data_2QVR # _model_server_result.job_id eoFwaxhGzp_EupbUPOsYGw _model_server_result.datetime_utc '2024-12-19 09:02:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qvr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":333}' # _entry.id 2QVR # _exptl.entry_id 2QVR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.116 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2,6-di-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QVR _cell.length_a 44.002 _cell.length_b 82.251 _cell.length_c 174.194 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QVR _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N LYS 2 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C LEU 108 A LEU 108 1_555 A N MSE 109 A MSE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale3 A C MSE 109 A MSE 109 1_555 A N ASP 110 A ASP 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C THR 165 A THR 165 1_555 A N MSE 166 A MSE 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C MSE 166 A MSE 166 1_555 A N LEU 167 A LEU 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 A C ARG 193 A ARG 193 1_555 A N MSE 194 A MSE 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C MSE 194 A MSE 194 1_555 A N ARG 195 A ARG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C PRO 278 A PRO 278 1_555 A N MSE 279 A MSE 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C MSE 279 A MSE 279 1_555 A N ALA 280 A ALA 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 A C HIS 317 A HIS 317 1_555 A N MSE 318 A MSE 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C MSE 318 A MSE 318 1_555 A N VAL 319 A VAL 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OD1 ASP 110 A ASP 110 1_555 C MG MG . A MG 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc2 A OD1 ASP 113 A ASP 113 1_555 C MG MG . A MG 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc3 A OE1 GLU 275 A GLU 275 1_555 C MG MG . A MG 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc4 B O1 FDP . A FDP 333 1_555 C MG MG . A MG 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id FDP _chem_comp.mon_nstd_flag n _chem_comp.name 2,6-di-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms FRUCTOSE-2,6-DIPHOSPHATE;2,6-di-O-phosphono-beta-D-fructose;2,6-di-O-phosphono-D-fructose;2,6-di-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P FDP doub 103 n n P1 O2P FDP sing 104 n n P1 O3P FDP sing 105 n n P1 O2 FDP sing 106 n n O2P HOP2 FDP sing 107 n n O3P HOP3 FDP sing 108 n n O1 C1 FDP sing 109 n n O1 HO1 FDP sing 110 n n C1 C2 FDP sing 111 n n C1 H11 FDP sing 112 n n C1 H12 FDP sing 113 n n C2 O2 FDP sing 114 n n C2 C3 FDP sing 115 n n C2 O5 FDP sing 116 n n C3 O3 FDP sing 117 n n C3 C4 FDP sing 118 n n C3 H3 FDP sing 119 n n O3 HO3 FDP sing 120 n n C4 O4 FDP sing 121 n n C4 C5 FDP sing 122 n n C4 H4 FDP sing 123 n n O4 HO4 FDP sing 124 n n C5 O5 FDP sing 125 n n C5 C6 FDP sing 126 n n C5 H5 FDP sing 127 n n C6 O6 FDP sing 128 n n C6 H61 FDP sing 129 n n C6 H62 FDP sing 130 n n O6 P2 FDP sing 131 n n P2 O4P FDP doub 132 n n P2 O5P FDP sing 133 n n P2 O6P FDP sing 134 n n O5P HOP5 FDP sing 135 n n O6P HOP6 FDP sing 136 n n # _pdbx_chem_comp_identifier.comp_id FDP _pdbx_chem_comp_identifier.identifier b-D-Fruf2PO36PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2QVR _atom_sites.fract_transf_matrix[1][1] 0.022726 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FDP A 1 333 333 FDP FDP . C 3 MG A 1 334 334 MG MG . D 4 CIT A 1 335 335 CIT CIT . E 5 HOH A 1 336 336 HOH HOH . E 5 HOH A 2 337 337 HOH HOH . E 5 HOH A 3 338 338 HOH HOH . E 5 HOH A 4 339 339 HOH HOH . E 5 HOH A 5 340 340 HOH HOH . E 5 HOH A 6 341 341 HOH HOH . E 5 HOH A 7 342 342 HOH HOH . E 5 HOH A 8 343 343 HOH HOH . E 5 HOH A 9 344 344 HOH HOH . E 5 HOH A 10 345 345 HOH HOH . E 5 HOH A 11 346 346 HOH HOH . E 5 HOH A 12 347 347 HOH HOH . E 5 HOH A 13 348 348 HOH HOH . E 5 HOH A 14 349 349 HOH HOH . E 5 HOH A 15 350 350 HOH HOH . E 5 HOH A 16 351 351 HOH HOH . E 5 HOH A 17 352 352 HOH HOH . E 5 HOH A 18 353 353 HOH HOH . E 5 HOH A 19 354 354 HOH HOH . E 5 HOH A 20 355 355 HOH HOH . E 5 HOH A 21 356 356 HOH HOH . E 5 HOH A 22 357 357 HOH HOH . E 5 HOH A 23 358 358 HOH HOH . E 5 HOH A 24 359 359 HOH HOH . E 5 HOH A 25 360 360 HOH HOH . E 5 HOH A 26 361 361 HOH HOH . E 5 HOH A 27 362 362 HOH HOH . E 5 HOH A 28 363 363 HOH HOH . E 5 HOH A 29 364 364 HOH HOH . E 5 HOH A 30 365 365 HOH HOH . E 5 HOH A 31 366 366 HOH HOH . E 5 HOH A 32 367 367 HOH HOH . E 5 HOH A 33 368 368 HOH HOH . E 5 HOH A 34 369 369 HOH HOH . E 5 HOH A 35 370 370 HOH HOH . E 5 HOH A 36 371 371 HOH HOH . E 5 HOH A 37 372 372 HOH HOH . E 5 HOH A 38 373 373 HOH HOH . E 5 HOH A 39 374 374 HOH HOH . E 5 HOH A 40 375 375 HOH HOH . E 5 HOH A 41 376 376 HOH HOH . E 5 HOH A 42 377 377 HOH HOH . E 5 HOH A 43 378 378 HOH HOH . E 5 HOH A 44 379 379 HOH HOH . E 5 HOH A 45 380 380 HOH HOH . E 5 HOH A 46 381 381 HOH HOH . E 5 HOH A 47 382 382 HOH HOH . E 5 HOH A 48 383 383 HOH HOH . E 5 HOH A 49 384 384 HOH HOH . E 5 HOH A 50 385 385 HOH HOH . E 5 HOH A 51 386 386 HOH HOH . E 5 HOH A 52 387 387 HOH HOH . E 5 HOH A 53 388 388 HOH HOH . E 5 HOH A 54 389 389 HOH HOH . E 5 HOH A 55 390 390 HOH HOH . E 5 HOH A 56 391 391 HOH HOH . E 5 HOH A 57 392 392 HOH HOH . E 5 HOH A 58 393 393 HOH HOH . E 5 HOH A 59 394 394 HOH HOH . E 5 HOH A 60 395 395 HOH HOH . E 5 HOH A 61 396 396 HOH HOH . E 5 HOH A 62 397 397 HOH HOH . E 5 HOH A 63 398 398 HOH HOH . E 5 HOH A 64 399 399 HOH HOH . E 5 HOH A 65 400 400 HOH HOH . E 5 HOH A 66 401 401 HOH HOH . E 5 HOH A 67 402 402 HOH HOH . E 5 HOH A 68 403 403 HOH HOH . E 5 HOH A 69 404 404 HOH HOH . E 5 HOH A 70 405 405 HOH HOH . E 5 HOH A 71 406 406 HOH HOH . E 5 HOH A 72 407 407 HOH HOH . E 5 HOH A 73 408 408 HOH HOH . E 5 HOH A 74 409 409 HOH HOH . E 5 HOH A 75 410 410 HOH HOH . E 5 HOH A 76 411 411 HOH HOH . E 5 HOH A 77 412 412 HOH HOH . E 5 HOH A 78 413 413 HOH HOH . E 5 HOH A 79 414 414 HOH HOH . E 5 HOH A 80 415 415 HOH HOH . E 5 HOH A 81 416 416 HOH HOH . E 5 HOH A 82 417 417 HOH HOH . E 5 HOH A 83 418 418 HOH HOH . E 5 HOH A 84 419 419 HOH HOH . E 5 HOH A 85 420 420 HOH HOH . E 5 HOH A 86 421 421 HOH HOH . E 5 HOH A 87 422 422 HOH HOH . E 5 HOH A 88 423 423 HOH HOH . E 5 HOH A 89 424 424 HOH HOH . E 5 HOH A 90 425 425 HOH HOH . E 5 HOH A 91 426 426 HOH HOH . E 5 HOH A 92 427 427 HOH HOH . E 5 HOH A 93 428 428 HOH HOH . E 5 HOH A 94 429 429 HOH HOH . E 5 HOH A 95 430 430 HOH HOH . E 5 HOH A 96 431 431 HOH HOH . E 5 HOH A 97 432 432 HOH HOH . E 5 HOH A 98 433 433 HOH HOH . E 5 HOH A 99 434 434 HOH HOH . E 5 HOH A 100 435 435 HOH HOH . E 5 HOH A 101 436 436 HOH HOH . E 5 HOH A 102 437 437 HOH HOH . E 5 HOH A 103 438 438 HOH HOH . E 5 HOH A 104 439 439 HOH HOH . E 5 HOH A 105 440 440 HOH HOH . E 5 HOH A 106 441 441 HOH HOH . E 5 HOH A 107 442 442 HOH HOH . E 5 HOH A 108 443 443 HOH HOH . E 5 HOH A 109 444 444 HOH HOH . E 5 HOH A 110 445 445 HOH HOH . E 5 HOH A 111 446 446 HOH HOH . E 5 HOH A 112 447 447 HOH HOH . E 5 HOH A 113 448 448 HOH HOH . E 5 HOH A 114 449 449 HOH HOH . E 5 HOH A 115 450 450 HOH HOH . E 5 HOH A 116 451 451 HOH HOH . E 5 HOH A 117 452 452 HOH HOH . E 5 HOH A 118 453 453 HOH HOH . E 5 HOH A 119 454 454 HOH HOH . E 5 HOH A 120 455 455 HOH HOH . E 5 HOH A 121 456 456 HOH HOH . E 5 HOH A 122 457 457 HOH HOH . E 5 HOH A 123 458 458 HOH HOH . E 5 HOH A 124 459 459 HOH HOH . E 5 HOH A 125 460 460 HOH HOH . E 5 HOH A 126 461 461 HOH HOH . E 5 HOH A 127 462 462 HOH HOH . E 5 HOH A 128 463 463 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 FDP . . . B 2 10.386 7.342 26.151 1 38.67 ? P1 FDP 333 A 1 HETATM 2 O O1P FDP . . . B 2 11.243 7.886 27.286 1 39.61 ? O1P FDP 333 A 1 HETATM 3 O O2P FDP . . . B 2 10.628 8.077 24.834 1 39.48 ? O2P FDP 333 A 1 HETATM 4 O O3P FDP . . . B 2 10.519 5.828 26.008 1 37.69 ? O3P FDP 333 A 1 HETATM 5 O O1 FDP . . . B 2 9.196 10.471 25.76 1 33.59 ? O1 FDP 333 A 1 HETATM 6 C C1 FDP . . . B 2 9.417 9.932 27.052 1 27.97 ? C1 FDP 333 A 1 HETATM 7 C C2 FDP . . . B 2 8.502 8.748 27.336 1 29.33 ? C2 FDP 333 A 1 HETATM 8 O O2 FDP . . . B 2 8.812 7.59 26.522 1 29.87 ? O2 FDP 333 A 1 HETATM 9 C C3 FDP . . . B 2 7.016 9.043 27.148 1 27.09 ? C3 FDP 333 A 1 HETATM 10 O O3 FDP . . . B 2 6.664 8.89 25.785 1 23.27 ? O3 FDP 333 A 1 HETATM 11 C C4 FDP . . . B 2 6.385 7.99 28.048 1 27.53 ? C4 FDP 333 A 1 HETATM 12 O O4 FDP . . . B 2 5.085 8.384 28.469 1 26.77 ? O4 FDP 333 A 1 HETATM 13 C C5 FDP . . . B 2 7.358 7.942 29.222 1 26.29 ? C5 FDP 333 A 1 HETATM 14 O O5 FDP . . . B 2 8.635 8.413 28.705 1 28.83 ? O5 FDP 333 A 1 HETATM 15 C C6 FDP . . . B 2 7.56 6.559 29.775 1 27.07 ? C6 FDP 333 A 1 HETATM 16 O O6 FDP . . . B 2 8.666 6.609 30.696 1 28.46 ? O6 FDP 333 A 1 HETATM 17 P P2 FDP . . . B 2 8.917 5.371 31.723 1 28.26 ? P2 FDP 333 A 1 HETATM 18 O O4P FDP . . . B 2 9.707 4.328 30.944 1 28.54 ? O4P FDP 333 A 1 HETATM 19 O O5P FDP . . . B 2 9.71 5.943 32.884 1 31.63 ? O5P FDP 333 A 1 HETATM 20 O O6P FDP . . . B 2 7.532 4.891 32.121 1 25.3 ? O6P FDP 333 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 1027 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 20 #