data_2R2I # _model_server_result.job_id JgEZaTzUd9nsBfeqSMJ8Hg _model_server_result.datetime_utc '2025-04-26 21:27:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r2i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 2R2I # _exptl.entry_id 2R2I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2R2I _cell.length_a 73.333 _cell.length_b 73.333 _cell.length_c 73.229 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R2I _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C1 MYR . A MYR 1 1_555 A N GLY 1 A GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A SG CYS 16 A CYS 17 1_555 F S2 BME . A BME 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale3 A SG CYS 27 A CYS 28 1_555 G S2 BME . A BME 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale4 A SG CYS 104 A CYS 105 1_555 H S2 BME . A BME 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale5 A SG CYS 123 A CYS 124 1_555 I S2 BME . A BME 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OD2 ASP 62 A ASP 63 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 A OD1 ASN 64 A ASN 65 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc3 A OD2 ASP 66 A ASP 67 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc4 A O TYR 68 A TYR 69 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc5 A OE1 GLU 73 A GLU 74 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc6 A OE2 GLU 73 A GLU 74 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc7 A OD1 ASP 98 A ASP 99 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc8 A OD1 ASP 100 A ASP 101 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc9 A OD1 ASN 102 A ASN 103 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc10 A O CYS 104 A CYS 105 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc11 A OE1 GLU 109 A GLU 110 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc12 A OE2 GLU 109 A GLU 110 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc13 A OD1 ASP 141 A ASP 142 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc14 A OD1 ASN 143 A ASN 144 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc15 A OD1 ASP 145 A ASP 146 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc16 A O GLU 147 A GLU 148 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc17 A OE1 GLU 152 A GLU 153 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc18 A OE2 GLU 152 A GLU 153 1_555 D CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc19 B CA CA . A CA 500 1_555 J O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc20 C CA CA . A CA 501 1_555 J O HOH . A HOH 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc21 D CA CA . A CA 502 1_555 J O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2R2I _atom_sites.fract_transf_matrix[1][1] 0.013636 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013656 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 500 500 CA CA . C 2 CA A 1 501 501 CA CA . D 2 CA A 1 502 502 CA CA . E 3 MYR A 1 1 1 MYR MYR . F 4 BME A 1 300 300 BME BME . G 4 BME A 1 301 301 BME BME . H 4 BME A 1 302 302 BME BME . I 4 BME A 1 303 303 BME BME . J 5 HOH A 1 503 1 HOH HOH . J 5 HOH A 2 504 2 HOH HOH . J 5 HOH A 3 505 3 HOH HOH . J 5 HOH A 4 506 4 HOH HOH . J 5 HOH A 5 507 5 HOH HOH . J 5 HOH A 6 508 6 HOH HOH . J 5 HOH A 7 509 7 HOH HOH . J 5 HOH A 8 510 8 HOH HOH . J 5 HOH A 9 511 9 HOH HOH . J 5 HOH A 10 512 10 HOH HOH . J 5 HOH A 11 513 11 HOH HOH . J 5 HOH A 12 514 12 HOH HOH . J 5 HOH A 13 515 13 HOH HOH . J 5 HOH A 14 516 14 HOH HOH . J 5 HOH A 15 517 15 HOH HOH . J 5 HOH A 16 518 16 HOH HOH . J 5 HOH A 17 519 17 HOH HOH . J 5 HOH A 18 520 18 HOH HOH . J 5 HOH A 19 521 19 HOH HOH . J 5 HOH A 20 522 20 HOH HOH . J 5 HOH A 21 523 21 HOH HOH . J 5 HOH A 22 524 22 HOH HOH . J 5 HOH A 23 525 23 HOH HOH . J 5 HOH A 24 526 24 HOH HOH . J 5 HOH A 25 527 25 HOH HOH . J 5 HOH A 26 528 26 HOH HOH . J 5 HOH A 27 529 27 HOH HOH . J 5 HOH A 28 530 28 HOH HOH . J 5 HOH A 29 531 29 HOH HOH . J 5 HOH A 30 532 30 HOH HOH . J 5 HOH A 31 533 31 HOH HOH . J 5 HOH A 32 534 32 HOH HOH . J 5 HOH A 33 535 33 HOH HOH . J 5 HOH A 34 536 34 HOH HOH . J 5 HOH A 35 537 35 HOH HOH . J 5 HOH A 36 538 36 HOH HOH . J 5 HOH A 37 539 37 HOH HOH . J 5 HOH A 38 540 38 HOH HOH . J 5 HOH A 39 541 39 HOH HOH . J 5 HOH A 40 542 40 HOH HOH . J 5 HOH A 41 543 41 HOH HOH . J 5 HOH A 42 544 42 HOH HOH . J 5 HOH A 43 545 43 HOH HOH . J 5 HOH A 44 546 44 HOH HOH . J 5 HOH A 45 547 45 HOH HOH . J 5 HOH A 46 548 46 HOH HOH . J 5 HOH A 47 549 47 HOH HOH . J 5 HOH A 48 550 48 HOH HOH . J 5 HOH A 49 551 49 HOH HOH . J 5 HOH A 50 552 50 HOH HOH . J 5 HOH A 51 553 51 HOH HOH . J 5 HOH A 52 554 52 HOH HOH . J 5 HOH A 53 555 53 HOH HOH . J 5 HOH A 54 556 54 HOH HOH . J 5 HOH A 55 557 55 HOH HOH . J 5 HOH A 56 558 56 HOH HOH . J 5 HOH A 57 559 57 HOH HOH . J 5 HOH A 58 560 58 HOH HOH . J 5 HOH A 59 561 59 HOH HOH . J 5 HOH A 60 562 60 HOH HOH . J 5 HOH A 61 563 61 HOH HOH . J 5 HOH A 62 564 62 HOH HOH . J 5 HOH A 63 565 63 HOH HOH . J 5 HOH A 64 566 64 HOH HOH . J 5 HOH A 65 567 65 HOH HOH . J 5 HOH A 66 568 66 HOH HOH . J 5 HOH A 67 569 67 HOH HOH . J 5 HOH A 68 570 68 HOH HOH . J 5 HOH A 69 571 69 HOH HOH . J 5 HOH A 70 572 70 HOH HOH . J 5 HOH A 71 573 71 HOH HOH . J 5 HOH A 72 574 72 HOH HOH . J 5 HOH A 73 575 73 HOH HOH . J 5 HOH A 74 576 74 HOH HOH . J 5 HOH A 75 577 75 HOH HOH . J 5 HOH A 76 578 76 HOH HOH . J 5 HOH A 77 579 77 HOH HOH . J 5 HOH A 78 580 78 HOH HOH . J 5 HOH A 79 581 79 HOH HOH . J 5 HOH A 80 582 80 HOH HOH . J 5 HOH A 81 583 81 HOH HOH . J 5 HOH A 82 584 82 HOH HOH . J 5 HOH A 83 585 83 HOH HOH . J 5 HOH A 84 586 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . E 3 2.202 51.723 45.992 1 36.95 ? C1 MYR 1 A 1 HETATM 2 O O1 MYR . . . E 3 2.382 51.329 47.023 1 37.78 ? O1 MYR 1 A 1 HETATM 3 C C2 MYR . . . E 3 2.145 50.843 44.726 1 37.55 ? C2 MYR 1 A 1 HETATM 4 C C3 MYR . . . E 3 2.388 49.36 45.064 1 37.38 ? C3 MYR 1 A 1 HETATM 5 C C4 MYR . . . E 3 2.656 48.567 43.773 1 36.86 ? C4 MYR 1 A 1 HETATM 6 C C5 MYR . . . E 3 4.067 48.868 43.235 1 38.66 ? C5 MYR 1 A 1 HETATM 7 C C6 MYR . . . E 3 3.986 48.976 41.712 1 38.6 ? C6 MYR 1 A 1 HETATM 8 C C7 MYR . . . E 3 5.348 49.332 41.111 1 39.46 ? C7 MYR 1 A 1 HETATM 9 C C8 MYR . . . E 3 5.535 48.481 39.851 1 40.61 ? C8 MYR 1 A 1 HETATM 10 C C9 MYR . . . E 3 6.884 48.797 39.182 1 40.52 ? C9 MYR 1 A 1 HETATM 11 C C10 MYR . . . E 3 7.672 47.506 38.843 1 38.66 ? C10 MYR 1 A 1 HETATM 12 C C11 MYR . . . E 3 6.802 46.459 38.119 1 38.66 ? C11 MYR 1 A 1 HETATM 13 C C12 MYR . . . E 3 6.862 46.666 36.606 1 36.84 ? C12 MYR 1 A 1 HETATM 14 C C13 MYR . . . E 3 6.097 45.533 35.925 1 35.18 ? C13 MYR 1 A 1 HETATM 15 C C14 MYR . . . E 3 6.147 45.735 34.411 1 36.27 ? C14 MYR 1 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #