data_2QXJ # _model_server_result.job_id pr-NyJ6ik1f3JOwJXX1gvw _model_server_result.datetime_utc '2024-11-26 04:29:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qxj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":300}' # _entry.id 2QXJ # _exptl.entry_id 2QXJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.021 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3-carboxypropanoyl)-L-alanyl-L-alanyl-N-[(2S,3S)-4-chloro-3-hydroxy-1-phenylbutan-2-yl]-L-prolinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.94 _cell.angle_gamma 90 _cell.entry_id 2QXJ _cell.length_a 45.609 _cell.length_b 41.155 _cell.length_c 52.742 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QXJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 136 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 108 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 115 A CYS 136 1_555 A SG CYS 182 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 147 A CYS 168 1_555 A SG CYS 161 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 172 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? covale ? covale1 A NE2 HIS 41 A HIS 57 1_555 D CAS K7J . A K7J 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale2 A OG SER 176 A SER 195 1_555 D CAR K7J . A K7J 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? metalc ? metalc1 A ND1 HIS 25 A HIS 41 1_555 C CU CU . A CU 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc2 A NE2 HIS 80 A HIS 99 1_555 B CU CU . A CU 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc3 B CU CU . A CU 500 1_555 E O HOH . A HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc4 B CU CU . A CU 500 1_555 E O HOH . A HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc5 C CU CU . A CU 600 1_555 E O HOH . A HOH 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? # _chem_comp.formula 'C25 H35 Cl N4 O7' _chem_comp.formula_weight 539.021 _chem_comp.id K7J _chem_comp.mon_nstd_flag . _chem_comp.name N-(3-carboxypropanoyl)-L-alanyl-L-alanyl-N-[(2S,3S)-4-chloro-3-hydroxy-1-phenylbutan-2-yl]-L-prolinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'SUCCINYL-ALA-ALA-PRO-PHE-CHLOROMETHYL KETONE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBG CBF K7J doub 173 n y CBF CBI K7J sing 174 n y CBF HBF K7J sing 175 n n CBI CBJ K7J doub 176 n y CBI HBI K7J sing 177 n n CBK CBJ K7J sing 178 n y CBJ HBJ K7J sing 179 n n CBH CBK K7J doub 180 n y CBK HBK K7J sing 181 n n CBG CBH K7J sing 182 n y CBH HBH K7J sing 183 n n CBD CBG K7J sing 184 n n CAQ CBD K7J sing 185 n n CBD HBD K7J sing 186 n n CBD HBDA K7J sing 187 n n CAR CAQ K7J sing 188 n n CAQ NAP K7J sing 189 n n CAQ HAQ K7J sing 190 n n OAE CAR K7J sing 191 n n CAS CAR K7J sing 192 n n CAR HAR K7J sing 193 n n OAE HOAE K7J sing 194 n n CAS HAS K7J sing 195 n n CAS HASA K7J sing 196 n n NAP CAO K7J sing 197 n n NAP HNAP K7J sing 198 n n OBC CAO K7J doub 199 n n CAO CAN K7J sing 200 n n CBB CAN K7J sing 201 n n CAN NAM K7J sing 202 n n CAN HAN K7J sing 203 n n CBB CBA K7J sing 204 n n CBB HBB K7J sing 205 n n CBB HBBA K7J sing 206 n n CBA CAZ K7J sing 207 n n CBA HBA K7J sing 208 n n CBA HBAA K7J sing 209 n n NAM CAZ K7J sing 210 n n CAZ HAZ K7J sing 211 n n CAZ HAZA K7J sing 212 n n NAM CAL K7J sing 213 n n OAY CAL K7J doub 214 n n CAL CAK K7J sing 215 n n CAX CAK K7J sing 216 n n CAK NAJ K7J sing 217 n n CAK HAK K7J sing 218 n n CAX HAX K7J sing 219 n n CAX HAXA K7J sing 220 n n CAX HAXB K7J sing 221 n n NAJ C K7J sing 222 n n NAJ HNAJ K7J sing 223 n n C O K7J doub 224 n n C CA K7J sing 225 n n CA CB K7J sing 226 n n CA N K7J sing 227 n n CA HA K7J sing 228 n n CB HB K7J sing 229 n n CB HBC K7J sing 230 n n CB HBE K7J sing 231 n n N CAF K7J sing 232 n n N HN K7J sing 233 n n OAU CAF K7J doub 234 n n CAF CAE K7J sing 235 n n CAE CAD K7J sing 236 n n CAE HAE K7J sing 237 n n CAE HAEA K7J sing 238 n n CAD CAB K7J sing 239 n n CAD HAD K7J sing 240 n n CAD HADA K7J sing 241 n n OAA CAB K7J doub 242 n n CAB OAC K7J sing 243 n n OAC HOAC K7J sing 244 n n CAS CL1 K7J sing 245 n n # _atom_sites.entry_id 2QXJ _atom_sites.fract_transf_matrix[1][1] 0.021925 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001126 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 500 500 CU CU . C 2 CU A 1 600 600 CU CU . D 3 K7J A 1 300 300 K7J K7J . E 4 HOH A 1 601 601 HOH WAT . E 4 HOH A 2 602 602 HOH WAT . E 4 HOH A 3 603 603 HOH WAT . E 4 HOH A 4 604 604 HOH WAT . E 4 HOH A 5 605 605 HOH WAT . E 4 HOH A 6 606 606 HOH WAT . E 4 HOH A 7 607 607 HOH WAT . E 4 HOH A 8 608 608 HOH WAT . E 4 HOH A 9 609 609 HOH WAT . E 4 HOH A 10 610 610 HOH WAT . E 4 HOH A 11 611 611 HOH WAT . E 4 HOH A 12 612 612 HOH WAT . E 4 HOH A 13 613 613 HOH WAT . E 4 HOH A 14 614 614 HOH WAT . E 4 HOH A 15 615 615 HOH WAT . E 4 HOH A 16 616 616 HOH WAT . E 4 HOH A 17 617 617 HOH WAT . E 4 HOH A 18 618 618 HOH WAT . E 4 HOH A 19 619 619 HOH WAT . E 4 HOH A 20 620 620 HOH WAT . E 4 HOH A 21 621 621 HOH WAT . E 4 HOH A 22 622 622 HOH WAT . E 4 HOH A 23 623 623 HOH WAT . E 4 HOH A 24 624 624 HOH WAT . E 4 HOH A 25 625 625 HOH WAT . E 4 HOH A 26 626 626 HOH WAT . E 4 HOH A 27 627 627 HOH WAT . E 4 HOH A 28 628 628 HOH WAT . E 4 HOH A 29 629 629 HOH WAT . E 4 HOH A 30 630 630 HOH WAT . E 4 HOH A 31 631 631 HOH WAT . E 4 HOH A 32 632 632 HOH WAT . E 4 HOH A 33 633 633 HOH WAT . E 4 HOH A 34 634 634 HOH WAT . E 4 HOH A 35 635 635 HOH WAT . E 4 HOH A 36 636 636 HOH WAT . E 4 HOH A 37 637 637 HOH WAT . E 4 HOH A 38 638 638 HOH WAT . E 4 HOH A 39 639 639 HOH WAT . E 4 HOH A 40 640 640 HOH WAT . E 4 HOH A 41 641 641 HOH WAT . E 4 HOH A 42 642 642 HOH WAT . E 4 HOH A 43 643 643 HOH WAT . E 4 HOH A 44 644 644 HOH WAT . E 4 HOH A 45 645 645 HOH WAT . E 4 HOH A 46 646 646 HOH WAT . E 4 HOH A 47 647 647 HOH WAT . E 4 HOH A 48 648 648 HOH WAT . E 4 HOH A 49 649 649 HOH WAT . E 4 HOH A 50 650 650 HOH WAT . E 4 HOH A 51 651 651 HOH WAT . E 4 HOH A 52 652 652 HOH WAT . E 4 HOH A 53 653 653 HOH WAT . E 4 HOH A 54 654 654 HOH WAT . E 4 HOH A 55 655 655 HOH WAT . E 4 HOH A 56 656 656 HOH WAT . E 4 HOH A 57 657 657 HOH WAT . E 4 HOH A 58 658 658 HOH WAT . E 4 HOH A 59 659 659 HOH WAT . E 4 HOH A 60 660 660 HOH WAT . E 4 HOH A 61 661 661 HOH WAT . E 4 HOH A 62 662 662 HOH WAT . E 4 HOH A 63 663 663 HOH WAT . E 4 HOH A 64 664 664 HOH WAT . E 4 HOH A 65 665 665 HOH WAT . E 4 HOH A 66 666 666 HOH WAT . E 4 HOH A 67 667 667 HOH WAT . E 4 HOH A 68 668 668 HOH WAT . E 4 HOH A 69 669 669 HOH WAT . E 4 HOH A 70 670 670 HOH WAT . E 4 HOH A 71 671 671 HOH WAT . E 4 HOH A 72 672 672 HOH WAT . E 4 HOH A 73 673 673 HOH WAT . E 4 HOH A 74 674 674 HOH WAT . E 4 HOH A 75 675 675 HOH WAT . E 4 HOH A 76 676 676 HOH WAT . E 4 HOH A 77 677 677 HOH WAT . E 4 HOH A 78 678 678 HOH WAT . E 4 HOH A 79 679 679 HOH WAT . E 4 HOH A 80 680 680 HOH WAT . E 4 HOH A 81 681 681 HOH WAT . E 4 HOH A 82 682 682 HOH WAT . E 4 HOH A 83 683 683 HOH WAT . E 4 HOH A 84 684 684 HOH WAT . E 4 HOH A 85 685 685 HOH WAT . E 4 HOH A 86 686 686 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAF K7J . . . D 3 -10.641 -14.57 8.689 1 74.09 ? CAF K7J 300 A 1 HETATM 2 O OAU K7J . . . D 3 -10.473 -13.538 8.04 1 74.3 ? OAU K7J 300 A 1 HETATM 3 C CAE K7J . . . D 3 -12.02 -15.229 8.768 1 76.64 ? CAE K7J 300 A 1 HETATM 4 C CAD K7J . . . D 3 -12.232 -16.272 7.669 1 80.33 ? CAD K7J 300 A 1 HETATM 5 C CAB K7J . . . D 3 -12.768 -17.578 8.26 1 81.67 ? CAB K7J 300 A 1 HETATM 6 O OAA K7J . . . D 3 -13.572 -17.486 9.213 1 82.8 ? OAA K7J 300 A 1 HETATM 7 O OAC K7J . . . D 3 -12.361 -18.642 7.746 1 82.99 ? OAC K7J 300 A 1 HETATM 8 N N K7J . . . D 3 -9.688 -15.198 9.375 1 72.66 ? N K7J 300 A 1 HETATM 9 C CA K7J . . . D 3 -8.293 -14.742 9.487 1 64.54 ? CA K7J 300 A 1 HETATM 10 C C K7J . . . D 3 -7.567 -14.685 8.142 1 60.12 ? C K7J 300 A 1 HETATM 11 O O K7J . . . D 3 -7.513 -15.66 7.393 1 60.21 ? O K7J 300 A 1 HETATM 12 C CB K7J . . . D 3 -7.536 -15.693 10.416 1 64.42 ? CB K7J 300 A 1 HETATM 13 N NAJ K7J . . . D 3 -6.986 -13.512 7.909 1 51.25 ? NAJ K7J 300 A 1 HETATM 14 C CAK K7J . . . D 3 -6.206 -13.215 6.699 1 43.53 ? CAK K7J 300 A 1 HETATM 15 C CAL K7J . . . D 3 -4.881 -12.587 7.137 1 37.33 ? CAL K7J 300 A 1 HETATM 16 O OAY K7J . . . D 3 -4.877 -11.494 7.702 1 33.72 ? OAY K7J 300 A 1 HETATM 17 C CAX K7J . . . D 3 -6.965 -12.233 5.805 1 40.87 ? CAX K7J 300 A 1 HETATM 18 N NAM K7J . . . D 3 -3.723 -13.213 6.936 1 34.23 ? NAM K7J 300 A 1 HETATM 19 C CAN K7J . . . D 3 -2.413 -12.669 7.322 1 31.53 ? CAN K7J 300 A 1 HETATM 20 C CAO K7J . . . D 3 -2.065 -11.474 6.431 1 32.27 ? CAO K7J 300 A 1 HETATM 21 O OBC K7J . . . D 3 -2.233 -11.496 5.211 1 29.83 ? OBC K7J 300 A 1 HETATM 22 C CBB K7J . . . D 3 -1.453 -13.837 7.066 1 31.55 ? CBB K7J 300 A 1 HETATM 23 C CBA K7J . . . D 3 -2.12 -14.519 5.871 1 33.3 ? CBA K7J 300 A 1 HETATM 24 C CAZ K7J . . . D 3 -3.559 -14.568 6.384 1 33.96 ? CAZ K7J 300 A 1 HETATM 25 C CAR K7J . . . D 3 0.386 -9.166 6.342 1 28.8 ? CAR K7J 300 A 1 HETATM 26 O OAE K7J . . . D 3 0.738 -8.17 5.381 1 26.84 ? OAE K7J 300 A 1 HETATM 27 C CAQ K7J . . . D 3 -1.139 -9.204 6.411 1 31.18 ? CAQ K7J 300 A 1 HETATM 28 N NAP K7J . . . D 3 -1.581 -10.428 7.094 1 31 ? NAP K7J 300 A 1 HETATM 29 C CBD K7J . . . D 3 -1.628 -7.957 7.15 1 31.16 ? CBD K7J 300 A 1 HETATM 30 C CBG K7J . . . D 3 -3.134 -7.907 7.424 1 31.09 ? CBG K7J 300 A 1 HETATM 31 C CBF K7J . . . D 3 -3.555 -7.449 8.671 1 32.84 ? CBF K7J 300 A 1 HETATM 32 C CBH K7J . . . D 3 -4.072 -8.26 6.455 1 32.93 ? CBH K7J 300 A 1 HETATM 33 C CBI K7J . . . D 3 -4.913 -7.317 8.942 1 31.39 ? CBI K7J 300 A 1 HETATM 34 C CBK K7J . . . D 3 -5.43 -8.13 6.729 1 32.95 ? CBK K7J 300 A 1 HETATM 35 C CBJ K7J . . . D 3 -5.851 -7.646 7.966 1 30.88 ? CBJ K7J 300 A 1 HETATM 36 C CAS K7J . . . D 3 0.995 -10.519 5.957 1 27.44 ? CAS K7J 300 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #