data_2R17 # _model_server_result.job_id zeedgjqhocaB5GHg-WcD9Q _model_server_result.datetime_utc '2024-12-26 11:12:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r17 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 2R17 # _exptl.entry_id 2R17 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2R17 _cell.length_a 66.25 _cell.length_b 128.471 _cell.length_c 140.452 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R17 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G,I 1 1 B,D,E,F,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 2 A MSE 1 1_555 A N LEU 3 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C ASP 96 A ASP 95 1_555 A N MSE 97 A MSE 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 97 A MSE 96 1_555 A N ALA 98 A ALA 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C LEU 153 A LEU 152 1_555 A N MSE 154 A MSE 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 154 A MSE 153 1_555 A N ASP 155 A ASP 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 B C MSE 1 B MSE 0 1_555 B N MSE 2 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C MSE 2 B MSE 1 1_555 B N LEU 3 B LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 B C ASP 96 B ASP 95 1_555 B N MSE 97 B MSE 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 B C MSE 97 B MSE 96 1_555 B N ALA 98 B ALA 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 B C LEU 153 B LEU 152 1_555 B N MSE 154 B MSE 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 B C MSE 154 B MSE 153 1_555 B N ASP 155 B ASP 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale13 C C PHE 124 C PHE 606 1_555 C N MSE 125 C MSE 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 C C MSE 125 C MSE 607 1_555 C N SER 126 C SER 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 C C ARG 155 C ARG 637 1_555 C N MSE 156 C MSE 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 C C MSE 156 C MSE 638 1_555 C N LYS 157 C LYS 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale17 C C VAL 214 C VAL 696 1_555 C N MSE 215 C MSE 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale18 C C MSE 215 C MSE 697 1_555 C N GLU 216 C GLU 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 C C CYS 228 C CYS 710 1_555 C N MSE 229 C MSE 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale20 C C MSE 229 C MSE 711 1_555 C N ASP 230 C ASP 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale21 D C PHE 124 D PHE 606 1_555 D N MSE 125 D MSE 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale22 D C MSE 125 D MSE 607 1_555 D N SER 126 D SER 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale23 D C ARG 155 D ARG 637 1_555 D N MSE 156 D MSE 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale24 D C MSE 156 D MSE 638 1_555 D N LYS 157 D LYS 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale25 D C VAL 214 D VAL 696 1_555 D N MSE 215 D MSE 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale26 D C MSE 215 D MSE 697 1_555 D N GLU 216 D GLU 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale27 D C CYS 228 D CYS 710 1_555 D N MSE 229 D MSE 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale28 D C MSE 229 D MSE 711 1_555 D N ASP 230 D ASP 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2R17 _atom_sites.fract_transf_matrix[1][1] 0.015094 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL D 1 1 1 GOL GOL . F 3 GOL D 1 2 2 GOL GOL . G 4 HOH A 1 183 2 HOH HOH . G 4 HOH A 2 184 12 HOH HOH . G 4 HOH A 3 185 13 HOH HOH . G 4 HOH A 4 186 14 HOH HOH . G 4 HOH A 5 187 15 HOH HOH . G 4 HOH A 6 188 16 HOH HOH . G 4 HOH A 7 189 41 HOH HOH . G 4 HOH A 8 190 42 HOH HOH . H 4 HOH B 1 183 3 HOH HOH . H 4 HOH B 2 184 4 HOH HOH . H 4 HOH B 3 185 5 HOH HOH . H 4 HOH B 4 186 17 HOH HOH . H 4 HOH B 5 187 18 HOH HOH . H 4 HOH B 6 188 19 HOH HOH . H 4 HOH B 7 189 20 HOH HOH . H 4 HOH B 8 190 21 HOH HOH . H 4 HOH B 9 191 22 HOH HOH . H 4 HOH B 10 192 23 HOH HOH . I 4 HOH C 1 781 1 HOH HOH . I 4 HOH C 2 782 6 HOH HOH . I 4 HOH C 3 783 7 HOH HOH . I 4 HOH C 4 784 8 HOH HOH . I 4 HOH C 5 785 9 HOH HOH . I 4 HOH C 6 786 25 HOH HOH . I 4 HOH C 7 787 26 HOH HOH . I 4 HOH C 8 788 27 HOH HOH . I 4 HOH C 9 789 28 HOH HOH . I 4 HOH C 10 790 29 HOH HOH . I 4 HOH C 11 791 30 HOH HOH . I 4 HOH C 12 792 31 HOH HOH . I 4 HOH C 13 793 32 HOH HOH . I 4 HOH C 14 794 43 HOH HOH . I 4 HOH C 15 795 44 HOH HOH . I 4 HOH C 16 796 47 HOH HOH . I 4 HOH C 17 797 50 HOH HOH . J 4 HOH D 1 781 10 HOH HOH . J 4 HOH D 2 782 11 HOH HOH . J 4 HOH D 3 783 33 HOH HOH . J 4 HOH D 4 784 34 HOH HOH . J 4 HOH D 5 785 35 HOH HOH . J 4 HOH D 6 786 36 HOH HOH . J 4 HOH D 7 787 37 HOH HOH . J 4 HOH D 8 788 38 HOH HOH . J 4 HOH D 9 789 39 HOH HOH . J 4 HOH D 10 790 40 HOH HOH . J 4 HOH D 11 791 45 HOH HOH . J 4 HOH D 12 792 46 HOH HOH . J 4 HOH D 13 793 48 HOH HOH . J 4 HOH D 14 794 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -9.634 58.63 64.154 1 79.76 ? C1 GOL 1 D 1 HETATM 2 O O1 GOL . . . E 3 -8.241 58.95 64.218 1 78.29 ? O1 GOL 1 D 1 HETATM 3 C C2 GOL . . . E 3 -9.971 58.006 62.792 1 80.1 ? C2 GOL 1 D 1 HETATM 4 O O2 GOL . . . E 3 -9.197 56.814 62.601 1 78.18 ? O2 GOL 1 D 1 HETATM 5 C C3 GOL . . . E 3 -11.468 57.673 62.74 1 80.33 ? C3 GOL 1 D 1 HETATM 6 O O3 GOL . . . E 3 -11.785 57.094 61.474 1 81.64 ? O3 GOL 1 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #