data_2R40 # _model_server_result.job_id NkPc1EvXtLl7d8FlPpXOlw _model_server_result.datetime_utc '2024-10-19 12:40:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r40 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":600}' # _entry.id 2R40 # _exptl.entry_id 2R40 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 709.933 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2R40 _cell.length_a 58.001 _cell.length_b 58.001 _cell.length_c 303.592 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R40 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -101.197333 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C39 H68 N O8 P' _chem_comp.formula_weight 709.933 _chem_comp.id EPH _chem_comp.mon_nstd_flag . _chem_comp.name L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 EPH sing 164 n n C1 O2 EPH sing 165 n n C1 H11 EPH sing 166 n n C1 H12A EPH sing 167 n n C2 C37 EPH sing 168 n n C2 O1 EPH sing 169 n n C2 H2 EPH sing 170 n n C4 O2 EPH sing 171 n n C4 O4 EPH doub 172 n n C4 C18 EPH sing 173 n n C18 C19 EPH sing 174 n n C18 H181 EPH sing 175 n n C18 H182 EPH sing 176 n n C19 C20 EPH sing 177 n n C19 H191 EPH sing 178 n n C19 H192 EPH sing 179 n n C20 C21 EPH sing 180 n n C20 H201 EPH sing 181 n n C20 H202 EPH sing 182 n n C21 C22 EPH sing 183 n n C21 H211 EPH sing 184 n n C21 H212 EPH sing 185 n n C22 C23 EPH sing 186 n n C22 H221 EPH sing 187 n n C22 H222 EPH sing 188 n n C23 C24 EPH sing 189 n n C23 H231 EPH sing 190 n n C23 H232 EPH sing 191 n n C24 C25 EPH doub 192 e n C24 H24 EPH sing 193 n n C25 C26 EPH sing 194 n n C25 H25 EPH sing 195 n n C26 C27 EPH sing 196 n n C26 H261 EPH sing 197 n n C26 H262 EPH sing 198 n n C27 C28 EPH sing 199 n n C27 H271 EPH sing 200 n n C27 H272 EPH sing 201 n n C28 C29 EPH doub 202 e n C28 H28 EPH sing 203 n n C29 C30 EPH sing 204 n n C29 H29 EPH sing 205 n n C30 C31 EPH sing 206 n n C30 H301 EPH sing 207 n n C30 H302 EPH sing 208 n n C31 C32 EPH sing 209 n n C31 H311 EPH sing 210 n n C31 H312 EPH sing 211 n n C32 C33 EPH doub 212 e n C32 H32 EPH sing 213 n n C33 C34 EPH sing 214 n n C33 H33 EPH sing 215 n n C34 H341 EPH sing 216 n n C34 H342 EPH sing 217 n n C34 H343 EPH sing 218 n n C37 O5 EPH sing 219 n n C37 H371 EPH sing 220 n n C37 H372 EPH sing 221 n n O5 P1 EPH sing 222 n n C3 O1 EPH sing 223 n n C3 O3 EPH doub 224 n n C3 C5 EPH sing 225 n n C5 C6 EPH sing 226 n n C5 H51 EPH sing 227 n n C5 H52 EPH sing 228 n n C6 C7 EPH sing 229 n n C6 H61 EPH sing 230 n n C6 H62 EPH sing 231 n n C7 C8 EPH sing 232 n n C7 H71 EPH sing 233 n n C7 H72 EPH sing 234 n n C8 C9 EPH sing 235 n n C8 H81 EPH sing 236 n n C8 H82 EPH sing 237 n n C9 C10 EPH sing 238 n n C9 H91 EPH sing 239 n n C9 H92 EPH sing 240 n n C10 C11 EPH sing 241 n n C10 H101 EPH sing 242 n n C10 H102 EPH sing 243 n n C11 C12 EPH sing 244 n n C11 H111 EPH sing 245 n n C11 H112 EPH sing 246 n n C12 C13 EPH doub 247 e n C12 H12 EPH sing 248 n n C13 C14 EPH sing 249 n n C13 H13 EPH sing 250 n n C14 C15 EPH sing 251 n n C14 H141 EPH sing 252 n n C14 H142 EPH sing 253 n n C15 C16 EPH doub 254 e n C15 H15 EPH sing 255 n n C16 C17 EPH sing 256 n n C16 H16 EPH sing 257 n n C17 C35 EPH sing 258 n n C17 H171 EPH sing 259 n n C17 H172 EPH sing 260 n n C35 C36 EPH sing 261 n n C35 H351 EPH sing 262 n n C35 H352 EPH sing 263 n n C36 H361 EPH sing 264 n n C36 H362 EPH sing 265 n n C36 H363 EPH sing 266 n n P1 O6 EPH sing 267 n n P1 O7 EPH doub 268 n n P1 O8 EPH sing 269 n n O6 HO6 EPH sing 270 n n O8 C38 EPH sing 271 n n C38 C39 EPH sing 272 n n C38 H381 EPH sing 273 n n C38 H382 EPH sing 274 n n C39 N1 EPH sing 275 n n C39 H391 EPH sing 276 n n C39 H392 EPH sing 277 n n N1 HN11 EPH sing 278 n n N1 HN12 EPH sing 279 n n # _atom_sites.entry_id 2R40 _atom_sites.fract_transf_matrix[1][1] 0.017241 _atom_sites.fract_transf_matrix[1][2] 0.009954 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FLC D 1 9400 9400 FLC FLC . D 4 SO4 D 1 1327 1327 SO4 SO4 . E 5 20E D 1 9001 9001 20E 20E . F 6 GOL D 1 9500 9500 GOL GOL . G 7 EPH A 1 600 600 EPH EPH . H 8 HOH D 1 9501 3 HOH HOH . H 8 HOH D 2 9502 6 HOH HOH . H 8 HOH D 3 9503 8 HOH HOH . H 8 HOH D 4 9504 9 HOH HOH . H 8 HOH D 5 9505 10 HOH HOH . H 8 HOH D 6 9506 11 HOH HOH . H 8 HOH D 7 9507 12 HOH HOH . H 8 HOH D 8 9508 14 HOH HOH . H 8 HOH D 9 9509 15 HOH HOH . H 8 HOH D 10 9510 16 HOH HOH . H 8 HOH D 11 9511 17 HOH HOH . H 8 HOH D 12 9512 18 HOH HOH . H 8 HOH D 13 9513 19 HOH HOH . H 8 HOH D 14 9514 20 HOH HOH . H 8 HOH D 15 9515 22 HOH HOH . H 8 HOH D 16 9516 23 HOH HOH . H 8 HOH D 17 9517 24 HOH HOH . H 8 HOH D 18 9518 25 HOH HOH . H 8 HOH D 19 9519 26 HOH HOH . H 8 HOH D 20 9520 27 HOH HOH . H 8 HOH D 21 9521 28 HOH HOH . H 8 HOH D 22 9522 29 HOH HOH . H 8 HOH D 23 9523 30 HOH HOH . H 8 HOH D 24 9524 31 HOH HOH . H 8 HOH D 25 9525 33 HOH HOH . H 8 HOH D 26 9526 38 HOH HOH . H 8 HOH D 27 9527 39 HOH HOH . H 8 HOH D 28 9528 40 HOH HOH . H 8 HOH D 29 9529 41 HOH HOH . H 8 HOH D 30 9530 42 HOH HOH . H 8 HOH D 31 9531 43 HOH HOH . H 8 HOH D 32 9532 45 HOH HOH . H 8 HOH D 33 9533 46 HOH HOH . H 8 HOH D 34 9534 62 HOH HOH . H 8 HOH D 35 9535 63 HOH HOH . H 8 HOH D 36 9536 65 HOH HOH . H 8 HOH D 37 9537 66 HOH HOH . H 8 HOH D 38 9538 78 HOH HOH . H 8 HOH D 39 9539 79 HOH HOH . H 8 HOH D 40 9540 80 HOH HOH . H 8 HOH D 41 9541 81 HOH HOH . H 8 HOH D 42 9542 83 HOH HOH . H 8 HOH D 43 9543 84 HOH HOH . H 8 HOH D 44 9544 85 HOH HOH . H 8 HOH D 45 9545 86 HOH HOH . H 8 HOH D 46 9546 87 HOH HOH . I 8 HOH A 1 601 1 HOH HOH . I 8 HOH A 2 602 2 HOH HOH . I 8 HOH A 3 603 4 HOH HOH . I 8 HOH A 4 604 5 HOH HOH . I 8 HOH A 5 605 7 HOH HOH . I 8 HOH A 6 606 13 HOH HOH . I 8 HOH A 7 607 21 HOH HOH . I 8 HOH A 8 608 32 HOH HOH . I 8 HOH A 9 609 36 HOH HOH . I 8 HOH A 10 610 37 HOH HOH . I 8 HOH A 11 611 44 HOH HOH . I 8 HOH A 12 612 47 HOH HOH . I 8 HOH A 13 613 48 HOH HOH . I 8 HOH A 14 614 49 HOH HOH . I 8 HOH A 15 615 50 HOH HOH . I 8 HOH A 16 616 51 HOH HOH . I 8 HOH A 17 617 52 HOH HOH . I 8 HOH A 18 618 53 HOH HOH . I 8 HOH A 19 619 54 HOH HOH . I 8 HOH A 20 620 55 HOH HOH . I 8 HOH A 21 621 56 HOH HOH . I 8 HOH A 22 622 57 HOH HOH . I 8 HOH A 23 623 58 HOH HOH . I 8 HOH A 24 624 59 HOH HOH . I 8 HOH A 25 625 60 HOH HOH . I 8 HOH A 26 626 61 HOH HOH . I 8 HOH A 27 627 64 HOH HOH . I 8 HOH A 28 628 67 HOH HOH . I 8 HOH A 29 629 68 HOH HOH . I 8 HOH A 30 630 69 HOH HOH . I 8 HOH A 31 631 70 HOH HOH . I 8 HOH A 32 632 71 HOH HOH . I 8 HOH A 33 633 72 HOH HOH . I 8 HOH A 34 634 73 HOH HOH . I 8 HOH A 35 635 74 HOH HOH . I 8 HOH A 36 636 75 HOH HOH . I 8 HOH A 37 637 76 HOH HOH . I 8 HOH A 38 638 77 HOH HOH . I 8 HOH A 39 639 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EPH . . . G 7 25.359 10.584 -41.616 1 68.2 ? C1 EPH 600 A 1 HETATM 2 C C2 EPH . . . G 7 24.309 11.135 -40.675 1 70.42 ? C2 EPH 600 A 1 HETATM 3 C C4 EPH . . . G 7 25.236 9.15 -43.5 1 65.8 ? C4 EPH 600 A 1 HETATM 4 O O2 EPH . . . G 7 24.593 10.031 -42.689 1 66.83 ? O2 EPH 600 A 1 HETATM 5 O O4 EPH . . . G 7 26.445 9.26 -43.724 1 65.48 ? O4 EPH 600 A 1 HETATM 6 C C18 EPH . . . G 7 24.404 8.024 -44.132 1 64.89 ? C18 EPH 600 A 1 HETATM 7 C C19 EPH . . . G 7 25.078 6.648 -43.985 1 64.23 ? C19 EPH 600 A 1 HETATM 8 C C20 EPH . . . G 7 25.054 6.15 -42.541 1 63.27 ? C20 EPH 600 A 1 HETATM 9 C C21 EPH . . . G 7 26.03 4.987 -42.35 1 63.95 ? C21 EPH 600 A 1 HETATM 10 C C22 EPH . . . G 7 25.804 4.272 -41.009 1 64.39 ? C22 EPH 600 A 1 HETATM 11 C C23 EPH . . . G 7 24.888 3.041 -41.133 1 65.35 ? C23 EPH 600 A 1 HETATM 12 C C24 EPH . . . G 7 23.403 3.417 -40.935 1 65.66 ? C24 EPH 600 A 1 HETATM 13 C C25 EPH . . . G 7 22.595 2.254 -40.356 1 65.48 ? C25 EPH 600 A 1 HETATM 14 C C26 EPH . . . G 7 21.139 2.233 -40.864 1 65.24 ? C26 EPH 600 A 1 HETATM 15 C C27 EPH . . . G 7 20.573 0.799 -40.921 1 64.99 ? C27 EPH 600 A 1 HETATM 16 C C28 EPH . . . G 7 21.614 -0.183 -41.497 1 65.29 ? C28 EPH 600 A 1 HETATM 17 C C29 EPH . . . G 7 20.986 -1.502 -41.942 1 65.99 ? C29 EPH 600 A 1 HETATM 18 C C30 EPH . . . G 7 21.702 -2.702 -41.316 1 66.77 ? C30 EPH 600 A 1 HETATM 19 C C31 EPH . . . G 7 21.009 -3.14 -40.02 1 66.91 ? C31 EPH 600 A 1 HETATM 20 C C32 EPH . . . G 7 22.019 -3.728 -39.036 1 67.06 ? C32 EPH 600 A 1 HETATM 21 C C33 EPH . . . G 7 21.569 -3.507 -37.592 1 67.2 ? C33 EPH 600 A 1 HETATM 22 C C34 EPH . . . G 7 21.949 -4.705 -36.724 1 66.54 ? C34 EPH 600 A 1 HETATM 23 C C37 EPH . . . G 7 24.841 12.406 -40.011 1 73.08 ? C37 EPH 600 A 1 HETATM 24 O O5 EPH . . . G 7 23.864 12.914 -39.083 1 76.68 ? O5 EPH 600 A 1 HETATM 25 C C3 EPH . . . G 7 22.652 9.97 -39.372 1 70.17 ? C3 EPH 600 A 1 HETATM 26 O O1 EPH . . . G 7 23.976 10.15 -39.664 1 70.39 ? O1 EPH 600 A 1 HETATM 27 O O3 EPH . . . G 7 21.805 10.798 -39.696 1 70.95 ? O3 EPH 600 A 1 HETATM 28 C C5 EPH . . . G 7 22.221 8.72 -38.618 1 70.54 ? C5 EPH 600 A 1 HETATM 29 C C6 EPH . . . G 7 22.619 7.463 -39.391 1 71.07 ? C6 EPH 600 A 1 HETATM 30 C C7 EPH . . . G 7 21.996 6.224 -38.768 1 71.6 ? C7 EPH 600 A 1 HETATM 31 C C8 EPH . . . G 7 23.015 5.501 -37.891 1 72.58 ? C8 EPH 600 A 1 HETATM 32 C C9 EPH . . . G 7 22.381 4.273 -37.228 1 73.63 ? C9 EPH 600 A 1 HETATM 33 C C10 EPH . . . G 7 23.45 3.238 -36.88 1 73.56 ? C10 EPH 600 A 1 HETATM 34 C C11 EPH . . . G 7 22.909 2.211 -35.898 1 73.91 ? C11 EPH 600 A 1 HETATM 35 C C12 EPH . . . G 7 23.229 0.789 -36.34 1 74.87 ? C12 EPH 600 A 1 HETATM 36 C C13 EPH . . . G 7 24.671 0.397 -35.99 1 76.08 ? C13 EPH 600 A 1 HETATM 37 C C14 EPH . . . G 7 24.961 -1.064 -36.357 1 77.54 ? C14 EPH 600 A 1 HETATM 38 C C15 EPH . . . G 7 24.548 -1.392 -37.804 1 78.8 ? C15 EPH 600 A 1 HETATM 39 C C16 EPH . . . G 7 25.739 -1.811 -38.66 1 79.21 ? C16 EPH 600 A 1 HETATM 40 C C17 EPH . . . G 7 26.466 -0.584 -39.203 1 79.39 ? C17 EPH 600 A 1 HETATM 41 C C35 EPH . . . G 7 27.768 -0.352 -38.438 1 79.09 ? C35 EPH 600 A 1 HETATM 42 C C36 EPH . . . G 7 28.347 1.002 -38.818 1 79.48 ? C36 EPH 600 A 1 HETATM 43 P P1 EPH . . . G 7 24.258 13.742 -37.747 1 79.2 ? P1 EPH 600 A 1 HETATM 44 O O6 EPH . . . G 7 23.002 13.975 -36.995 1 78.87 ? O6 EPH 600 A 1 HETATM 45 O O7 EPH . . . G 7 25.128 14.894 -38.115 1 78.57 ? O7 EPH 600 A 1 HETATM 46 O O8 EPH . . . G 7 25.162 12.654 -36.921 1 79.72 ? O8 EPH 600 A 1 HETATM 47 C C38 EPH . . . G 7 25.644 12.93 -35.59 1 81.27 ? C38 EPH 600 A 1 HETATM 48 C C39 EPH . . . G 7 27.167 13.138 -35.596 1 82.21 ? C39 EPH 600 A 1 HETATM 49 N N1 EPH . . . G 7 27.835 11.978 -36.211 1 82.43 ? N1 EPH 600 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 49 #