data_2QZ2 # _model_server_result.job_id 5mZ-hkYZdH_t49iGoSGoJw _model_server_result.datetime_utc '2025-01-11 02:57:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qz2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1141}' # _entry.id 2QZ2 # _exptl.entry_id 2QZ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2QZ2 _cell.length_a 67.326 _cell.length_b 67.326 _cell.length_c 165.401 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QZ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 XYP XYP C1 O1 . O4 HO4 . sing 2 ? 3 2 1 XYP XYP C1 O1 . O4 HO4 . sing 3 ? 3 3 2 XYP XYP C1 O1 . O4 HO4 . sing 4 ? 3 4 3 XYP XYP C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B XYP 1 B 1 XYP X 1136 XYP 2 n B XYP 2 B 2 XYP X 1135 XYP 3 n C XYP 1 C 1 XYP C 1137 XYP 3 n C XYP 2 C 2 XYP C 1138 XYP 3 n C XYP 3 C 3 XYP C 1139 XYP 3 n C XYP 4 C 4 XYP C 1140 XYP # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 92 A CYS 92 1_555 A SG CYS 111 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 B O4 XYP . B XYP 1 1_555 B C1 XYP . B XYP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 C O4 XYP . C XYP 1 1_555 C C1 XYP . C XYP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.229 ? covale ? covale3 C O4 XYP . C XYP 2 1_555 C C1 XYP . C XYP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.554 ? covale ? covale4 C O4 XYP . C XYP 3 1_555 C C1 XYP . C XYP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2QZ2 _atom_sites.fract_transf_matrix[1][1] 0.014853 _atom_sites.fract_transf_matrix[1][2] 0.008575 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017151 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006046 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA A 1 1141 1 NA NA . E 5 HOH A 1 1142 2 HOH HOH . E 5 HOH A 2 1143 3 HOH HOH . E 5 HOH A 3 1144 4 HOH HOH . E 5 HOH A 4 1145 5 HOH HOH . E 5 HOH A 5 1146 6 HOH HOH . E 5 HOH A 6 1147 7 HOH HOH . E 5 HOH A 7 1148 8 HOH HOH . E 5 HOH A 8 1149 9 HOH HOH . E 5 HOH A 9 1150 10 HOH HOH . E 5 HOH A 10 1151 11 HOH HOH . E 5 HOH A 11 1152 12 HOH HOH . E 5 HOH A 12 1153 14 HOH HOH . E 5 HOH A 13 1154 15 HOH HOH . E 5 HOH A 14 1155 16 HOH HOH . E 5 HOH A 15 1156 17 HOH HOH . E 5 HOH A 16 1157 18 HOH HOH . E 5 HOH A 17 1158 19 HOH HOH . E 5 HOH A 18 1159 20 HOH HOH . E 5 HOH A 19 1160 21 HOH HOH . E 5 HOH A 20 1161 22 HOH HOH . E 5 HOH A 21 1162 23 HOH HOH . E 5 HOH A 22 1163 24 HOH HOH . E 5 HOH A 23 1164 25 HOH HOH . E 5 HOH A 24 1165 26 HOH HOH . E 5 HOH A 25 1166 27 HOH HOH . E 5 HOH A 26 1167 29 HOH HOH . E 5 HOH A 27 1168 30 HOH HOH . E 5 HOH A 28 1169 31 HOH HOH . E 5 HOH A 29 1170 32 HOH HOH . E 5 HOH A 30 1171 33 HOH HOH . E 5 HOH A 31 1172 34 HOH HOH . E 5 HOH A 32 1173 35 HOH HOH . E 5 HOH A 33 1174 36 HOH HOH . E 5 HOH A 34 1175 37 HOH HOH . E 5 HOH A 35 1176 38 HOH HOH . E 5 HOH A 36 1177 39 HOH HOH . E 5 HOH A 37 1178 40 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -26.112 _atom_site.Cartn_y 24.496 _atom_site.Cartn_z 3.042 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1141 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #