data_2QYT
#
_model_server_result.job_id            1gdSnOwoVi6aFUPccB8_8w 
_model_server_result.datetime_utc      '2024-11-05 04:22:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2qyt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":320}' 
#
_entry.id    2QYT 
#
_exptl.entry_id    2QYT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2QYT 
_cell.length_a            79.577 
_cell.length_b            79.577 
_cell.length_c            98.26 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2QYT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 25 A ALA 22 1_555 A N MSE 26 A MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C MSE 26 A MSE 23 1_555 A N LEU 27 A LEU 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 A C ASP 95 A ASP 92 1_555 A N MSE 96 A MSE 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 A C MSE 96 A MSE 93 1_555 A N GLU 97 A GLU 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale5 A C PRO 105 A PRO 102 1_555 A N MSE 106 A MSE 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C MSE 106 A MSE 103 1_555 A N ILE 107 A ILE 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale7 A C ARG 125 A ARG 122 1_555 A N MSE 126 A MSE 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale8 A C MSE 126 A MSE 123 1_555 A N ARG 127 A ARG 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 A C ILE 198 A ILE 195 1_555 A N MSE 199 A MSE 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale10 A C MSE 199 A MSE 196 1_555 A N LYS 200 A LYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale11 A C PHE 202 A PHE 199 1_555 A N MSE 203 A MSE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale12 A C MSE 203 A MSE 200 1_555 A N MSE 204 A MSE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale13 A C MSE 204 A MSE 201 1_555 A N ILE 205 A ILE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale14 A C LYS 262 A LYS 259 1_555 A N MSE 263 A MSE 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
covale ? covale15 A C PRO 302 A PRO 299 1_555 A N MSE 303 A MSE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale16 A C MSE 303 A MSE 300 1_555 A N TYR 304 A TYR 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale17 A C ARG 306 A ARG 303 1_555 A N MSE 307 A MSE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale18 A C MSE 307 A MSE 304 1_555 A N TYR 308 A TYR 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     2QYT 
_atom_sites.fract_transf_matrix[1][1]    0.012566 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012566 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010177 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 315 1 SO4 SO4 . 
C 2 SO4 A 1 316 2 SO4 SO4 . 
D 2 SO4 A 1 317 3 SO4 SO4 . 
E 2 SO4 A 1 318 4 SO4 SO4 . 
F 2 SO4 A 1 319 5 SO4 SO4 . 
G 3 EDO A 1 320 1 EDO EDO . 
H 3 EDO A 1 321 2 EDO EDO . 
I 3 EDO A 1 322 3 EDO EDO . 
J 3 EDO A 1 323 4 EDO EDO . 
K 3 EDO A 1 324 5 EDO EDO . 
L 4 HOH A 1 325 1 HOH HOH . 
L 4 HOH A 2 326 2 HOH HOH . 
L 4 HOH A 3 327 3 HOH HOH . 
L 4 HOH A 4 328 4 HOH HOH . 
L 4 HOH A 5 329 5 HOH HOH . 
L 4 HOH A 6 330 6 HOH HOH . 
L 4 HOH A 7 331 7 HOH HOH . 
L 4 HOH A 8 332 8 HOH HOH . 
L 4 HOH A 9 333 9 HOH HOH . 
L 4 HOH A 10 334 10 HOH HOH . 
L 4 HOH A 11 335 11 HOH HOH . 
L 4 HOH A 12 336 12 HOH HOH . 
L 4 HOH A 13 337 13 HOH HOH . 
L 4 HOH A 14 338 14 HOH HOH . 
L 4 HOH A 15 339 15 HOH HOH . 
L 4 HOH A 16 340 16 HOH HOH . 
L 4 HOH A 17 341 17 HOH HOH . 
L 4 HOH A 18 342 18 HOH HOH . 
L 4 HOH A 19 343 19 HOH HOH . 
L 4 HOH A 20 344 20 HOH HOH . 
L 4 HOH A 21 345 21 HOH HOH . 
L 4 HOH A 22 346 22 HOH HOH . 
L 4 HOH A 23 347 23 HOH HOH . 
L 4 HOH A 24 348 24 HOH HOH . 
L 4 HOH A 25 349 25 HOH HOH . 
L 4 HOH A 26 350 26 HOH HOH . 
L 4 HOH A 27 351 27 HOH HOH . 
L 4 HOH A 28 352 28 HOH HOH . 
L 4 HOH A 29 353 29 HOH HOH . 
L 4 HOH A 30 354 30 HOH HOH . 
L 4 HOH A 31 355 31 HOH HOH . 
L 4 HOH A 32 356 32 HOH HOH . 
L 4 HOH A 33 357 33 HOH HOH . 
L 4 HOH A 34 358 34 HOH HOH . 
L 4 HOH A 35 359 35 HOH HOH . 
L 4 HOH A 36 360 36 HOH HOH . 
L 4 HOH A 37 361 37 HOH HOH . 
L 4 HOH A 38 362 38 HOH HOH . 
L 4 HOH A 39 363 39 HOH HOH . 
L 4 HOH A 40 364 40 HOH HOH . 
L 4 HOH A 41 365 41 HOH HOH . 
L 4 HOH A 42 366 42 HOH HOH . 
L 4 HOH A 43 367 43 HOH HOH . 
L 4 HOH A 44 368 44 HOH HOH . 
L 4 HOH A 45 369 45 HOH HOH . 
L 4 HOH A 46 370 46 HOH HOH . 
L 4 HOH A 47 371 47 HOH HOH . 
L 4 HOH A 48 372 48 HOH HOH . 
L 4 HOH A 49 373 49 HOH HOH . 
L 4 HOH A 50 374 50 HOH HOH . 
L 4 HOH A 51 375 51 HOH HOH . 
L 4 HOH A 52 376 52 HOH HOH . 
L 4 HOH A 53 377 53 HOH HOH . 
L 4 HOH A 54 378 54 HOH HOH . 
L 4 HOH A 55 379 55 HOH HOH . 
L 4 HOH A 56 380 56 HOH HOH . 
L 4 HOH A 57 381 57 HOH HOH . 
L 4 HOH A 58 382 58 HOH HOH . 
L 4 HOH A 59 383 59 HOH HOH . 
L 4 HOH A 60 384 60 HOH HOH . 
L 4 HOH A 61 385 61 HOH HOH . 
L 4 HOH A 62 386 62 HOH HOH . 
L 4 HOH A 63 387 63 HOH HOH . 
L 4 HOH A 64 388 64 HOH HOH . 
L 4 HOH A 65 389 65 HOH HOH . 
L 4 HOH A 66 390 66 HOH HOH . 
L 4 HOH A 67 391 67 HOH HOH . 
L 4 HOH A 68 392 68 HOH HOH . 
L 4 HOH A 69 393 69 HOH HOH . 
L 4 HOH A 70 394 70 HOH HOH . 
L 4 HOH A 71 395 71 HOH HOH . 
L 4 HOH A 72 396 72 HOH HOH . 
L 4 HOH A 73 397 73 HOH HOH . 
L 4 HOH A 74 398 74 HOH HOH . 
L 4 HOH A 75 399 75 HOH HOH . 
L 4 HOH A 76 400 76 HOH HOH . 
L 4 HOH A 77 401 77 HOH HOH . 
L 4 HOH A 78 402 78 HOH HOH . 
L 4 HOH A 79 403 79 HOH HOH . 
L 4 HOH A 80 404 80 HOH HOH . 
L 4 HOH A 81 405 81 HOH HOH . 
L 4 HOH A 82 406 82 HOH HOH . 
L 4 HOH A 83 407 83 HOH HOH . 
L 4 HOH A 84 408 84 HOH HOH . 
L 4 HOH A 85 409 85 HOH HOH . 
L 4 HOH A 86 410 86 HOH HOH . 
L 4 HOH A 87 411 87 HOH HOH . 
L 4 HOH A 88 412 88 HOH HOH . 
L 4 HOH A 89 413 89 HOH HOH . 
L 4 HOH A 90 414 90 HOH HOH . 
L 4 HOH A 91 415 91 HOH HOH . 
L 4 HOH A 92 416 92 HOH HOH . 
L 4 HOH A 93 417 93 HOH HOH . 
L 4 HOH A 94 418 94 HOH HOH . 
L 4 HOH A 95 419 95 HOH HOH . 
L 4 HOH A 96 420 96 HOH HOH . 
L 4 HOH A 97 421 97 HOH HOH . 
L 4 HOH A 98 422 99 HOH HOH . 
L 4 HOH A 99 423 100 HOH HOH . 
L 4 HOH A 100 424 101 HOH HOH . 
L 4 HOH A 101 425 102 HOH HOH . 
L 4 HOH A 102 426 103 HOH HOH . 
L 4 HOH A 103 427 104 HOH HOH . 
L 4 HOH A 104 428 105 HOH HOH . 
L 4 HOH A 105 429 106 HOH HOH . 
L 4 HOH A 106 430 107 HOH HOH . 
L 4 HOH A 107 431 108 HOH HOH . 
L 4 HOH A 108 432 109 HOH HOH . 
L 4 HOH A 109 433 110 HOH HOH . 
L 4 HOH A 110 434 111 HOH HOH . 
L 4 HOH A 111 435 112 HOH HOH . 
L 4 HOH A 112 436 113 HOH HOH . 
L 4 HOH A 113 437 114 HOH HOH . 
L 4 HOH A 114 438 115 HOH HOH . 
L 4 HOH A 115 439 116 HOH HOH . 
L 4 HOH A 116 440 117 HOH HOH . 
L 4 HOH A 117 441 118 HOH HOH . 
L 4 HOH A 118 442 119 HOH HOH . 
L 4 HOH A 119 443 120 HOH HOH . 
L 4 HOH A 120 444 121 HOH HOH . 
L 4 HOH A 121 445 122 HOH HOH . 
L 4 HOH A 122 446 123 HOH HOH . 
L 4 HOH A 123 447 124 HOH HOH . 
L 4 HOH A 124 448 125 HOH HOH . 
L 4 HOH A 125 449 126 HOH HOH . 
L 4 HOH A 126 450 127 HOH HOH . 
L 4 HOH A 127 451 128 HOH HOH . 
L 4 HOH A 128 452 129 HOH HOH . 
L 4 HOH A 129 453 130 HOH HOH . 
L 4 HOH A 130 454 131 HOH HOH . 
L 4 HOH A 131 455 132 HOH HOH . 
L 4 HOH A 132 456 133 HOH HOH . 
L 4 HOH A 133 457 134 HOH HOH . 
L 4 HOH A 134 458 135 HOH HOH . 
L 4 HOH A 135 459 136 HOH HOH . 
L 4 HOH A 136 460 137 HOH HOH . 
L 4 HOH A 137 461 138 HOH HOH . 
L 4 HOH A 138 462 139 HOH HOH . 
L 4 HOH A 139 463 140 HOH HOH . 
L 4 HOH A 140 464 141 HOH HOH . 
L 4 HOH A 141 465 143 HOH HOH . 
L 4 HOH A 142 466 144 HOH HOH . 
L 4 HOH A 143 467 145 HOH HOH . 
L 4 HOH A 144 468 146 HOH HOH . 
L 4 HOH A 145 469 147 HOH HOH . 
L 4 HOH A 146 470 148 HOH HOH . 
L 4 HOH A 147 471 149 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 3 39.239 15.074 29.737 1 15.83 ? C1 EDO 320 A 1 
HETATM 2 O O1 EDO . . . G 3 39.885 14.739 30.967 1 5.65 ? O1 EDO 320 A 1 
HETATM 3 C C2 EDO . . . G 3 39.337 13.941 28.714 1 13.9 ? C2 EDO 320 A 1 
HETATM 4 O O2 EDO . . . G 3 39.463 14.54 27.431 1 18.2 ? O2 EDO 320 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#