data_2R2E
#
_model_server_result.job_id            IrJ5D7462tI9py7jVogN7Q 
_model_server_result.datetime_utc      '2024-11-24 06:42:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2r2e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":214}' 
#
_entry.id    2R2E 
#
_exptl.entry_id    2R2E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              278.256 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'prop-2-en-1-yl 3-deoxy-beta-L-gulo-oct-2-ulopyranosidonic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2R2E 
_cell.length_a            43.11 
_cell.length_b            81.17 
_cell.length_c            132.36 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2R2E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 94 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 139 A CYS 133 1_555 A SG CYS 199 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 98 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 B SG CYS 149 B CYS 138 1_555 B SG CYS 204 B CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C11 H18 O8' 
_chem_comp.formula_weight    278.256 
_chem_comp.id                KDE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'prop-2-en-1-yl 3-deoxy-beta-L-gulo-oct-2-ulopyranosidonic acid' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'ALPHA-7-EPI-(3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID)-2-O-ALLYL;prop-2-en-1-yl 3-deoxy-beta-L-gulo-oct-2-ulosidonic acid;prop-2-en-1-yl 3-deoxy-L-gulo-oct-2-ulosidonic acid;prop-2-en-1-yl 3-deoxy-gulo-oct-2-ulosidonic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1A C1 KDE doub 173 n n 
C1 O1B KDE sing 174 n n 
C1 C2 KDE sing 175 n n 
C2 O2 KDE sing 176 n n 
C2 C3 KDE sing 177 n n 
C2 O6 KDE sing 178 n n 
O2 C9 KDE sing 179 n n 
C9 C10 KDE sing 180 n n 
C9 H9 KDE sing 181 n n 
C9 H9A KDE sing 182 n n 
C10 C11 KDE doub 183 n n 
C10 H10 KDE sing 184 n n 
C11 H11 KDE sing 185 n n 
C11 H11A KDE sing 186 n n 
C3 C4 KDE sing 187 n n 
C3 H3 KDE sing 188 n n 
C3 H3A KDE sing 189 n n 
C4 O4 KDE sing 190 n n 
C4 C5 KDE sing 191 n n 
C4 H4 KDE sing 192 n n 
O4 HO4 KDE sing 193 n n 
C5 O5 KDE sing 194 n n 
C5 C6 KDE sing 195 n n 
C5 H5 KDE sing 196 n n 
O5 HO5 KDE sing 197 n n 
C6 O6 KDE sing 198 n n 
C6 C7 KDE sing 199 n n 
C6 H6 KDE sing 200 n n 
C7 O7 KDE sing 201 n n 
C7 C8 KDE sing 202 n n 
C7 H7 KDE sing 203 n n 
O7 HO7 KDE sing 204 n n 
C8 O8 KDE sing 205 n n 
C8 H8 KDE sing 206 n n 
C8 H8A KDE sing 207 n n 
O8 HO8 KDE sing 208 n n 
O1B H18 KDE sing 209 n n 
#
_atom_sites.entry_id                     2R2E 
_atom_sites.fract_transf_matrix[1][1]    0.023196 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01232 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007555 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 KDE A 1 214 214 KDE KDE . 
D 4 HOH A 1 215 215 HOH HOH . 
D 4 HOH A 2 216 216 HOH HOH . 
D 4 HOH A 3 217 217 HOH HOH . 
D 4 HOH A 4 218 218 HOH HOH . 
D 4 HOH A 5 219 219 HOH HOH . 
D 4 HOH A 6 220 220 HOH HOH . 
D 4 HOH A 7 221 221 HOH HOH . 
D 4 HOH A 8 222 222 HOH HOH . 
D 4 HOH A 9 223 223 HOH HOH . 
D 4 HOH A 10 224 224 HOH HOH . 
D 4 HOH A 11 225 225 HOH HOH . 
D 4 HOH A 12 226 226 HOH HOH . 
D 4 HOH A 13 227 227 HOH HOH . 
D 4 HOH A 14 229 229 HOH HOH . 
D 4 HOH A 15 230 230 HOH HOH . 
D 4 HOH A 16 231 231 HOH HOH . 
D 4 HOH A 17 232 232 HOH HOH . 
D 4 HOH A 18 233 233 HOH HOH . 
D 4 HOH A 19 234 234 HOH HOH . 
D 4 HOH A 20 235 235 HOH HOH . 
D 4 HOH A 21 236 236 HOH HOH . 
D 4 HOH A 22 237 237 HOH HOH . 
D 4 HOH A 23 238 238 HOH HOH . 
D 4 HOH A 24 239 239 HOH HOH . 
D 4 HOH A 25 240 240 HOH HOH . 
D 4 HOH A 26 241 241 HOH HOH . 
D 4 HOH A 27 242 242 HOH HOH . 
D 4 HOH A 28 243 243 HOH HOH . 
D 4 HOH A 29 244 244 HOH HOH . 
D 4 HOH A 30 245 245 HOH HOH . 
D 4 HOH A 31 246 246 HOH HOH . 
D 4 HOH A 32 247 247 HOH HOH . 
D 4 HOH A 33 248 248 HOH HOH . 
D 4 HOH A 34 249 249 HOH HOH . 
D 4 HOH A 35 250 250 HOH HOH . 
D 4 HOH A 36 251 251 HOH HOH . 
D 4 HOH A 37 252 252 HOH HOH . 
D 4 HOH A 38 253 253 HOH HOH . 
D 4 HOH A 39 254 254 HOH HOH . 
D 4 HOH A 40 255 255 HOH HOH . 
D 4 HOH A 41 256 256 HOH HOH . 
D 4 HOH A 42 257 257 HOH HOH . 
D 4 HOH A 43 258 258 HOH HOH . 
E 4 HOH B 1 216 216 HOH HOH . 
E 4 HOH B 2 217 217 HOH HOH . 
E 4 HOH B 3 218 218 HOH HOH . 
E 4 HOH B 4 219 219 HOH HOH . 
E 4 HOH B 5 220 220 HOH HOH . 
E 4 HOH B 6 222 222 HOH HOH . 
E 4 HOH B 7 223 223 HOH HOH . 
E 4 HOH B 8 224 224 HOH HOH . 
E 4 HOH B 9 225 225 HOH HOH . 
E 4 HOH B 10 226 226 HOH HOH . 
E 4 HOH B 11 227 227 HOH HOH . 
E 4 HOH B 12 228 228 HOH HOH . 
E 4 HOH B 13 229 229 HOH HOH . 
E 4 HOH B 14 230 230 HOH HOH . 
E 4 HOH B 15 231 231 HOH HOH . 
E 4 HOH B 16 232 232 HOH HOH . 
E 4 HOH B 17 233 233 HOH HOH . 
E 4 HOH B 18 234 234 HOH HOH . 
E 4 HOH B 19 235 235 HOH HOH . 
E 4 HOH B 20 236 236 HOH HOH . 
E 4 HOH B 21 237 237 HOH HOH . 
E 4 HOH B 22 238 238 HOH HOH . 
E 4 HOH B 23 239 239 HOH HOH . 
E 4 HOH B 24 240 240 HOH HOH . 
E 4 HOH B 25 241 241 HOH HOH . 
E 4 HOH B 26 242 242 HOH HOH . 
E 4 HOH B 27 243 243 HOH HOH . 
E 4 HOH B 28 244 244 HOH HOH . 
E 4 HOH B 29 245 245 HOH HOH . 
E 4 HOH B 30 246 246 HOH HOH . 
E 4 HOH B 31 247 247 HOH HOH . 
E 4 HOH B 32 248 248 HOH HOH . 
E 4 HOH B 33 249 249 HOH HOH . 
E 4 HOH B 34 250 250 HOH HOH . 
E 4 HOH B 35 251 251 HOH HOH . 
E 4 HOH B 36 252 252 HOH HOH . 
E 4 HOH B 37 253 253 HOH HOH . 
E 4 HOH B 38 254 254 HOH HOH . 
E 4 HOH B 39 255 255 HOH HOH . 
E 4 HOH B 40 256 256 HOH HOH . 
E 4 HOH B 41 257 257 HOH HOH . 
E 4 HOH B 42 258 258 HOH HOH . 
E 4 HOH B 43 259 259 HOH HOH . 
E 4 HOH B 44 260 260 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1A KDE . . . C 3 5.891 0.811 -0.358 1 41.1 ? O1A KDE 214 A 1 
HETATM 2 C C1 KDE . . . C 3 4.856 0.17 -0.661 1 42.37 ? C1 KDE 214 A 1 
HETATM 3 O O1B KDE . . . C 3 4.782 -1.08 -0.806 1 44.88 ? O1B KDE 214 A 1 
HETATM 4 C C2 KDE . . . C 3 3.556 0.975 -0.84 1 41.63 ? C2 KDE 214 A 1 
HETATM 5 O O2 KDE . . . C 3 2.795 0.606 -2.029 1 44.81 ? O2 KDE 214 A 1 
HETATM 6 C C9 KDE . . . C 3 3.566 0.581 -3.289 1 46.38 ? C9 KDE 214 A 1 
HETATM 7 C C10 KDE . . . C 3 3.425 -0.81 -3.931 1 46.53 ? C10 KDE 214 A 1 
HETATM 8 C C11 KDE . . . C 3 3.033 -0.675 -5.399 1 47.36 ? C11 KDE 214 A 1 
HETATM 9 C C3 KDE . . . C 3 2.698 0.649 0.392 1 39.33 ? C3 KDE 214 A 1 
HETATM 10 C C4 KDE . . . C 3 1.618 1.714 0.62 1 38.79 ? C4 KDE 214 A 1 
HETATM 11 O O4 KDE . . . C 3 0.987 1.483 1.889 1 38.77 ? O4 KDE 214 A 1 
HETATM 12 C C5 KDE . . . C 3 2.153 3.158 0.537 1 38.6 ? C5 KDE 214 A 1 
HETATM 13 O O5 KDE . . . C 3 3.021 3.472 1.66 1 35.97 ? O5 KDE 214 A 1 
HETATM 14 C C6 KDE . . . C 3 2.857 3.375 -0.831 1 38.67 ? C6 KDE 214 A 1 
HETATM 15 O O6 KDE . . . C 3 3.916 2.372 -0.94 1 40.46 ? O6 KDE 214 A 1 
HETATM 16 C C7 KDE . . . C 3 3.541 4.737 -1.132 1 38.2 ? C7 KDE 214 A 1 
HETATM 17 O O7 KDE . . . C 3 4.198 4.673 -2.399 1 37.23 ? O7 KDE 214 A 1 
HETATM 18 C C8 KDE . . . C 3 2.615 5.96 -1.161 1 37.92 ? C8 KDE 214 A 1 
HETATM 19 O O8 KDE . . . C 3 1.291 5.542 -1.475 1 40.34 ? O8 KDE 214 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#