data_2QWQ # _model_server_result.job_id vjQ6ZQMpkqdp75farOMaDg _model_server_result.datetime_utc '2025-04-18 01:27:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qwq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":487}' # _entry.id 2QWQ # _exptl.entry_id 2QWQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QWQ _cell.length_a 38.797 _cell.length_b 56.494 _cell.length_c 225.878 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QWQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 171 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 171 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 64 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 876 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.054 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 8 n n PB O2B ADP sing 9 n n PB O3B ADP sing 10 n n PB O3A ADP sing 11 n n O2B HOB2 ADP sing 12 n n O3B HOB3 ADP sing 13 n n PA O1A ADP doub 14 n n PA O2A ADP sing 15 n n PA O3A ADP sing 16 n n PA O5' ADP sing 17 n n O2A HOA2 ADP sing 18 n n O5' C5' ADP sing 19 n n C5' C4' ADP sing 20 n n C5' "H5'1" ADP sing 21 n n C5' "H5'2" ADP sing 22 n n C4' O4' ADP sing 23 n n C4' C3' ADP sing 24 n n C4' H4' ADP sing 25 n n O4' C1' ADP sing 26 n n C3' O3' ADP sing 27 n n C3' C2' ADP sing 28 n n C3' H3' ADP sing 29 n n O3' HO3' ADP sing 30 n n C2' O2' ADP sing 31 n n C2' C1' ADP sing 32 n n C2' H2' ADP sing 33 n n O2' HO2' ADP sing 34 n n C1' N9 ADP sing 35 n n C1' H1' ADP sing 36 n n N9 C8 ADP sing 37 n y N9 C4 ADP sing 38 n y C8 N7 ADP doub 39 n y C8 H8 ADP sing 40 n n N7 C5 ADP sing 41 n y C5 C6 ADP sing 42 n y C5 C4 ADP doub 43 n y C6 N6 ADP sing 44 n n C6 N1 ADP doub 45 n y N6 HN61 ADP sing 46 n n N6 HN62 ADP sing 47 n n N1 C2 ADP sing 48 n y C2 N3 ADP doub 49 n y C2 H2 ADP sing 50 n n N3 C4 ADP sing 51 n y # _atom_sites.entry_id 2QWQ _atom_sites.fract_transf_matrix[1][1] 0.025775 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017701 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004427 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 488 488 PO4 PO4 . D 4 ADP A 1 487 487 ADP ADP . E 5 ACY A 1 1022 1022 ACY ACY . F 6 GOL A 1 3147 3147 GOL GOL . G 6 GOL A 1 3148 3148 GOL GOL . H 7 HOH A 1 3149 1 HOH HOH . H 7 HOH A 2 3150 2 HOH HOH . H 7 HOH A 3 3151 3 HOH HOH . H 7 HOH A 4 3152 4 HOH HOH . H 7 HOH A 5 3153 5 HOH HOH . H 7 HOH A 6 3154 6 HOH HOH . H 7 HOH A 7 3155 7 HOH HOH . H 7 HOH A 8 3156 9 HOH HOH . H 7 HOH A 9 3157 10 HOH HOH . H 7 HOH A 10 3158 11 HOH HOH . H 7 HOH A 11 3159 12 HOH HOH . H 7 HOH A 12 3160 13 HOH HOH . H 7 HOH A 13 3161 14 HOH HOH . H 7 HOH A 14 3162 15 HOH HOH . H 7 HOH A 15 3163 16 HOH HOH . H 7 HOH A 16 3164 17 HOH HOH . H 7 HOH A 17 3165 18 HOH HOH . H 7 HOH A 18 3166 19 HOH HOH . H 7 HOH A 19 3167 20 HOH HOH . H 7 HOH A 20 3168 21 HOH HOH . H 7 HOH A 21 3169 22 HOH HOH . H 7 HOH A 22 3170 23 HOH HOH . H 7 HOH A 23 3171 25 HOH HOH . H 7 HOH A 24 3172 26 HOH HOH . H 7 HOH A 25 3173 27 HOH HOH . H 7 HOH A 26 3174 28 HOH HOH . H 7 HOH A 27 3175 29 HOH HOH . H 7 HOH A 28 3176 30 HOH HOH . H 7 HOH A 29 3177 31 HOH HOH . H 7 HOH A 30 3178 32 HOH HOH . H 7 HOH A 31 3179 33 HOH HOH . H 7 HOH A 32 3180 34 HOH HOH . H 7 HOH A 33 3181 36 HOH HOH . H 7 HOH A 34 3182 37 HOH HOH . H 7 HOH A 35 3183 38 HOH HOH . H 7 HOH A 36 3184 39 HOH HOH . H 7 HOH A 37 3185 40 HOH HOH . H 7 HOH A 38 3186 41 HOH HOH . H 7 HOH A 39 3187 42 HOH HOH . H 7 HOH A 40 3188 43 HOH HOH . H 7 HOH A 41 3189 45 HOH HOH . H 7 HOH A 42 3190 46 HOH HOH . H 7 HOH A 43 3191 48 HOH HOH . H 7 HOH A 44 3192 49 HOH HOH . H 7 HOH A 45 3193 51 HOH HOH . H 7 HOH A 46 3194 52 HOH HOH . H 7 HOH A 47 3195 53 HOH HOH . H 7 HOH A 48 3196 54 HOH HOH . H 7 HOH A 49 3197 55 HOH HOH . H 7 HOH A 50 3198 56 HOH HOH . H 7 HOH A 51 3199 58 HOH HOH . H 7 HOH A 52 3200 59 HOH HOH . H 7 HOH A 53 3201 60 HOH HOH . H 7 HOH A 54 3202 61 HOH HOH . H 7 HOH A 55 3203 62 HOH HOH . H 7 HOH A 56 3204 67 HOH HOH . H 7 HOH A 57 3205 68 HOH HOH . H 7 HOH A 58 3206 69 HOH HOH . H 7 HOH A 59 3207 70 HOH HOH . H 7 HOH A 60 3208 71 HOH HOH . H 7 HOH A 61 3209 72 HOH HOH . H 7 HOH A 62 3210 74 HOH HOH . H 7 HOH A 63 3211 75 HOH HOH . H 7 HOH A 64 3212 76 HOH HOH . H 7 HOH A 65 3213 77 HOH HOH . H 7 HOH A 66 3214 78 HOH HOH . H 7 HOH A 67 3215 79 HOH HOH . H 7 HOH A 68 3216 80 HOH HOH . H 7 HOH A 69 3217 81 HOH HOH . H 7 HOH A 70 3218 85 HOH HOH . H 7 HOH A 71 3219 86 HOH HOH . H 7 HOH A 72 3220 87 HOH HOH . H 7 HOH A 73 3221 88 HOH HOH . H 7 HOH A 74 3222 89 HOH HOH . H 7 HOH A 75 3223 90 HOH HOH . H 7 HOH A 76 3224 91 HOH HOH . H 7 HOH A 77 3225 95 HOH HOH . H 7 HOH A 78 3226 97 HOH HOH . H 7 HOH A 79 3227 98 HOH HOH . H 7 HOH A 80 3228 99 HOH HOH . H 7 HOH A 81 3229 101 HOH HOH . H 7 HOH A 82 3230 102 HOH HOH . H 7 HOH A 83 3231 106 HOH HOH . H 7 HOH A 84 3232 107 HOH HOH . H 7 HOH A 85 3233 108 HOH HOH . H 7 HOH A 86 3234 109 HOH HOH . H 7 HOH A 87 3235 113 HOH HOH . H 7 HOH A 88 3236 115 HOH HOH . H 7 HOH A 89 3237 116 HOH HOH . H 7 HOH A 90 3238 118 HOH HOH . H 7 HOH A 91 3239 119 HOH HOH . H 7 HOH A 92 3240 122 HOH HOH . H 7 HOH A 93 3241 124 HOH HOH . H 7 HOH A 94 3242 128 HOH HOH . H 7 HOH A 95 3243 129 HOH HOH . H 7 HOH A 96 3244 131 HOH HOH . H 7 HOH A 97 3245 132 HOH HOH . H 7 HOH A 98 3246 133 HOH HOH . I 7 HOH B 1 905 35 HOH HOH . I 7 HOH B 2 906 44 HOH HOH . I 7 HOH B 3 907 50 HOH HOH . I 7 HOH B 4 908 57 HOH HOH . I 7 HOH B 5 909 93 HOH HOH . I 7 HOH B 6 910 105 HOH HOH . I 7 HOH B 7 911 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . D 4 5.232 1.339 -23.332 1 28.67 ? PB ADP 487 A 1 HETATM 2 O O1B ADP . . . D 4 5.509 2.78 -23.681 1 27.64 ? O1B ADP 487 A 1 HETATM 3 O O2B ADP . . . D 4 4.403 1.184 -22.091 1 33.03 ? O2B ADP 487 A 1 HETATM 4 O O3B ADP . . . D 4 4.788 0.44 -24.455 1 31.61 ? O3B ADP 487 A 1 HETATM 5 P PA ADP . . . D 4 7.513 -0.346 -22.419 1 26.2 ? PA ADP 487 A 1 HETATM 6 O O1A ADP . . . D 4 6.599 -1.553 -22.446 1 27.31 ? O1A ADP 487 A 1 HETATM 7 O O2A ADP . . . D 4 8.787 -0.238 -23.191 1 25.16 ? O2A ADP 487 A 1 HETATM 8 O O3A ADP . . . D 4 6.701 0.993 -22.763 1 28.54 ? O3A ADP 487 A 1 HETATM 9 O O5' ADP . . . D 4 7.975 -0.141 -20.908 1 25.18 ? O5' ADP 487 A 1 HETATM 10 C C5' ADP . . . D 4 8.541 1.11 -20.484 1 23.62 ? C5' ADP 487 A 1 HETATM 11 C C4' ADP . . . D 4 8.719 0.92 -18.996 1 23.05 ? C4' ADP 487 A 1 HETATM 12 O O4' ADP . . . D 4 9.413 -0.33 -18.722 1 23.71 ? O4' ADP 487 A 1 HETATM 13 C C3' ADP . . . D 4 9.53 2.015 -18.352 1 20.93 ? C3' ADP 487 A 1 HETATM 14 O O3' ADP . . . D 4 8.933 2.271 -17.089 1 23.38 ? O3' ADP 487 A 1 HETATM 15 C C2' ADP . . . D 4 10.842 1.376 -18.045 1 19.85 ? C2' ADP 487 A 1 HETATM 16 O O2' ADP . . . D 4 11.441 1.932 -16.898 1 19.56 ? O2' ADP 487 A 1 HETATM 17 C C1' ADP . . . D 4 10.408 -0.043 -17.728 1 21.25 ? C1' ADP 487 A 1 HETATM 18 N N9 ADP . . . D 4 11.612 -0.887 -17.78 1 18.66 ? N9 ADP 487 A 1 HETATM 19 C C8 ADP . . . D 4 12.386 -1.118 -18.847 1 18.84 ? C8 ADP 487 A 1 HETATM 20 N N7 ADP . . . D 4 13.417 -1.939 -18.501 1 21.15 ? N7 ADP 487 A 1 HETATM 21 C C5 ADP . . . D 4 13.289 -2.21 -17.178 1 19.45 ? C5 ADP 487 A 1 HETATM 22 C C6 ADP . . . D 4 13.994 -3.015 -16.166 1 20.68 ? C6 ADP 487 A 1 HETATM 23 N N6 ADP . . . D 4 15.105 -3.719 -16.476 1 20.83 ? N6 ADP 487 A 1 HETATM 24 N N1 ADP . . . D 4 13.513 -3.021 -14.907 1 20.39 ? N1 ADP 487 A 1 HETATM 25 C C2 ADP . . . D 4 12.405 -2.345 -14.545 1 19.33 ? C2 ADP 487 A 1 HETATM 26 N N3 ADP . . . D 4 11.71 -1.624 -15.417 1 18.14 ? N3 ADP 487 A 1 HETATM 27 C C4 ADP . . . D 4 12.109 -1.499 -16.709 1 17.67 ? C4 ADP 487 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #