data_2QYU # _model_server_result.job_id -6pA160QzbnDcg11Nvl-jQ _model_server_result.datetime_utc '2024-12-21 14:58:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qyu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 2QYU # _exptl.entry_id 2QYU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.334 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2QYU _cell.length_a 79.72 _cell.length_b 79.72 _cell.length_c 212.731 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QYU _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H26 N2 O6' _chem_comp.formula_weight 282.334 _chem_comp.id B3P _chem_comp.mon_nstd_flag . _chem_comp.name 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 B3P sing 70 n n C1 C3 B3P sing 71 n n C1 H11 B3P sing 72 n n C1 H12 B3P sing 73 n n C2 N2 B3P sing 74 n n C2 H21 B3P sing 75 n n C2 H22 B3P sing 76 n n C3 N1 B3P sing 77 n n C3 H31 B3P sing 78 n n C3 H32 B3P sing 79 n n N1 C4 B3P sing 80 n n N1 HN1 B3P sing 81 n n C4 C5 B3P sing 82 n n C4 C6 B3P sing 83 n n C4 C7 B3P sing 84 n n C5 O4 B3P sing 85 n n C5 H51 B3P sing 86 n n C5 H52 B3P sing 87 n n C6 O5 B3P sing 88 n n C6 H61 B3P sing 89 n n C6 H62 B3P sing 90 n n C7 O6 B3P sing 91 n n C7 H71 B3P sing 92 n n C7 H72 B3P sing 93 n n N2 C8 B3P sing 94 n n N2 HN2 B3P sing 95 n n C8 C9 B3P sing 96 n n C8 C10 B3P sing 97 n n C8 C11 B3P sing 98 n n C9 O1 B3P sing 99 n n C9 H91 B3P sing 100 n n C9 H92 B3P sing 101 n n C10 O2 B3P sing 102 n n C10 H101 B3P sing 103 n n C10 H102 B3P sing 104 n n C11 O3 B3P sing 105 n n C11 H111 B3P sing 106 n n C11 H112 B3P sing 107 n n O1 HO1 B3P sing 108 n n O2 HO2 B3P sing 109 n n O3 HO3 B3P sing 110 n n O4 HO4 B3P sing 111 n n O5 HO5 B3P sing 112 n n O6 HO6 B3P sing 113 n n # _atom_sites.entry_id 2QYU _atom_sites.fract_transf_matrix[1][1] 0.012544 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012544 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004701 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 2 2 PO4 PO4 . C 3 B3P A 1 1 1 B3P B3P . D 4 HOH A 1 3 3 HOH HOH . D 4 HOH A 2 4 4 HOH HOH . D 4 HOH A 3 5 5 HOH HOH . D 4 HOH A 4 6 6 HOH HOH . D 4 HOH A 5 7 7 HOH HOH . D 4 HOH A 6 8 8 HOH HOH . D 4 HOH A 7 9 9 HOH HOH . D 4 HOH A 8 10 10 HOH HOH . D 4 HOH A 9 11 11 HOH HOH . D 4 HOH A 10 12 12 HOH HOH . D 4 HOH A 11 13 13 HOH HOH . D 4 HOH A 12 14 14 HOH HOH . D 4 HOH A 13 15 15 HOH HOH . D 4 HOH A 14 16 16 HOH HOH . D 4 HOH A 15 17 17 HOH HOH . D 4 HOH A 16 18 18 HOH HOH . D 4 HOH A 17 19 19 HOH HOH . D 4 HOH A 18 20 20 HOH HOH . D 4 HOH A 19 21 21 HOH HOH . D 4 HOH A 20 22 22 HOH HOH . D 4 HOH A 21 23 23 HOH HOH . D 4 HOH A 22 24 24 HOH HOH . D 4 HOH A 23 25 25 HOH HOH . D 4 HOH A 24 26 26 HOH HOH . D 4 HOH A 25 27 27 HOH HOH . D 4 HOH A 26 28 28 HOH HOH . D 4 HOH A 27 29 29 HOH HOH . D 4 HOH A 28 30 30 HOH HOH . D 4 HOH A 29 31 31 HOH HOH . D 4 HOH A 30 32 32 HOH HOH . D 4 HOH A 31 33 33 HOH HOH . D 4 HOH A 32 34 34 HOH HOH . D 4 HOH A 33 35 35 HOH HOH . D 4 HOH A 34 36 36 HOH HOH . D 4 HOH A 35 37 37 HOH HOH . D 4 HOH A 36 38 38 HOH HOH . D 4 HOH A 37 39 39 HOH HOH . D 4 HOH A 38 40 40 HOH HOH . D 4 HOH A 39 41 41 HOH HOH . D 4 HOH A 40 42 42 HOH HOH . D 4 HOH A 41 43 43 HOH HOH . D 4 HOH A 42 44 44 HOH HOH . D 4 HOH A 43 45 45 HOH HOH . D 4 HOH A 44 46 46 HOH HOH . D 4 HOH A 45 47 47 HOH HOH . D 4 HOH A 46 48 48 HOH HOH . D 4 HOH A 47 49 49 HOH HOH . D 4 HOH A 48 50 50 HOH HOH . D 4 HOH A 49 51 51 HOH HOH . D 4 HOH A 50 52 52 HOH HOH . D 4 HOH A 51 53 53 HOH HOH . D 4 HOH A 52 54 54 HOH HOH . D 4 HOH A 53 55 55 HOH HOH . D 4 HOH A 54 56 56 HOH HOH . D 4 HOH A 55 57 57 HOH HOH . D 4 HOH A 56 58 58 HOH HOH . D 4 HOH A 57 59 59 HOH HOH . D 4 HOH A 58 60 60 HOH HOH . D 4 HOH A 59 61 61 HOH HOH . D 4 HOH A 60 62 62 HOH HOH . D 4 HOH A 61 63 63 HOH HOH . D 4 HOH A 62 64 64 HOH HOH . D 4 HOH A 63 65 65 HOH HOH . D 4 HOH A 64 66 66 HOH HOH . D 4 HOH A 65 67 67 HOH HOH . D 4 HOH A 66 68 68 HOH HOH . D 4 HOH A 67 69 69 HOH HOH . D 4 HOH A 68 70 70 HOH HOH . D 4 HOH A 69 71 71 HOH HOH . D 4 HOH A 70 72 72 HOH HOH . D 4 HOH A 71 73 73 HOH HOH . D 4 HOH A 72 74 74 HOH HOH . D 4 HOH A 73 75 75 HOH HOH . D 4 HOH A 74 76 76 HOH HOH . D 4 HOH A 75 77 77 HOH HOH . D 4 HOH A 76 78 78 HOH HOH . D 4 HOH A 77 79 79 HOH HOH . D 4 HOH A 78 80 80 HOH HOH . D 4 HOH A 79 81 81 HOH HOH . D 4 HOH A 80 82 82 HOH HOH . D 4 HOH A 81 83 83 HOH HOH . D 4 HOH A 82 84 84 HOH HOH . D 4 HOH A 83 85 85 HOH HOH . D 4 HOH A 84 86 86 HOH HOH . D 4 HOH A 85 87 87 HOH HOH . D 4 HOH A 86 88 88 HOH HOH . D 4 HOH A 87 89 89 HOH HOH . D 4 HOH A 88 90 90 HOH HOH . D 4 HOH A 89 91 91 HOH HOH . D 4 HOH A 90 92 92 HOH HOH . D 4 HOH A 91 93 93 HOH HOH . D 4 HOH A 92 94 94 HOH HOH . D 4 HOH A 93 95 95 HOH HOH . D 4 HOH A 94 96 96 HOH HOH . D 4 HOH A 95 97 97 HOH HOH . D 4 HOH A 96 98 98 HOH HOH . D 4 HOH A 97 99 99 HOH HOH . D 4 HOH A 98 100 100 HOH HOH . D 4 HOH A 99 101 101 HOH HOH . D 4 HOH A 100 102 102 HOH HOH . D 4 HOH A 101 103 103 HOH HOH . D 4 HOH A 102 104 104 HOH HOH . D 4 HOH A 103 105 105 HOH HOH . D 4 HOH A 104 106 106 HOH HOH . D 4 HOH A 105 107 107 HOH HOH . D 4 HOH A 106 108 108 HOH HOH . D 4 HOH A 107 109 109 HOH HOH . D 4 HOH A 108 110 110 HOH HOH . D 4 HOH A 109 111 111 HOH HOH . D 4 HOH A 110 112 112 HOH HOH . D 4 HOH A 111 113 113 HOH HOH . D 4 HOH A 112 114 114 HOH HOH . D 4 HOH A 113 115 115 HOH HOH . D 4 HOH A 114 116 116 HOH HOH . D 4 HOH A 115 117 117 HOH HOH . D 4 HOH A 116 118 118 HOH HOH . D 4 HOH A 117 119 119 HOH HOH . D 4 HOH A 118 120 120 HOH HOH . D 4 HOH A 119 121 121 HOH HOH . D 4 HOH A 120 122 122 HOH HOH . D 4 HOH A 121 123 123 HOH HOH . D 4 HOH A 122 124 124 HOH HOH . D 4 HOH A 123 125 125 HOH HOH . D 4 HOH A 124 126 126 HOH HOH . D 4 HOH A 125 127 127 HOH HOH . D 4 HOH A 126 128 128 HOH HOH . D 4 HOH A 127 129 129 HOH HOH . D 4 HOH A 128 130 130 HOH HOH . D 4 HOH A 129 131 131 HOH HOH . D 4 HOH A 130 132 132 HOH HOH . D 4 HOH A 131 133 133 HOH HOH . D 4 HOH A 132 134 134 HOH HOH . D 4 HOH A 133 135 135 HOH HOH . D 4 HOH A 134 136 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B3P . . . C 3 -4.58 -24.107 66.703 1 59.52 ? C1 B3P 1 A 1 HETATM 2 C C2 B3P . . . C 3 -5.587 -24.699 67.682 1 59.16 ? C2 B3P 1 A 1 HETATM 3 C C3 B3P . . . C 3 -5.242 -22.935 65.986 1 59.82 ? C3 B3P 1 A 1 HETATM 4 N N1 B3P . . . C 3 -4.334 -22.092 65.217 1 60.03 ? N1 B3P 1 A 1 HETATM 5 C C4 B3P . . . C 3 -4.827 -20.874 64.566 1 60.6 ? C4 B3P 1 A 1 HETATM 6 C C5 B3P . . . C 3 -3.921 -19.644 64.448 1 61.24 ? C5 B3P 1 A 1 HETATM 7 C C6 B3P . . . C 3 -6.131 -20.939 63.775 1 60.43 ? C6 B3P 1 A 1 HETATM 8 C C7 B3P . . . C 3 -4.171 -21.373 63.273 1 61.35 ? C7 B3P 1 A 1 HETATM 9 N N2 B3P . . . C 3 -5.16 -25.907 68.378 1 58.6 ? N2 B3P 1 A 1 HETATM 10 C C8 B3P . . . C 3 -6.109 -26.638 69.218 1 59.45 ? C8 B3P 1 A 1 HETATM 11 C C9 B3P . . . C 3 -5.416 -27.728 70.043 1 60.21 ? C9 B3P 1 A 1 HETATM 12 C C10 B3P . . . C 3 -7.196 -27.272 68.348 1 59.02 ? C10 B3P 1 A 1 HETATM 13 C C11 B3P . . . C 3 -6.758 -25.677 70.213 1 59.65 ? C11 B3P 1 A 1 HETATM 14 O O1 B3P . . . C 3 -4.374 -28.367 69.298 1 61.26 ? O1 B3P 1 A 1 HETATM 15 O O2 B3P . . . C 3 -6.621 -27.885 67.184 1 57.89 ? O2 B3P 1 A 1 HETATM 16 O O3 B3P . . . C 3 -5.741 -25.084 71.038 1 59.01 ? O3 B3P 1 A 1 HETATM 17 O O4 B3P . . . C 3 -4.488 -18.541 65.167 1 60.83 ? O4 B3P 1 A 1 HETATM 18 O O5 B3P . . . C 3 -7.184 -20.697 64.707 1 61.77 ? O5 B3P 1 A 1 HETATM 19 O O6 B3P . . . C 3 -2.744 -21.181 63.269 1 62.05 ? O6 B3P 1 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 19 #