data_2R38 # _model_server_result.job_id NOlZekRJeF1kobI30hlVkQ _model_server_result.datetime_utc '2024-11-07 04:35:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2501}' # _entry.id 2R38 # _exptl.entry_id 2R38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 647.764 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-{(3S,4S)-PYRROLIDINE-3,4-DIYLBIS[(BENZYLIMINO)SULFONYL]}DIBENZAMIDE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2R38 _cell.length_a 57.385 _cell.length_b 85.711 _cell.length_c 46.556 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H33 N5 O6 S2' _chem_comp.formula_weight 647.764 _chem_comp.id G4G _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-{(3S,4S)-PYRROLIDINE-3,4-DIYLBIS[(BENZYLIMINO)SULFONYL]}DIBENZAMIDE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C4 G4G doub 83 n y C1 C17 G4G sing 84 n y C1 H1 G4G sing 85 n n O2 C8 G4G doub 86 n n N2 C9 G4G sing 87 n n N2 HN21 G4G sing 88 n n N2 HN2A G4G sing 89 n n C2 C18 G4G doub 90 n y C2 C6 G4G sing 91 n y C2 H2 G4G sing 92 n n O1 C9 G4G doub 93 n n N1 C8 G4G sing 94 n n N1 HN11 G4G sing 95 n n N1 HN12 G4G sing 96 n n C3 C19 G4G doub 97 n y C3 C4 G4G sing 98 n y C3 H3 G4G sing 99 n n C4 C9 G4G sing 100 n n C5 C6 G4G doub 101 n y C5 C20 G4G sing 102 n y C5 H5 G4G sing 103 n n C6 C8 G4G sing 104 n n C7 N28 G4G sing 105 n n C7 C12 G4G sing 106 n n C7 H71 G4G sing 107 n n C7 H72 G4G sing 108 n n S8 N28 G4G sing 109 n n S8 O10 G4G doub 110 n n S8 C26 G4G sing 111 n n S8 O41 G4G doub 112 n n S9 O40 G4G doub 113 n n S9 C27 G4G sing 114 n n S9 N32 G4G sing 115 n n S9 O11 G4G doub 116 n n C12 C14 G4G sing 117 n y C12 C13 G4G doub 118 n y C13 C29 G4G sing 119 n y C13 H13 G4G sing 120 n n C14 C30 G4G doub 121 n y C14 H14 G4G sing 122 n n C17 C26 G4G doub 123 n y C17 H17 G4G sing 124 n n C18 C27 G4G sing 125 n y C18 H18 G4G sing 126 n n C19 C26 G4G sing 127 n y C19 H19 G4G sing 128 n n C20 C27 G4G doub 129 n y C20 H20 G4G sing 130 n n C21 N22 G4G sing 131 n n C21 C23 G4G sing 132 n n C21 H211 G4G sing 133 n n C21 H212 G4G sing 134 n n N22 C25 G4G sing 135 n n N22 HN22 G4G sing 136 n n C23 C24 G4G sing 137 n n C23 N28 G4G sing 138 n n C23 H23 G4G sing 139 n n C24 N32 G4G sing 140 n n C24 C25 G4G sing 141 n n C24 H24 G4G sing 142 n n C25 H251 G4G sing 143 n n C25 H252 G4G sing 144 n n C29 C31 G4G doub 145 n y C29 H29 G4G sing 146 n n C30 C31 G4G sing 147 n y C30 H30 G4G sing 148 n n C31 H31 G4G sing 149 n n N32 C33 G4G sing 150 n n C33 C34 G4G sing 151 n n C33 H331 G4G sing 152 n n C33 H332 G4G sing 153 n n C34 C38 G4G sing 154 n y C34 C35 G4G doub 155 n y C35 C36 G4G sing 156 n y C35 H35 G4G sing 157 n n C36 C37 G4G doub 158 n y C36 H36 G4G sing 159 n n C37 C39 G4G sing 160 n y C37 H37 G4G sing 161 n n C38 C39 G4G doub 162 n y C38 H38 G4G sing 163 n n C39 H39 G4G sing 164 n n # _atom_sites.entry_id 2R38 _atom_sites.fract_transf_matrix[1][1] 0.017426 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011667 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02148 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL B 1 2601 2601 CL CL . D 2 CL B 1 2602 2602 CL CL . E 3 G4G B 1 2501 2501 G4G LIG . F 4 HOH A 1 3003 3003 HOH HOH . F 4 HOH A 2 3005 3005 HOH HOH . F 4 HOH A 3 3007 3007 HOH HOH . F 4 HOH A 4 3009 3009 HOH HOH . F 4 HOH A 5 3010 3010 HOH HOH . F 4 HOH A 6 3015 3015 HOH HOH . F 4 HOH A 7 3020 3020 HOH HOH . F 4 HOH A 8 3023 3023 HOH HOH . F 4 HOH A 9 3024 3024 HOH HOH . F 4 HOH A 10 3027 3027 HOH HOH . F 4 HOH A 11 3028 3028 HOH HOH . F 4 HOH A 12 3029 3029 HOH HOH . F 4 HOH A 13 3035 3035 HOH HOH . F 4 HOH A 14 3036 3036 HOH HOH . F 4 HOH A 15 3038 3038 HOH HOH . F 4 HOH A 16 3039 3039 HOH HOH . F 4 HOH A 17 3042 3042 HOH HOH . F 4 HOH A 18 3047 3047 HOH HOH . F 4 HOH A 19 3049 3049 HOH HOH . F 4 HOH A 20 3053 3053 HOH HOH . F 4 HOH A 21 3054 3054 HOH HOH . F 4 HOH A 22 3059 3059 HOH HOH . F 4 HOH A 23 3060 3060 HOH HOH . F 4 HOH A 24 3061 3061 HOH HOH . F 4 HOH A 25 3062 3062 HOH HOH . F 4 HOH A 26 3064 3064 HOH HOH . F 4 HOH A 27 3065 3065 HOH HOH . F 4 HOH A 28 3067 3067 HOH HOH . F 4 HOH A 29 3068 3068 HOH HOH . F 4 HOH A 30 3069 3069 HOH HOH . F 4 HOH A 31 3071 3071 HOH HOH . F 4 HOH A 32 3074 3074 HOH HOH . F 4 HOH A 33 3076 3076 HOH HOH . F 4 HOH A 34 3078 3078 HOH HOH . F 4 HOH A 35 3082 3082 HOH HOH . F 4 HOH A 36 3083 3083 HOH HOH . F 4 HOH A 37 3084 3084 HOH HOH . F 4 HOH A 38 3086 3086 HOH HOH . F 4 HOH A 39 3087 3087 HOH HOH . F 4 HOH A 40 3090 3090 HOH HOH . F 4 HOH A 41 3092 3092 HOH HOH . F 4 HOH A 42 3093 3093 HOH HOH . F 4 HOH A 43 3094 3094 HOH HOH . F 4 HOH A 44 3099 3099 HOH HOH . F 4 HOH A 45 3104 3104 HOH HOH . F 4 HOH A 46 3107 3107 HOH HOH . F 4 HOH A 47 3114 3114 HOH HOH . G 4 HOH B 1 3001 3001 HOH HOH . G 4 HOH B 2 3002 3002 HOH HOH . G 4 HOH B 3 3004 3004 HOH HOH . G 4 HOH B 4 3006 3006 HOH HOH . G 4 HOH B 5 3008 3008 HOH HOH . G 4 HOH B 6 3011 3011 HOH HOH . G 4 HOH B 7 3012 3012 HOH HOH . G 4 HOH B 8 3013 3013 HOH HOH . G 4 HOH B 9 3014 3014 HOH HOH . G 4 HOH B 10 3016 3016 HOH HOH . G 4 HOH B 11 3017 3017 HOH HOH . G 4 HOH B 12 3018 3018 HOH HOH . G 4 HOH B 13 3019 3019 HOH HOH . G 4 HOH B 14 3021 3021 HOH HOH . G 4 HOH B 15 3022 3022 HOH HOH . G 4 HOH B 16 3025 3025 HOH HOH . G 4 HOH B 17 3026 3026 HOH HOH . G 4 HOH B 18 3030 3030 HOH HOH . G 4 HOH B 19 3031 3031 HOH HOH . G 4 HOH B 20 3032 3032 HOH HOH . G 4 HOH B 21 3033 3033 HOH HOH . G 4 HOH B 22 3034 3034 HOH HOH . G 4 HOH B 23 3037 3037 HOH HOH . G 4 HOH B 24 3040 3040 HOH HOH . G 4 HOH B 25 3041 3041 HOH HOH . G 4 HOH B 26 3043 3043 HOH HOH . G 4 HOH B 27 3044 3044 HOH HOH . G 4 HOH B 28 3045 3045 HOH HOH . G 4 HOH B 29 3046 3046 HOH HOH . G 4 HOH B 30 3048 3048 HOH HOH . G 4 HOH B 31 3050 3050 HOH HOH . G 4 HOH B 32 3051 3051 HOH HOH . G 4 HOH B 33 3052 3052 HOH HOH . G 4 HOH B 34 3055 3055 HOH HOH . G 4 HOH B 35 3056 3056 HOH HOH . G 4 HOH B 36 3057 3057 HOH HOH . G 4 HOH B 37 3058 3058 HOH HOH . G 4 HOH B 38 3063 3063 HOH HOH . G 4 HOH B 39 3066 3066 HOH HOH . G 4 HOH B 40 3070 3070 HOH HOH . G 4 HOH B 41 3072 3072 HOH HOH . G 4 HOH B 42 3073 3073 HOH HOH . G 4 HOH B 43 3075 3075 HOH HOH . G 4 HOH B 44 3077 3077 HOH HOH . G 4 HOH B 45 3079 3079 HOH HOH . G 4 HOH B 46 3080 3080 HOH HOH . G 4 HOH B 47 3081 3081 HOH HOH . G 4 HOH B 48 3085 3085 HOH HOH . G 4 HOH B 49 3088 3088 HOH HOH . G 4 HOH B 50 3089 3089 HOH HOH . G 4 HOH B 51 3091 3091 HOH HOH . G 4 HOH B 52 3095 3095 HOH HOH . G 4 HOH B 53 3096 3096 HOH HOH . G 4 HOH B 54 3097 3097 HOH HOH . G 4 HOH B 55 3098 3098 HOH HOH . G 4 HOH B 56 3100 3100 HOH HOH . G 4 HOH B 57 3101 3101 HOH HOH . G 4 HOH B 58 3102 3102 HOH HOH . G 4 HOH B 59 3103 3103 HOH HOH . G 4 HOH B 60 3105 3105 HOH HOH . G 4 HOH B 61 3106 3106 HOH HOH . G 4 HOH B 62 3108 3108 HOH HOH . G 4 HOH B 63 3109 3109 HOH HOH . G 4 HOH B 64 3110 3110 HOH HOH . G 4 HOH B 65 3111 3111 HOH HOH . G 4 HOH B 66 3112 3112 HOH HOH . G 4 HOH B 67 3113 3113 HOH HOH . G 4 HOH B 68 3115 3115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G4G . . . E 3 9.091 -15.638 -14.47 1 27.67 ? C1 G4G 2501 B 1 HETATM 2 O O2 G4G . . . E 3 17.088 -24.464 -22.015 1 24.25 ? O2 G4G 2501 B 1 HETATM 3 N N2 G4G . . . E 3 5.591 -14.937 -15.375 1 25.99 ? N2 G4G 2501 B 1 HETATM 4 C C2 G4G . . . E 3 14.49 -23.745 -21.258 1 18.26 ? C2 G4G 2501 B 1 HETATM 5 O O1 G4G . . . E 3 7.304 -13.591 -14.885 1 28.1 ? O1 G4G 2501 B 1 HETATM 6 N N1 G4G . . . E 3 17.482 -25.623 -20.146 1 20.21 ? N1 G4G 2501 B 1 HETATM 7 C C3 G4G . . . E 3 7.523 -17.075 -15.759 1 16.86 ? C3 G4G 2501 B 1 HETATM 8 C C4 G4G . . . E 3 7.834 -15.833 -15.147 1 26.19 ? C4 G4G 2501 B 1 HETATM 9 C C5 G4G . . . E 3 15.183 -24.272 -18.959 1 18.01 ? C5 G4G 2501 B 1 HETATM 10 C C6 G4G . . . E 3 15.429 -24.264 -20.352 1 18.52 ? C6 G4G 2501 B 1 HETATM 11 C C7 G4G . . . E 3 13.465 -18.713 -15.248 1 15.1 ? C7 G4G 2501 B 1 HETATM 12 C C8 G4G . . . E 3 16.733 -24.799 -20.898 1 25.9 ? C8 G4G 2501 B 1 HETATM 13 S S8 G4G . . . E 3 10.84 -19.314 -14.999 1 23.89 ? S8 G4G 2501 B 1 HETATM 14 C C9 G4G . . . E 3 6.888 -14.708 -15.135 1 27.44 ? C9 G4G 2501 B 1 HETATM 15 S S9 G4G . . . E 3 11.455 -22.544 -18.773 1 20.95 ? S9 G4G 2501 B 1 HETATM 16 O O10 G4G . . . E 3 10.244 -20.508 -15.581 1 22.96 ? O10 G4G 2501 B 1 HETATM 17 O O11 G4G . . . E 3 11.453 -22.795 -17.349 1 18.85 ? O11 G4G 2501 B 1 HETATM 18 C C12 G4G . . . E 3 14.337 -19.97 -15.196 1 15.07 ? C12 G4G 2501 B 1 HETATM 19 C C13 G4G . . . E 3 13.775 -21.236 -14.829 1 21.77 ? C13 G4G 2501 B 1 HETATM 20 C C14 G4G . . . E 3 15.729 -19.898 -15.527 1 16.48 ? C14 G4G 2501 B 1 HETATM 21 C C17 G4G . . . E 3 10.024 -16.716 -14.442 1 23.13 ? C17 G4G 2501 B 1 HETATM 22 C C18 G4G . . . E 3 13.256 -23.227 -20.8 1 16.3 ? C18 G4G 2501 B 1 HETATM 23 C C19 G4G . . . E 3 8.459 -18.15 -15.696 1 17.66 ? C19 G4G 2501 B 1 HETATM 24 C C20 G4G . . . E 3 13.941 -23.745 -18.502 1 19.19 ? C20 G4G 2501 B 1 HETATM 25 C C21 G4G . . . E 3 12.548 -17.744 -18.134 1 13.48 ? C21 G4G 2501 B 1 HETATM 26 N N22 G4G . . . E 3 13.908 -18.187 -18.563 1 13.47 ? N22 G4G 2501 B 1 HETATM 27 C C23 G4G . . . E 3 11.917 -18.964 -17.431 1 18.37 ? C23 G4G 2501 B 1 HETATM 28 C C24 G4G . . . E 3 12.671 -20.221 -18.033 1 21.28 ? C24 G4G 2501 B 1 HETATM 29 C C25 G4G . . . E 3 13.984 -19.656 -18.638 1 14.04 ? C25 G4G 2501 B 1 HETATM 30 C C26 G4G . . . E 3 9.72 -17.972 -15.036 1 23.95 ? C26 G4G 2501 B 1 HETATM 31 C C27 G4G . . . E 3 12.993 -23.21 -19.405 1 15.98 ? C27 G4G 2501 B 1 HETATM 32 N N28 G4G . . . E 3 12.19 -18.95 -15.949 1 23.83 ? N28 G4G 2501 B 1 HETATM 33 C C29 G4G . . . E 3 14.628 -22.383 -14.801 1 27.14 ? C29 G4G 2501 B 1 HETATM 34 C C30 G4G . . . E 3 16.583 -21.04 -15.464 1 22.68 ? C30 G4G 2501 B 1 HETATM 35 C C31 G4G . . . E 3 16.02 -22.298 -15.098 1 27.82 ? C31 G4G 2501 B 1 HETATM 36 N N32 G4G . . . E 3 11.807 -20.89 -19.073 1 21.41 ? N32 G4G 2501 B 1 HETATM 37 C C33 G4G . . . E 3 11.278 -20.279 -20.323 1 16.09 ? C33 G4G 2501 B 1 HETATM 38 C C34 G4G . . . E 3 9.994 -19.476 -20.159 1 17.33 ? C34 G4G 2501 B 1 HETATM 39 C C35 G4G . . . E 3 9.051 -19.862 -19.185 1 16.27 ? C35 G4G 2501 B 1 HETATM 40 C C36 G4G . . . E 3 7.868 -19.078 -19.08 1 21.24 ? C36 G4G 2501 B 1 HETATM 41 C C37 G4G . . . E 3 7.665 -17.945 -19.923 1 21.6 ? C37 G4G 2501 B 1 HETATM 42 C C38 G4G . . . E 3 9.785 -18.362 -21.018 1 17.5 ? C38 G4G 2501 B 1 HETATM 43 C C39 G4G . . . E 3 8.619 -17.562 -20.902 1 20.08 ? C39 G4G 2501 B 1 HETATM 44 O O40 G4G . . . E 3 10.479 -22.979 -19.757 1 23.47 ? O40 G4G 2501 B 1 HETATM 45 O O41 G4G . . . E 3 11.296 -19.434 -13.589 1 27.52 ? O41 G4G 2501 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 45 #