . . B 2 26.265 24.615 38.609 1 48.58 ? C6 GMP 500 A 1 
HETATM 15 O O6 GMP . . . B 2 25.141 24.123 38.685 1 46.28 ? O6 GMP 500 A 1 
HETATM 16 N N1 GMP . . . B 2 26.432 25.982 38.775 1 46.08 ? N1 GMP 500 A 1 
HETATM 17 C C2 GMP . . . B 2 27.679 26.567 38.699 1 44.93 ? C2 GMP 500 A 1 
HETATM 18 N N2 GMP . . . B 2 27.837 27.879 38.851 1 42.86 ? N2 GMP 500 A 1 
HETATM 19 N N3 GMP . . . B 2 28.767 25.768 38.456 1 42.47 ? N3 GMP 500 A 1 
HETATM 20 C C4 GMP . . . B 2 28.622 24.433 38.296 1 44.11 ? C4 GMP 500 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           20 
#