data_2QWR # _model_server_result.job_id Q3ZagJt3CgLirqINQXrgPw _model_server_result.datetime_utc '2025-08-30 16:49:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qwr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":487}' # _entry.id 2QWR # _exptl.entry_id 2QWR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QWR _cell.length_a 38.797 _cell.length_b 56.494 _cell.length_c 225.878 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QWR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 171 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 171 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 64 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 876 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.063 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 20 n n PG O2G ANP sing 21 n n PG O3G ANP sing 22 n n PG N3B ANP sing 23 n n O2G HOG2 ANP sing 24 n n O3G HOG3 ANP sing 25 n n PB O1B ANP doub 26 n n PB O2B ANP sing 27 n n PB N3B ANP sing 28 n n PB O3A ANP sing 29 n n O2B HOB2 ANP sing 30 n n N3B HNB1 ANP sing 31 n n PA O1A ANP doub 32 n n PA O2A ANP sing 33 n n PA O3A ANP sing 34 n n PA O5' ANP sing 35 n n O2A HOA2 ANP sing 36 n n O5' C5' ANP sing 37 n n C5' C4' ANP sing 38 n n C5' "H5'1" ANP sing 39 n n C5' "H5'2" ANP sing 40 n n C4' O4' ANP sing 41 n n C4' C3' ANP sing 42 n n C4' H4' ANP sing 43 n n O4' C1' ANP sing 44 n n C3' O3' ANP sing 45 n n C3' C2' ANP sing 46 n n C3' H3' ANP sing 47 n n O3' HO3' ANP sing 48 n n C2' O2' ANP sing 49 n n C2' C1' ANP sing 50 n n C2' H2' ANP sing 51 n n O2' HO2' ANP sing 52 n n C1' N9 ANP sing 53 n n C1' H1' ANP sing 54 n n N9 C8 ANP sing 55 n y N9 C4 ANP sing 56 n y C8 N7 ANP doub 57 n y C8 H8 ANP sing 58 n n N7 C5 ANP sing 59 n y C5 C6 ANP sing 60 n y C5 C4 ANP doub 61 n y C6 N6 ANP sing 62 n n C6 N1 ANP doub 63 n y N6 HN61 ANP sing 64 n n N6 HN62 ANP sing 65 n n N1 C2 ANP sing 66 n y C2 N3 ANP doub 67 n y C2 H2 ANP sing 68 n n N3 C4 ANP sing 69 n y # _atom_sites.entry_id 2QWR _atom_sites.fract_transf_matrix[1][1] 0.025775 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017701 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004427 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 487 487 ANP ANP . D 4 ACY A 1 1022 1022 ACY ACY . E 5 GOL A 1 3147 3147 GOL GOL . F 5 GOL A 1 3148 3148 GOL GOL . G 6 HOH A 1 3149 1 HOH HOH . G 6 HOH A 2 3150 2 HOH HOH . G 6 HOH A 3 3151 3 HOH HOH . G 6 HOH A 4 3152 4 HOH HOH . G 6 HOH A 5 3153 5 HOH HOH . G 6 HOH A 6 3154 6 HOH HOH . G 6 HOH A 7 3155 7 HOH HOH . G 6 HOH A 8 3156 9 HOH HOH . G 6 HOH A 9 3157 10 HOH HOH . G 6 HOH A 10 3158 11 HOH HOH . G 6 HOH A 11 3159 12 HOH HOH . G 6 HOH A 12 3160 13 HOH HOH . G 6 HOH A 13 3161 14 HOH HOH . G 6 HOH A 14 3162 15 HOH HOH . G 6 HOH A 15 3163 16 HOH HOH . G 6 HOH A 16 3164 17 HOH HOH . G 6 HOH A 17 3165 18 HOH HOH . G 6 HOH A 18 3166 19 HOH HOH . G 6 HOH A 19 3167 20 HOH HOH . G 6 HOH A 20 3168 21 HOH HOH . G 6 HOH A 21 3169 22 HOH HOH . G 6 HOH A 22 3170 23 HOH HOH . G 6 HOH A 23 3171 25 HOH HOH . G 6 HOH A 24 3172 26 HOH HOH . G 6 HOH A 25 3173 27 HOH HOH . G 6 HOH A 26 3174 28 HOH HOH . G 6 HOH A 27 3175 29 HOH HOH . G 6 HOH A 28 3176 30 HOH HOH . G 6 HOH A 29 3177 31 HOH HOH . G 6 HOH A 30 3178 32 HOH HOH . G 6 HOH A 31 3179 33 HOH HOH . G 6 HOH A 32 3180 34 HOH HOH . G 6 HOH A 33 3181 36 HOH HOH . G 6 HOH A 34 3182 37 HOH HOH . G 6 HOH A 35 3183 38 HOH HOH . G 6 HOH A 36 3184 39 HOH HOH . G 6 HOH A 37 3185 40 HOH HOH . G 6 HOH A 38 3186 41 HOH HOH . G 6 HOH A 39 3187 42 HOH HOH . G 6 HOH A 40 3188 43 HOH HOH . G 6 HOH A 41 3189 45 HOH HOH . G 6 HOH A 42 3190 46 HOH HOH . G 6 HOH A 43 3191 48 HOH HOH . G 6 HOH A 44 3192 49 HOH HOH . G 6 HOH A 45 3193 51 HOH HOH . G 6 HOH A 46 3194 52 HOH HOH . G 6 HOH A 47 3195 53 HOH HOH . G 6 HOH A 48 3196 54 HOH HOH . G 6 HOH A 49 3197 55 HOH HOH . G 6 HOH A 50 3198 56 HOH HOH . G 6 HOH A 51 3199 58 HOH HOH . G 6 HOH A 52 3200 59 HOH HOH . G 6 HOH A 53 3201 60 HOH HOH . G 6 HOH A 54 3202 61 HOH HOH . G 6 HOH A 55 3203 62 HOH HOH . G 6 HOH A 56 3204 67 HOH HOH . G 6 HOH A 57 3205 68 HOH HOH . G 6 HOH A 58 3206 69 HOH HOH . G 6 HOH A 59 3207 70 HOH HOH . G 6 HOH A 60 3208 71 HOH HOH . G 6 HOH A 61 3209 72 HOH HOH . G 6 HOH A 62 3210 74 HOH HOH . G 6 HOH A 63 3211 75 HOH HOH . G 6 HOH A 64 3212 76 HOH HOH . G 6 HOH A 65 3213 77 HOH HOH . G 6 HOH A 66 3214 78 HOH HOH . G 6 HOH A 67 3215 79 HOH HOH . G 6 HOH A 68 3216 80 HOH HOH . G 6 HOH A 69 3217 81 HOH HOH . G 6 HOH A 70 3218 85 HOH HOH . G 6 HOH A 71 3219 86 HOH HOH . G 6 HOH A 72 3220 87 HOH HOH . G 6 HOH A 73 3221 88 HOH HOH . G 6 HOH A 74 3222 89 HOH HOH . G 6 HOH A 75 3223 90 HOH HOH . G 6 HOH A 76 3224 91 HOH HOH . G 6 HOH A 77 3225 95 HOH HOH . G 6 HOH A 78 3226 97 HOH HOH . G 6 HOH A 79 3227 98 HOH HOH . G 6 HOH A 80 3228 99 HOH HOH . G 6 HOH A 81 3229 101 HOH HOH . G 6 HOH A 82 3230 102 HOH HOH . G 6 HOH A 83 3231 106 HOH HOH . G 6 HOH A 84 3232 107 HOH HOH . G 6 HOH A 85 3233 108 HOH HOH . G 6 HOH A 86 3234 109 HOH HOH . G 6 HOH A 87 3235 113 HOH HOH . G 6 HOH A 88 3236 115 HOH HOH . G 6 HOH A 89 3237 116 HOH HOH . G 6 HOH A 90 3238 118 HOH HOH . G 6 HOH A 91 3239 119 HOH HOH . G 6 HOH A 92 3240 122 HOH HOH . G 6 HOH A 93 3241 124 HOH HOH . G 6 HOH A 94 3242 128 HOH HOH . G 6 HOH A 95 3243 129 HOH HOH . G 6 HOH A 96 3244 131 HOH HOH . G 6 HOH A 97 3245 132 HOH HOH . G 6 HOH A 98 3246 133 HOH HOH . H 6 HOH B 1 905 35 HOH HOH . H 6 HOH B 2 906 44 HOH HOH . H 6 HOH B 3 907 50 HOH HOH . H 6 HOH B 4 908 57 HOH HOH . H 6 HOH B 5 909 93 HOH HOH . H 6 HOH B 6 910 105 HOH HOH . H 6 HOH B 7 911 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 2.596 -0.032 -24.427 1 48.83 ? PG ANP 487 A 1 HETATM 2 O O1G ANP . . . C 3 3.096 -0.008 -25.899 1 40.6 ? O1G ANP 487 A 1 HETATM 3 O O2G ANP . . . C 3 2.725 -1.528 -24.124 1 43.37 ? O2G ANP 487 A 1 HETATM 4 O O3G ANP . . . C 3 1.273 0.84 -24.091 1 32.52 ? O3G ANP 487 A 1 HETATM 5 P PB ANP . . . C 3 5.221 1.284 -23.57 1 36.17 ? PB ANP 487 A 1 HETATM 6 O O1B ANP . . . C 3 5.577 0.652 -24.893 1 45.11 ? O1B ANP 487 A 1 HETATM 7 O O2B ANP . . . C 3 5.358 2.791 -23.462 1 35.07 ? O2B ANP 487 A 1 HETATM 8 N N3B ANP . . . C 3 3.717 0.621 -23.288 1 42.22 ? N3B ANP 487 A 1 HETATM 9 P PA ANP . . . C 3 7.449 -0.275 -22.443 1 30.42 ? PA ANP 487 A 1 HETATM 10 O O1A ANP . . . C 3 6.717 -1.603 -22.479 1 32.58 ? O1A ANP 487 A 1 HETATM 11 O O2A ANP . . . C 3 8.69 -0.004 -23.225 1 31.12 ? O2A ANP 487 A 1 HETATM 12 O O3A ANP . . . C 3 6.316 0.875 -22.47 1 34.67 ? O3A ANP 487 A 1 HETATM 13 O O5' ANP . . . C 3 7.977 -0.14 -20.942 1 29.88 ? O5' ANP 487 A 1 HETATM 14 C C5' ANP . . . C 3 8.483 1.131 -20.465 1 28.27 ? C5' ANP 487 A 1 HETATM 15 C C4' ANP . . . C 3 8.719 0.917 -18.98 1 28.8 ? C4' ANP 487 A 1 HETATM 16 O O4' ANP . . . C 3 9.417 -0.34 -18.704 1 30.11 ? O4' ANP 487 A 1 HETATM 17 C C3' ANP . . . C 3 9.535 2.008 -18.333 1 27.94 ? C3' ANP 487 A 1 HETATM 18 O O3' ANP . . . C 3 8.931 2.332 -17.079 1 31.38 ? O3' ANP 487 A 1 HETATM 19 C C2' ANP . . . C 3 10.857 1.376 -18.03 1 26.26 ? C2' ANP 487 A 1 HETATM 20 O O2' ANP . . . C 3 11.488 1.954 -16.909 1 26.19 ? O2' ANP 487 A 1 HETATM 21 C C1' ANP . . . C 3 10.426 -0.038 -17.706 1 28.21 ? C1' ANP 487 A 1 HETATM 22 N N9 ANP . . . C 3 11.628 -0.883 -17.756 1 25.58 ? N9 ANP 487 A 1 HETATM 23 C C8 ANP . . . C 3 12.385 -1.119 -18.828 1 25.21 ? C8 ANP 487 A 1 HETATM 24 N N7 ANP . . . C 3 13.388 -1.956 -18.442 1 28.13 ? N7 ANP 487 A 1 HETATM 25 C C5 ANP . . . C 3 13.244 -2.208 -17.11 1 26.78 ? C5 ANP 487 A 1 HETATM 26 C C6 ANP . . . C 3 13.921 -2.986 -16.17 1 28.07 ? C6 ANP 487 A 1 HETATM 27 N N6 ANP . . . C 3 15.024 -3.709 -16.486 1 27.29 ? N6 ANP 487 A 1 HETATM 28 N N1 ANP . . . C 3 13.48 -3.023 -14.899 1 27.23 ? N1 ANP 487 A 1 HETATM 29 C C2 ANP . . . C 3 12.39 -2.337 -14.518 1 26.31 ? C2 ANP 487 A 1 HETATM 30 N N3 ANP . . . C 3 11.722 -1.611 -15.402 1 25.07 ? N3 ANP 487 A 1 HETATM 31 C C4 ANP . . . C 3 12.136 -1.512 -16.69 1 24.84 ? C4 ANP 487 A 1 # _model_server_stats.io_time_ms 201 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 82 _model_server_stats.query_time_ms 411 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #