data_2QZI # _model_server_result.job_id HArlgKwaZ8gdN7f40UbvPQ _model_server_result.datetime_utc '2024-10-14 06:20:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2qzi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":102}' # _entry.id 2QZI # _exptl.entry_id 2QZI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2QZI _cell.length_a 150.783 _cell.length_b 150.783 _cell.length_c 103.247 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2QZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H,I,J,N 2 1 C,K,L,O 3 1 D,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 21 A LEU 18 1_555 E NA NA . A NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc2 A O THR 24 A THR 21 1_555 E NA NA . A NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc3 A O ALA 26 A ALA 23 1_555 E NA NA . A NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc4 A OG1 THR 42 A THR 39 1_555 F NA NA . A NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc5 A O HIS 47 A HIS 44 1_555 F NA NA . A NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? metalc ? metalc6 B O LEU 21 B LEU 18 1_555 G NA NA . B NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc7 B O THR 24 B THR 21 1_555 G NA NA . B NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc8 B O ALA 26 B ALA 23 1_555 G NA NA . B NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc9 B OG1 THR 42 B THR 39 1_555 H NA NA . B NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc10 B O HIS 47 B HIS 44 1_555 H NA NA . B NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? metalc ? metalc11 B OG SER 98 B SER 95 1_555 I NA NA . B NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc12 C O LEU 21 C LEU 18 1_555 K NA NA . C NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc13 C O THR 24 C THR 21 1_555 K NA NA . C NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc14 C O ALA 26 C ALA 23 1_555 K NA NA . C NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc15 C OG1 THR 42 C THR 39 1_555 L NA NA . C NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc16 C O HIS 47 C HIS 44 1_555 L NA NA . C NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc17 K NA NA . C NA 101 1_555 O O HOH . C HOH 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc18 L NA NA . C NA 102 1_555 O O HOH . C HOH 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc19 G NA NA . B NA 101 1_555 N O HOH . B HOH 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc20 E NA NA . A NA 101 1_555 M O HOH . A HOH 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc21 F NA NA . A NA 102 1_555 M O HOH . A HOH 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc22 H NA NA . B NA 102 1_555 N O HOH . B HOH 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc23 I NA NA . B NA 103 1_555 N O HOH . B HOH 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N LYS 5 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C LEU 82 A LEU 79 1_555 A N MSE 83 A MSE 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 83 A MSE 80 1_555 A N ASP 84 A ASP 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale5 B C ALA 3 B ALA 0 1_555 B N MSE 4 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 B C MSE 4 B MSE 1 1_555 B N LYS 5 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 B C LEU 82 B LEU 79 1_555 B N MSE 83 B MSE 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 B C MSE 83 B MSE 80 1_555 B N ASP 84 B ASP 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale9 C C ALA 3 C ALA 0 1_555 C N MSE 4 C MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 C C MSE 4 C MSE 1 1_555 C N LYS 5 C LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale11 C C LEU 82 C LEU 79 1_555 C N MSE 83 C MSE 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale12 C C MSE 83 C MSE 80 1_555 C N ASP 84 C ASP 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale13 D C LEU 82 D LEU 79 1_555 D N MSE 83 D MSE 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale14 D C MSE 83 D MSE 80 1_555 D N ASP 84 D ASP 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2QZI _atom_sites.fract_transf_matrix[1][1] 0.006632 _atom_sites.fract_transf_matrix[1][2] 0.003829 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007658 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009686 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NA A 1 101 4 NA NA . F 2 NA A 1 102 5 NA NA . G 2 NA B 1 101 3 NA NA . H 2 NA B 1 102 6 NA NA . I 2 NA B 1 103 7 NA NA . J 3 EDO B 1 104 1 EDO EDO . K 2 NA C 1 101 1 NA NA . L 2 NA C 1 102 2 NA NA . M 4 HOH A 1 103 3 HOH HOH . M 4 HOH A 2 104 12 HOH HOH . M 4 HOH A 3 105 13 HOH HOH . M 4 HOH A 4 106 17 HOH HOH . M 4 HOH A 5 107 21 HOH HOH . M 4 HOH A 6 108 24 HOH HOH . M 4 HOH A 7 109 34 HOH HOH . M 4 HOH A 8 110 40 HOH HOH . M 4 HOH A 9 111 41 HOH HOH . M 4 HOH A 10 112 42 HOH HOH . M 4 HOH A 11 113 44 HOH HOH . M 4 HOH A 12 114 47 HOH HOH . M 4 HOH A 13 115 49 HOH HOH . M 4 HOH A 14 116 50 HOH HOH . M 4 HOH A 15 117 54 HOH HOH . M 4 HOH A 16 118 55 HOH HOH . M 4 HOH A 17 119 56 HOH HOH . M 4 HOH A 18 120 58 HOH HOH . M 4 HOH A 19 121 60 HOH HOH . M 4 HOH A 20 122 65 HOH HOH . M 4 HOH A 21 123 66 HOH HOH . M 4 HOH A 22 124 67 HOH HOH . M 4 HOH A 23 125 69 HOH HOH . M 4 HOH A 24 126 71 HOH HOH . M 4 HOH A 25 127 73 HOH HOH . M 4 HOH A 26 128 82 HOH HOH . M 4 HOH A 27 129 83 HOH HOH . M 4 HOH A 28 130 86 HOH HOH . M 4 HOH A 29 131 94 HOH HOH . M 4 HOH A 30 132 105 HOH HOH . M 4 HOH A 31 133 106 HOH HOH . M 4 HOH A 32 134 114 HOH HOH . M 4 HOH A 33 135 118 HOH HOH . M 4 HOH A 34 136 120 HOH HOH . M 4 HOH A 35 137 125 HOH HOH . M 4 HOH A 36 138 126 HOH HOH . M 4 HOH A 37 139 129 HOH HOH . M 4 HOH A 38 140 130 HOH HOH . M 4 HOH A 39 141 136 HOH HOH . M 4 HOH A 40 142 139 HOH HOH . M 4 HOH A 41 143 145 HOH HOH . M 4 HOH A 42 144 146 HOH HOH . M 4 HOH A 43 145 156 HOH HOH . M 4 HOH A 44 146 160 HOH HOH . M 4 HOH A 45 147 164 HOH HOH . M 4 HOH A 46 148 165 HOH HOH . M 4 HOH A 47 149 166 HOH HOH . M 4 HOH A 48 150 171 HOH HOH . M 4 HOH A 49 151 172 HOH HOH . M 4 HOH A 50 152 175 HOH HOH . N 4 HOH B 1 105 1 HOH HOH . N 4 HOH B 2 106 2 HOH HOH . N 4 HOH B 3 107 7 HOH HOH . N 4 HOH B 4 108 11 HOH HOH . N 4 HOH B 5 109 14 HOH HOH . N 4 HOH B 6 110 15 HOH HOH . N 4 HOH B 7 111 20 HOH HOH . N 4 HOH B 8 112 22 HOH HOH . N 4 HOH B 9 113 27 HOH HOH . N 4 HOH B 10 114 28 HOH HOH . N 4 HOH B 11 115 29 HOH HOH . N 4 HOH B 12 116 30 HOH HOH . N 4 HOH B 13 117 31 HOH HOH . N 4 HOH B 14 118 35 HOH HOH . N 4 HOH B 15 119 36 HOH HOH . N 4 HOH B 16 120 37 HOH HOH . N 4 HOH B 17 121 38 HOH HOH . N 4 HOH B 18 122 39 HOH HOH . N 4 HOH B 19 123 46 HOH HOH . N 4 HOH B 20 124 48 HOH HOH . N 4 HOH B 21 125 53 HOH HOH . N 4 HOH B 22 126 57 HOH HOH . N 4 HOH B 23 127 59 HOH HOH . N 4 HOH B 24 128 63 HOH HOH . N 4 HOH B 25 129 64 HOH HOH . N 4 HOH B 26 130 70 HOH HOH . N 4 HOH B 27 131 72 HOH HOH . N 4 HOH B 28 132 75 HOH HOH . N 4 HOH B 29 133 76 HOH HOH . N 4 HOH B 30 134 78 HOH HOH . N 4 HOH B 31 135 81 HOH HOH . N 4 HOH B 32 136 85 HOH HOH . N 4 HOH B 33 137 89 HOH HOH . N 4 HOH B 34 138 90 HOH HOH . N 4 HOH B 35 139 96 HOH HOH . N 4 HOH B 36 140 97 HOH HOH . N 4 HOH B 37 141 98 HOH HOH . N 4 HOH B 38 142 99 HOH HOH . N 4 HOH B 39 143 103 HOH HOH . N 4 HOH B 40 144 104 HOH HOH . N 4 HOH B 41 145 107 HOH HOH . N 4 HOH B 42 146 108 HOH HOH . N 4 HOH B 43 147 110 HOH HOH . N 4 HOH B 44 148 111 HOH HOH . N 4 HOH B 45 149 116 HOH HOH . N 4 HOH B 46 150 119 HOH HOH . N 4 HOH B 47 151 122 HOH HOH . N 4 HOH B 48 152 123 HOH HOH . N 4 HOH B 49 153 124 HOH HOH . N 4 HOH B 50 154 127 HOH HOH . N 4 HOH B 51 155 128 HOH HOH . N 4 HOH B 52 156 131 HOH HOH . N 4 HOH B 53 157 132 HOH HOH . N 4 HOH B 54 158 137 HOH HOH . N 4 HOH B 55 159 141 HOH HOH . N 4 HOH B 56 160 144 HOH HOH . N 4 HOH B 57 161 147 HOH HOH . N 4 HOH B 58 162 148 HOH HOH . N 4 HOH B 59 163 149 HOH HOH . N 4 HOH B 60 164 150 HOH HOH . N 4 HOH B 61 165 151 HOH HOH . N 4 HOH B 62 166 152 HOH HOH . N 4 HOH B 63 167 153 HOH HOH . N 4 HOH B 64 168 155 HOH HOH . N 4 HOH B 65 169 161 HOH HOH . N 4 HOH B 66 170 168 HOH HOH . N 4 HOH B 67 171 169 HOH HOH . O 4 HOH C 1 103 4 HOH HOH . O 4 HOH C 2 104 6 HOH HOH . O 4 HOH C 3 105 8 HOH HOH . O 4 HOH C 4 106 16 HOH HOH . O 4 HOH C 5 107 18 HOH HOH . O 4 HOH C 6 108 19 HOH HOH . O 4 HOH C 7 109 25 HOH HOH . O 4 HOH C 8 110 26 HOH HOH . O 4 HOH C 9 111 32 HOH HOH . O 4 HOH C 10 112 33 HOH HOH . O 4 HOH C 11 113 43 HOH HOH . O 4 HOH C 12 114 45 HOH HOH . O 4 HOH C 13 115 51 HOH HOH . O 4 HOH C 14 116 52 HOH HOH . O 4 HOH C 15 117 61 HOH HOH . O 4 HOH C 16 118 62 HOH HOH . O 4 HOH C 17 119 68 HOH HOH . O 4 HOH C 18 120 74 HOH HOH . O 4 HOH C 19 121 77 HOH HOH . O 4 HOH C 20 122 80 HOH HOH . O 4 HOH C 21 123 87 HOH HOH . O 4 HOH C 22 124 91 HOH HOH . O 4 HOH C 23 125 92 HOH HOH . O 4 HOH C 24 126 102 HOH HOH . O 4 HOH C 25 127 109 HOH HOH . O 4 HOH C 26 128 117 HOH HOH . O 4 HOH C 27 129 121 HOH HOH . O 4 HOH C 28 130 133 HOH HOH . O 4 HOH C 29 131 134 HOH HOH . O 4 HOH C 30 132 135 HOH HOH . O 4 HOH C 31 133 138 HOH HOH . O 4 HOH C 32 134 140 HOH HOH . O 4 HOH C 33 135 157 HOH HOH . O 4 HOH C 34 136 158 HOH HOH . O 4 HOH C 35 137 162 HOH HOH . O 4 HOH C 36 138 173 HOH HOH . O 4 HOH C 37 139 174 HOH HOH . O 4 HOH C 38 140 176 HOH HOH . P 4 HOH D 1 101 5 HOH HOH . P 4 HOH D 2 102 10 HOH HOH . P 4 HOH D 3 103 23 HOH HOH . P 4 HOH D 4 104 100 HOH HOH . P 4 HOH D 5 105 143 HOH HOH . P 4 HOH D 6 106 154 HOH HOH . P 4 HOH D 7 107 159 HOH HOH . P 4 HOH D 8 108 170 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x -40.036 _atom_site.Cartn_y 47.545 _atom_site.Cartn_z 19.415 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.03 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 102 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #