data_2QYO # _model_server_result.job_id DYJ4mimWg7apyKIkr4XEDw _model_server_result.datetime_utc '2024-10-12 08:26:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qyo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":701}' # _entry.id 2QYO # _exptl.entry_id 2QYO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.263 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,7-dihydroxy-3-(4-methoxyphenyl)-4H-chromen-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.94 _cell.angle_gamma 90 _cell.entry_id 2QYO _cell.length_a 44.54 _cell.length_b 82.049 _cell.length_c 101.034 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QYO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 L N N ? 4 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 262 A HIS 262 1_555 C K K . A K 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc2 A OD1 ASP 293 A ASP 293 1_555 C K K . A K 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc3 A OE1 GLU 323 A GLU 323 1_555 C K K . A K 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc4 A OE2 GLU 323 A GLU 323 1_555 C K K . A K 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc5 C K K . A K 358 1_555 T O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc6 B ND1 HIS 262 B HIS 262 1_555 O K K . B K 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc7 B OD2 ASP 293 B ASP 293 1_555 O K K . B K 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc8 B OE1 GLU 323 B GLU 323 1_555 O K K . B K 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc9 B OE2 GLU 323 B GLU 323 1_555 O K K . B K 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc10 O K K . B K 360 1_555 U O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? # _chem_comp.formula 'C16 H12 O5' _chem_comp.formula_weight 284.263 _chem_comp.id QSO _chem_comp.mon_nstd_flag . _chem_comp.name 5,7-dihydroxy-3-(4-methoxyphenyl)-4H-chromen-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Biochanin A' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 QSO sing 277 n n O1 C8A QSO sing 278 n n C8 C8A QSO doub 279 n y C8 C7 QSO sing 280 n y C2 C3 QSO doub 281 n n O4 C7 QSO sing 282 n n C8A C4A QSO sing 283 n y C7 C6 QSO doub 284 n y C6' C5' QSO doub 285 n y C6' C1' QSO sing 286 n y C3 C1' QSO sing 287 n n C3 C4 QSO sing 288 n n C5' C4' QSO sing 289 n y C1' C2' QSO doub 290 n y C4A C4 QSO sing 291 n n C4A C5 QSO doub 292 n y CM O5 QSO sing 293 n n C6 C5 QSO sing 294 n y C4 O2 QSO doub 295 n n C4' O5 QSO sing 296 n n C4' C3' QSO doub 297 n y C2' C3' QSO sing 298 n y C5 O3 QSO sing 299 n n C2 H2 QSO sing 300 n n O4 HO4 QSO sing 301 n n C6 H6 QSO sing 302 n n C8 H8 QSO sing 303 n n C2' H2' QSO sing 304 n n C3' H3' QSO sing 305 n n C5' H5' QSO sing 306 n n C6' H6' QSO sing 307 n n O3 HO3 QSO sing 308 n n CM HM1 QSO sing 309 n n CM HM2 QSO sing 310 n n CM HM3 QSO sing 311 n n # _atom_sites.entry_id 2QYO _atom_sites.fract_transf_matrix[1][1] 0.022452 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004748 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012188 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010117 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 358 358 K K . D 2 K A 1 359 359 K K . E 2 K A 1 360 360 K K . F 2 K A 1 361 361 K K . G 2 K A 1 362 362 K K . H 2 K A 1 363 363 K K . I 2 K A 1 364 364 K K . J 2 K A 1 365 365 K K . K 3 SAH A 1 601 601 SAH SAH . L 4 QSO A 1 701 701 QSO QSO . M 2 K B 1 358 358 K K . N 2 K B 1 359 359 K K . O 2 K B 1 360 360 K K . P 2 K B 1 361 361 K K . Q 2 K B 1 362 362 K K . R 3 SAH B 1 602 602 SAH SAH . S 4 QSO B 1 701 701 QSO QSO . T 5 HOH A 1 703 703 HOH HOH . T 5 HOH A 2 704 704 HOH HOH . T 5 HOH A 3 705 705 HOH HOH . T 5 HOH A 4 706 706 HOH HOH . T 5 HOH A 5 707 707 HOH HOH . T 5 HOH A 6 708 708 HOH HOH . T 5 HOH A 7 709 709 HOH HOH . T 5 HOH A 8 710 710 HOH HOH . T 5 HOH A 9 711 711 HOH HOH . T 5 HOH A 10 712 712 HOH HOH . T 5 HOH A 11 713 713 HOH HOH . T 5 HOH A 12 714 714 HOH HOH . T 5 HOH A 13 715 715 HOH HOH . T 5 HOH A 14 716 716 HOH HOH . T 5 HOH A 15 717 717 HOH HOH . T 5 HOH A 16 718 718 HOH HOH . T 5 HOH A 17 719 719 HOH HOH . T 5 HOH A 18 720 720 HOH HOH . T 5 HOH A 19 721 721 HOH HOH . T 5 HOH A 20 722 722 HOH HOH . T 5 HOH A 21 723 723 HOH HOH . T 5 HOH A 22 724 724 HOH HOH . T 5 HOH A 23 725 725 HOH HOH . T 5 HOH A 24 726 726 HOH HOH . T 5 HOH A 25 727 727 HOH HOH . T 5 HOH A 26 728 728 HOH HOH . T 5 HOH A 27 729 729 HOH HOH . T 5 HOH A 28 730 730 HOH HOH . T 5 HOH A 29 731 731 HOH HOH . T 5 HOH A 30 732 732 HOH HOH . T 5 HOH A 31 733 733 HOH HOH . T 5 HOH A 32 734 734 HOH HOH . T 5 HOH A 33 735 735 HOH HOH . T 5 HOH A 34 736 736 HOH HOH . T 5 HOH A 35 737 737 HOH HOH . T 5 HOH A 36 738 738 HOH HOH . T 5 HOH A 37 739 739 HOH HOH . T 5 HOH A 38 740 740 HOH HOH . T 5 HOH A 39 741 741 HOH HOH . T 5 HOH A 40 742 742 HOH HOH . T 5 HOH A 41 743 743 HOH HOH . T 5 HOH A 42 744 744 HOH HOH . T 5 HOH A 43 745 745 HOH HOH . T 5 HOH A 44 746 746 HOH HOH . T 5 HOH A 45 747 747 HOH HOH . T 5 HOH A 46 748 748 HOH HOH . T 5 HOH A 47 749 749 HOH HOH . T 5 HOH A 48 750 750 HOH HOH . T 5 HOH A 49 751 751 HOH HOH . T 5 HOH A 50 752 752 HOH HOH . T 5 HOH A 51 753 753 HOH HOH . T 5 HOH A 52 754 754 HOH HOH . T 5 HOH A 53 755 755 HOH HOH . T 5 HOH A 54 756 756 HOH HOH . T 5 HOH A 55 757 757 HOH HOH . T 5 HOH A 56 758 758 HOH HOH . T 5 HOH A 57 759 759 HOH HOH . T 5 HOH A 58 760 760 HOH HOH . T 5 HOH A 59 761 761 HOH HOH . T 5 HOH A 60 762 762 HOH HOH . T 5 HOH A 61 763 763 HOH HOH . T 5 HOH A 62 764 764 HOH HOH . T 5 HOH A 63 765 765 HOH HOH . T 5 HOH A 64 766 766 HOH HOH . T 5 HOH A 65 767 767 HOH HOH . T 5 HOH A 66 768 768 HOH HOH . T 5 HOH A 67 769 769 HOH HOH . T 5 HOH A 68 770 770 HOH HOH . T 5 HOH A 69 771 771 HOH HOH . T 5 HOH A 70 772 772 HOH HOH . T 5 HOH A 71 773 773 HOH HOH . T 5 HOH A 72 774 774 HOH HOH . T 5 HOH A 73 775 775 HOH HOH . T 5 HOH A 74 776 776 HOH HOH . T 5 HOH A 75 777 777 HOH HOH . T 5 HOH A 76 778 778 HOH HOH . T 5 HOH A 77 779 779 HOH HOH . T 5 HOH A 78 780 780 HOH HOH . T 5 HOH A 79 781 781 HOH HOH . T 5 HOH A 80 782 782 HOH HOH . T 5 HOH A 81 783 783 HOH HOH . T 5 HOH A 82 784 784 HOH HOH . T 5 HOH A 83 785 785 HOH HOH . T 5 HOH A 84 786 786 HOH HOH . T 5 HOH A 85 787 787 HOH HOH . T 5 HOH A 86 788 788 HOH HOH . T 5 HOH A 87 789 789 HOH HOH . T 5 HOH A 88 790 790 HOH HOH . T 5 HOH A 89 791 791 HOH HOH . T 5 HOH A 90 792 792 HOH HOH . T 5 HOH A 91 793 793 HOH HOH . T 5 HOH A 92 794 794 HOH HOH . T 5 HOH A 93 795 795 HOH HOH . T 5 HOH A 94 796 796 HOH HOH . U 5 HOH B 1 703 703 HOH HOH . U 5 HOH B 2 704 704 HOH HOH . U 5 HOH B 3 705 705 HOH HOH . U 5 HOH B 4 706 706 HOH HOH . U 5 HOH B 5 707 707 HOH HOH . U 5 HOH B 6 708 708 HOH HOH . U 5 HOH B 7 709 709 HOH HOH . U 5 HOH B 8 710 710 HOH HOH . U 5 HOH B 9 711 711 HOH HOH . U 5 HOH B 10 712 712 HOH HOH . U 5 HOH B 11 713 713 HOH HOH . U 5 HOH B 12 714 714 HOH HOH . U 5 HOH B 13 715 715 HOH HOH . U 5 HOH B 14 716 716 HOH HOH . U 5 HOH B 15 717 717 HOH HOH . U 5 HOH B 16 718 718 HOH HOH . U 5 HOH B 17 719 719 HOH HOH . U 5 HOH B 18 720 720 HOH HOH . U 5 HOH B 19 721 721 HOH HOH . U 5 HOH B 20 722 722 HOH HOH . U 5 HOH B 21 723 723 HOH HOH . U 5 HOH B 22 724 724 HOH HOH . U 5 HOH B 23 725 725 HOH HOH . U 5 HOH B 24 726 726 HOH HOH . U 5 HOH B 25 727 727 HOH HOH . U 5 HOH B 26 728 728 HOH HOH . U 5 HOH B 27 729 729 HOH HOH . U 5 HOH B 28 730 730 HOH HOH . U 5 HOH B 29 731 731 HOH HOH . U 5 HOH B 30 732 732 HOH HOH . U 5 HOH B 31 733 733 HOH HOH . U 5 HOH B 32 734 734 HOH HOH . U 5 HOH B 33 735 735 HOH HOH . U 5 HOH B 34 736 736 HOH HOH . U 5 HOH B 35 737 737 HOH HOH . U 5 HOH B 36 738 738 HOH HOH . U 5 HOH B 37 739 739 HOH HOH . U 5 HOH B 38 740 740 HOH HOH . U 5 HOH B 39 741 741 HOH HOH . U 5 HOH B 40 742 742 HOH HOH . U 5 HOH B 41 743 743 HOH HOH . U 5 HOH B 42 744 744 HOH HOH . U 5 HOH B 43 745 745 HOH HOH . U 5 HOH B 44 746 746 HOH HOH . U 5 HOH B 45 747 747 HOH HOH . U 5 HOH B 46 748 748 HOH HOH . U 5 HOH B 47 749 749 HOH HOH . U 5 HOH B 48 750 750 HOH HOH . U 5 HOH B 49 751 751 HOH HOH . U 5 HOH B 50 752 752 HOH HOH . U 5 HOH B 51 753 753 HOH HOH . U 5 HOH B 52 754 754 HOH HOH . U 5 HOH B 53 755 755 HOH HOH . U 5 HOH B 54 756 756 HOH HOH . U 5 HOH B 55 757 757 HOH HOH . U 5 HOH B 56 758 758 HOH HOH . U 5 HOH B 57 759 759 HOH HOH . U 5 HOH B 58 760 760 HOH HOH . U 5 HOH B 59 761 761 HOH HOH . U 5 HOH B 60 762 762 HOH HOH . U 5 HOH B 61 763 763 HOH HOH . U 5 HOH B 62 764 764 HOH HOH . U 5 HOH B 63 765 765 HOH HOH . U 5 HOH B 64 766 766 HOH HOH . U 5 HOH B 65 767 767 HOH HOH . U 5 HOH B 66 768 768 HOH HOH . U 5 HOH B 67 769 769 HOH HOH . U 5 HOH B 68 770 770 HOH HOH . U 5 HOH B 69 771 771 HOH HOH . U 5 HOH B 70 772 772 HOH HOH . U 5 HOH B 71 773 773 HOH HOH . U 5 HOH B 72 774 774 HOH HOH . U 5 HOH B 73 775 775 HOH HOH . U 5 HOH B 74 776 776 HOH HOH . U 5 HOH B 75 777 777 HOH HOH . U 5 HOH B 76 778 778 HOH HOH . U 5 HOH B 77 779 779 HOH HOH . U 5 HOH B 78 780 780 HOH HOH . U 5 HOH B 79 781 781 HOH HOH . U 5 HOH B 80 782 782 HOH HOH . U 5 HOH B 81 783 783 HOH HOH . U 5 HOH B 82 784 784 HOH HOH . U 5 HOH B 83 785 785 HOH HOH . U 5 HOH B 84 786 786 HOH HOH . U 5 HOH B 85 787 787 HOH HOH . U 5 HOH B 86 788 788 HOH HOH . U 5 HOH B 87 789 789 HOH HOH . U 5 HOH B 88 790 790 HOH HOH . U 5 HOH B 89 791 791 HOH HOH . U 5 HOH B 90 792 792 HOH HOH . U 5 HOH B 91 793 793 HOH HOH . U 5 HOH B 92 794 794 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 QSO . . . S 4 -6.312 3.975 36.657 1 71 ? C2 QSO 701 B 1 HETATM 2 C C4 QSO . . . S 4 -8.195 2.545 37.388 1 71.06 ? C4 QSO 701 B 1 HETATM 3 O O4 QSO . . . S 4 -9.128 1.699 31.785 1 67.44 ? O4 QSO 701 B 1 HETATM 4 C C4A QSO . . . S 4 -8.486 2.292 35.924 1 69.96 ? C4A QSO 701 B 1 HETATM 5 C C8A QSO . . . S 4 -7.618 2.94 34.964 1 68.6 ? C8A QSO 701 B 1 HETATM 6 C C7 QSO . . . S 4 -8.93 1.885 33.114 1 68.14 ? C7 QSO 701 B 1 HETATM 7 C C6 QSO . . . S 4 -9.762 1.269 34.093 1 68.82 ? C6 QSO 701 B 1 HETATM 8 C C5 QSO . . . S 4 -9.575 1.445 35.495 1 69.24 ? C5 QSO 701 B 1 HETATM 9 C C8 QSO . . . S 4 -7.874 2.711 33.582 1 68.36 ? C8 QSO 701 B 1 HETATM 10 C C3 QSO . . . S 4 -7.018 3.451 37.708 1 71.2 ? C3 QSO 701 B 1 HETATM 11 O O1 QSO . . . S 4 -6.564 3.759 35.31 1 69.41 ? O1 QSO 701 B 1 HETATM 12 C C1' QSO . . . S 4 -6.649 3.739 39.119 1 72.13 ? C1' QSO 701 B 1 HETATM 13 O O2 QSO . . . S 4 -8.872 2.045 38.292 1 71.77 ? O2 QSO 701 B 1 HETATM 14 C C2' QSO . . . S 4 -7.113 4.886 39.837 1 72.61 ? C2' QSO 701 B 1 HETATM 15 C C3' QSO . . . S 4 -6.724 5.107 41.192 1 73.2 ? C3' QSO 701 B 1 HETATM 16 C C4' QSO . . . S 4 -5.86 4.199 41.891 1 73.77 ? C4' QSO 701 B 1 HETATM 17 C C5' QSO . . . S 4 -5.405 3.053 41.158 1 73.77 ? C5' QSO 701 B 1 HETATM 18 C C6' QSO . . . S 4 -5.788 2.83 39.81 1 72.96 ? C6' QSO 701 B 1 HETATM 19 O O5 QSO . . . S 4 -5.489 4.415 43.201 1 73.97 ? O5 QSO 701 B 1 HETATM 20 O O3 QSO . . . S 4 -10.428 0.808 36.35 1 69.85 ? O3 QSO 701 B 1 HETATM 21 C CM QSO . . . S 4 -4.111 4.71 43.384 1 74.05 ? CM QSO 701 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #