data_2QYL
#
_model_server_result.job_id            kPfarRQKp2-leRsuYXwkjg 
_model_server_result.datetime_utc      '2024-10-15 18:25:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2qyl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1}' 
#
_entry.id    2QYL 
#
_exptl.entry_id    2QYL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              371.346 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-[8-(3-nitrophenyl)-1,7-naphthyridin-6-yl]benzoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2QYL 
_cell.length_a            91.758 
_cell.length_b            105.353 
_cell.length_c            87.827 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2QYL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 78 A HIS 228 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc2 A NE2 HIS 88 A HIS 238 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc3 A NE2 HIS 124 A HIS 274 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc4 A OD2 ASP 125 A ASP 275 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc5 A OD1 ASP 125 A ASP 275 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc6 A OD1 ASP 127 A ASP 277 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc7 A OD1 ASP 242 A ASP 392 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc8 B ZN ZN . A ZN 501 1_555 F O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc9 C MG MG . A MG 502 1_555 F O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc10 C MG MG . A MG 502 1_555 F O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc11 C MG MG . A MG 502 1_555 F O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc12 C MG MG . A MG 502 1_555 F O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc13 C MG MG . A MG 502 1_555 F O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc14 D MG MG . A MG 503 1_555 F O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc15 D MG MG . A MG 503 1_555 F O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc16 D MG MG . A MG 503 1_555 F O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc17 D MG MG . A MG 503 1_555 F O HOH . A HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
#
_chem_comp.formula           'C21 H13 N3 O4' 
_chem_comp.formula_weight    371.346 
_chem_comp.id                NPV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-[8-(3-nitrophenyl)-1,7-naphthyridin-6-yl]benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C3 NPV doub 237 n n 
O2 C3 NPV sing 238 n n 
C3 C4 NPV sing 239 n n 
C4 C5 NPV doub 240 n y 
C4 C9 NPV sing 241 n y 
C5 C6 NPV sing 242 n y 
C9 C8 NPV doub 243 n y 
C6 C7 NPV doub 244 n y 
C8 C7 NPV sing 245 n y 
C7 C10 NPV sing 246 n y 
O28 N26 NPV sing 247 n n 
C10 N19 NPV doub 248 n y 
C10 C11 NPV sing 249 n y 
N19 C18 NPV sing 250 n y 
N26 O27 NPV doub 251 n n 
N26 C24 NPV sing 252 n n 
C11 C12 NPV doub 253 n y 
C25 C24 NPV doub 254 n y 
C25 C20 NPV sing 255 n y 
C24 C23 NPV sing 256 n y 
C18 C20 NPV sing 257 n y 
C18 C17 NPV doub 258 n y 
C12 C17 NPV sing 259 n y 
C12 C13 NPV sing 260 n y 
C20 C21 NPV doub 261 n y 
C17 N16 NPV sing 262 n y 
C13 C14 NPV doub 263 n y 
C23 C22 NPV doub 264 n y 
C21 C22 NPV sing 265 n y 
N16 C15 NPV doub 266 n y 
C14 C15 NPV sing 267 n y 
C5 H5 NPV sing 268 n n 
C6 H6 NPV sing 269 n n 
C9 H9 NPV sing 270 n n 
C15 H15 NPV sing 271 n n 
C11 H11 NPV sing 272 n n 
C13 H13 NPV sing 273 n n 
O2 HO2 NPV sing 274 n n 
C8 H8 NPV sing 275 n n 
C14 H14 NPV sing 276 n n 
C25 H25 NPV sing 277 n n 
C21 H21 NPV sing 278 n n 
C22 H22 NPV sing 279 n n 
C23 H23 NPV sing 280 n n 
#
_atom_sites.entry_id                     2QYL 
_atom_sites.fract_transf_matrix[1][1]    0.010898 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009492 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011386 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 501 501 ZN ZN . 
C 3 MG A 1 502 502 MG MG . 
D 3 MG A 1 503 503 MG MG . 
E 4 NPV A 1 1 1 NPV NVP . 
F 5 HOH A 1 504 1 HOH TIP . 
F 5 HOH A 2 505 2 HOH TIP . 
F 5 HOH A 3 506 3 HOH TIP . 
F 5 HOH A 4 507 4 HOH TIP . 
F 5 HOH A 5 508 5 HOH TIP . 
F 5 HOH A 6 509 6 HOH TIP . 
F 5 HOH A 7 510 7 HOH TIP . 
F 5 HOH A 8 511 8 HOH TIP . 
F 5 HOH A 9 512 9 HOH TIP . 
F 5 HOH A 10 513 10 HOH TIP . 
F 5 HOH A 11 514 11 HOH TIP . 
F 5 HOH A 12 515 12 HOH TIP . 
F 5 HOH A 13 516 13 HOH TIP . 
F 5 HOH A 14 517 14 HOH TIP . 
F 5 HOH A 15 518 15 HOH TIP . 
F 5 HOH A 16 519 16 HOH TIP . 
F 5 HOH A 17 520 17 HOH TIP . 
F 5 HOH A 18 521 18 HOH TIP . 
F 5 HOH A 19 522 19 HOH TIP . 
F 5 HOH A 20 523 20 HOH TIP . 
F 5 HOH A 21 524 21 HOH TIP . 
F 5 HOH A 22 525 22 HOH TIP . 
F 5 HOH A 23 526 23 HOH TIP . 
F 5 HOH A 24 527 24 HOH TIP . 
F 5 HOH A 25 528 25 HOH TIP . 
F 5 HOH A 26 529 26 HOH TIP . 
F 5 HOH A 27 530 27 HOH TIP . 
F 5 HOH A 28 531 28 HOH TIP . 
F 5 HOH A 29 532 29 HOH TIP . 
F 5 HOH A 30 533 30 HOH TIP . 
F 5 HOH A 31 534 31 HOH TIP . 
F 5 HOH A 32 535 32 HOH TIP . 
F 5 HOH A 33 536 33 HOH TIP . 
F 5 HOH A 34 537 34 HOH TIP . 
F 5 HOH A 35 538 35 HOH TIP . 
F 5 HOH A 36 539 36 HOH TIP . 
F 5 HOH A 37 540 37 HOH TIP . 
F 5 HOH A 38 541 38 HOH TIP . 
F 5 HOH A 39 542 39 HOH TIP . 
F 5 HOH A 40 543 40 HOH TIP . 
F 5 HOH A 41 544 41 HOH TIP . 
F 5 HOH A 42 545 42 HOH TIP . 
F 5 HOH A 43 546 43 HOH TIP . 
F 5 HOH A 44 547 44 HOH TIP . 
F 5 HOH A 45 548 45 HOH TIP . 
F 5 HOH A 46 549 46 HOH TIP . 
F 5 HOH A 47 550 47 HOH TIP . 
F 5 HOH A 48 551 48 HOH TIP . 
F 5 HOH A 49 552 49 HOH TIP . 
F 5 HOH A 50 553 50 HOH TIP . 
F 5 HOH A 51 554 51 HOH TIP . 
F 5 HOH A 52 555 52 HOH TIP . 
F 5 HOH A 53 556 53 HOH TIP . 
F 5 HOH A 54 557 54 HOH TIP . 
F 5 HOH A 55 558 55 HOH TIP . 
F 5 HOH A 56 559 56 HOH TIP . 
F 5 HOH A 57 560 57 HOH TIP . 
F 5 HOH A 58 561 58 HOH TIP . 
F 5 HOH A 59 562 59 HOH TIP . 
F 5 HOH A 60 563 60 HOH TIP . 
F 5 HOH A 61 564 61 HOH TIP . 
F 5 HOH A 62 565 62 HOH TIP . 
F 5 HOH A 63 566 63 HOH TIP . 
F 5 HOH A 64 567 64 HOH TIP . 
F 5 HOH A 65 568 65 HOH TIP . 
F 5 HOH A 66 569 66 HOH TIP . 
F 5 HOH A 67 570 67 HOH TIP . 
F 5 HOH A 68 571 68 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 NPV . . . E 4 38.775 31.006 -5.33 1 45.91 ? C4 NPV 1 A 1 
HETATM 2 C C5 NPV . . . E 4 39.568 30.555 -4.279 1 43.37 ? C5 NPV 1 A 1 
HETATM 3 C C6 NPV . . . E 4 39.569 31.231 -3.063 1 42.66 ? C6 NPV 1 A 1 
HETATM 4 C C7 NPV . . . E 4 38.773 32.359 -2.894 1 42 ? C7 NPV 1 A 1 
HETATM 5 C C9 NPV . . . E 4 37.983 32.136 -5.163 1 46.5 ? C9 NPV 1 A 1 
HETATM 6 C C10 NPV . . . E 4 38.719 33.043 -1.685 1 42.09 ? C10 NPV 1 A 1 
HETATM 7 C C15 NPV . . . E 4 39.354 35.149 2.722 1 40.25 ? C15 NPV 1 A 1 
HETATM 8 C C11 NPV . . . E 4 39.704 32.891 -0.714 1 40.81 ? C11 NPV 1 A 1 
HETATM 9 C C12 NPV . . . E 4 39.614 33.636 0.456 1 41.66 ? C12 NPV 1 A 1 
HETATM 10 C C13 NPV . . . E 4 40.575 33.52 1.453 1 39.4 ? C13 NPV 1 A 1 
HETATM 11 C C3 NPV . . . E 4 38.753 30.336 -6.537 1 48.14 ? C3 NPV 1 A 1 
HETATM 12 O O1 NPV . . . E 4 38.053 30.814 -7.457 1 48.58 ? O1 NPV 1 A 1 
HETATM 13 O O2 NPV . . . E 4 39.425 29.288 -6.644 1 48.37 ? O2 NPV 1 A 1 
HETATM 14 C C8 NPV . . . E 4 37.984 32.81 -3.947 1 44.12 ? C8 NPV 1 A 1 
HETATM 15 N N19 NPV . . . E 4 37.702 33.894 -1.482 1 40.1 ? N19 NPV 1 A 1 
HETATM 16 C C14 NPV . . . E 4 40.439 34.289 2.603 1 39.87 ? C14 NPV 1 A 1 
HETATM 17 N N16 NPV . . . E 4 38.454 35.242 1.758 1 40.61 ? N16 NPV 1 A 1 
HETATM 18 C C17 NPV . . . E 4 38.551 34.515 0.636 1 40.65 ? C17 NPV 1 A 1 
HETATM 19 C C18 NPV . . . E 4 37.592 34.625 -0.365 1 42.09 ? C18 NPV 1 A 1 
HETATM 20 C C20 NPV . . . E 4 36.51 35.49 -0.241 1 44.4 ? C20 NPV 1 A 1 
HETATM 21 C C25 NPV . . . E 4 35.233 35.029 -0.536 1 45.98 ? C25 NPV 1 A 1 
HETATM 22 C C21 NPV . . . E 4 36.706 36.825 0.098 1 46.37 ? C21 NPV 1 A 1 
HETATM 23 C C22 NPV . . . E 4 35.624 37.696 0.134 1 47.58 ? C22 NPV 1 A 1 
HETATM 24 C C23 NPV . . . E 4 34.346 37.234 -0.167 1 48.13 ? C23 NPV 1 A 1 
HETATM 25 C C24 NPV . . . E 4 34.149 35.901 -0.504 1 50.72 ? C24 NPV 1 A 1 
HETATM 26 N N26 NPV . . . E 4 32.932 35.459 -0.812 1 52.08 ? N26 NPV 1 A 1 
HETATM 27 O O27 NPV . . . E 4 31.987 36.213 -0.792 1 56.06 ? O27 NPV 1 A 1 
HETATM 28 O O28 NPV . . . E 4 32.764 34.298 -1.107 1 55.57 ? O28 NPV 1 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           28 
#