data_2R4X # _model_server_result.job_id BNHddUKRyufDQSRAf2uGUA _model_server_result.datetime_utc '2024-11-18 08:42:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r4x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":147}' # _entry.id 2R4X # _exptl.entry_id 2R4X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2R4X _cell.length_a 92.25 _cell.length_b 44.37 _cell.length_c 143.86 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R4X _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 101 A HIS 101 1_555 C FE HEM . A HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc2 C FE HEM . A HEM 147 1_555 D C CMO . A CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc3 B NE2 HIS 101 B HIS 101 1_555 E FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc4 E FE HEM . B HEM 147 1_555 F C CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 130 n n CHA C4D HEM doub 131 n n CHA HHA HEM sing 132 n n CHB C4A HEM sing 133 n n CHB C1B HEM doub 134 n n CHB HHB HEM sing 135 n n CHC C4B HEM sing 136 n n CHC C1C HEM doub 137 n n CHC HHC HEM sing 138 n n CHD C4C HEM doub 139 n n CHD C1D HEM sing 140 n n CHD HHD HEM sing 141 n n C1A C2A HEM doub 142 n y C1A NA HEM sing 143 n y C2A C3A HEM sing 144 n y C2A CAA HEM sing 145 n n C3A C4A HEM doub 146 n y C3A CMA HEM sing 147 n n C4A NA HEM sing 148 n y CMA HMA HEM sing 149 n n CMA HMAA HEM sing 150 n n CMA HMAB HEM sing 151 n n CAA CBA HEM sing 152 n n CAA HAA HEM sing 153 n n CAA HAAA HEM sing 154 n n CBA CGA HEM sing 155 n n CBA HBA HEM sing 156 n n CBA HBAA HEM sing 157 n n CGA O1A HEM doub 158 n n CGA O2A HEM sing 159 n n C1B C2B HEM sing 160 n n C1B NB HEM sing 161 n n C2B C3B HEM doub 162 n n C2B CMB HEM sing 163 n n C3B C4B HEM sing 164 n n C3B CAB HEM sing 165 n n C4B NB HEM doub 166 n n CMB HMB HEM sing 167 n n CMB HMBA HEM sing 168 n n CMB HMBB HEM sing 169 n n CAB CBB HEM doub 170 n n CAB HAB HEM sing 171 n n CBB HBB HEM sing 172 n n CBB HBBA HEM sing 173 n n C1C C2C HEM sing 174 n y C1C NC HEM sing 175 n y C2C C3C HEM doub 176 n y C2C CMC HEM sing 177 n n C3C C4C HEM sing 178 n y C3C CAC HEM sing 179 n n C4C NC HEM sing 180 n y CMC HMC HEM sing 181 n n CMC HMCA HEM sing 182 n n CMC HMCB HEM sing 183 n n CAC CBC HEM doub 184 n n CAC HAC HEM sing 185 n n CBC HBC HEM sing 186 n n CBC HBCA HEM sing 187 n n C1D C2D HEM sing 188 n n C1D ND HEM doub 189 n n C2D C3D HEM doub 190 n n C2D CMD HEM sing 191 n n C3D C4D HEM sing 192 n n C3D CAD HEM sing 193 n n C4D ND HEM sing 194 n n CMD HMD HEM sing 195 n n CMD HMDA HEM sing 196 n n CMD HMDB HEM sing 197 n n CAD CBD HEM sing 198 n n CAD HAD HEM sing 199 n n CAD HADA HEM sing 200 n n CBD CGD HEM sing 201 n n CBD HBD HEM sing 202 n n CBD HBDA HEM sing 203 n n CGD O1D HEM doub 204 n n CGD O2D HEM sing 205 n n O2A H2A HEM sing 206 n n O2D H2D HEM sing 207 n n FE NA HEM sing 208 n n FE NB HEM sing 209 n n FE NC HEM sing 210 n n FE ND HEM sing 211 n n # _atom_sites.entry_id 2R4X _atom_sites.fract_transf_matrix[1][1] 0.01084 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022538 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 147 147 HEM HEM . D 3 CMO A 1 148 148 CMO CMO . E 2 HEM B 1 147 147 HEM HEM . F 3 CMO B 1 148 148 CMO CMO . G 4 HOH A 1 149 2 HOH HOH . G 4 HOH A 2 150 4 HOH HOH . G 4 HOH A 3 151 5 HOH HOH . G 4 HOH A 4 152 6 HOH HOH . G 4 HOH A 5 153 7 HOH HOH . G 4 HOH A 6 154 9 HOH HOH . G 4 HOH A 7 155 16 HOH HOH . G 4 HOH A 8 156 17 HOH HOH . G 4 HOH A 9 157 20 HOH HOH . G 4 HOH A 10 158 22 HOH HOH . G 4 HOH A 11 159 25 HOH HOH . G 4 HOH A 12 160 27 HOH HOH . G 4 HOH A 13 161 29 HOH HOH . G 4 HOH A 14 162 30 HOH HOH . G 4 HOH A 15 163 36 HOH HOH . G 4 HOH A 16 164 37 HOH HOH . G 4 HOH A 17 165 41 HOH HOH . G 4 HOH A 18 166 43 HOH HOH . G 4 HOH A 19 167 46 HOH HOH . G 4 HOH A 20 168 48 HOH HOH . G 4 HOH A 21 169 50 HOH HOH . G 4 HOH A 22 170 52 HOH HOH . G 4 HOH A 23 171 53 HOH HOH . G 4 HOH A 24 172 60 HOH HOH . G 4 HOH A 25 173 64 HOH HOH . G 4 HOH A 26 174 65 HOH HOH . G 4 HOH A 27 175 70 HOH HOH . G 4 HOH A 28 176 77 HOH HOH . G 4 HOH A 29 177 79 HOH HOH . G 4 HOH A 30 178 83 HOH HOH . G 4 HOH A 31 179 90 HOH HOH . G 4 HOH A 32 180 98 HOH HOH . G 4 HOH A 33 181 118 HOH HOH . G 4 HOH A 34 182 123 HOH HOH . G 4 HOH A 35 183 127 HOH HOH . G 4 HOH A 36 184 128 HOH HOH . G 4 HOH A 37 185 133 HOH HOH . G 4 HOH A 38 186 138 HOH HOH . G 4 HOH A 39 187 140 HOH HOH . G 4 HOH A 40 188 142 HOH HOH . G 4 HOH A 41 189 145 HOH HOH . G 4 HOH A 42 190 146 HOH HOH . G 4 HOH A 43 191 159 HOH HOH . G 4 HOH A 44 192 164 HOH HOH . H 4 HOH B 1 149 3 HOH HOH . H 4 HOH B 2 150 8 HOH HOH . H 4 HOH B 3 151 10 HOH HOH . H 4 HOH B 4 152 11 HOH HOH . H 4 HOH B 5 153 12 HOH HOH . H 4 HOH B 6 154 13 HOH HOH . H 4 HOH B 7 155 14 HOH HOH . H 4 HOH B 8 156 15 HOH HOH . H 4 HOH B 9 157 18 HOH HOH . H 4 HOH B 10 158 19 HOH HOH . H 4 HOH B 11 159 21 HOH HOH . H 4 HOH B 12 160 23 HOH HOH . H 4 HOH B 13 161 24 HOH HOH . H 4 HOH B 14 162 26 HOH HOH . H 4 HOH B 15 163 28 HOH HOH . H 4 HOH B 16 164 31 HOH HOH . H 4 HOH B 17 165 32 HOH HOH . H 4 HOH B 18 166 33 HOH HOH . H 4 HOH B 19 167 34 HOH HOH . H 4 HOH B 20 168 35 HOH HOH . H 4 HOH B 21 169 38 HOH HOH . H 4 HOH B 22 170 39 HOH HOH . H 4 HOH B 23 171 40 HOH HOH . H 4 HOH B 24 172 42 HOH HOH . H 4 HOH B 25 173 44 HOH HOH . H 4 HOH B 26 174 45 HOH HOH . H 4 HOH B 27 175 51 HOH HOH . H 4 HOH B 28 176 55 HOH HOH . H 4 HOH B 29 177 56 HOH HOH . H 4 HOH B 30 178 57 HOH HOH . H 4 HOH B 31 179 58 HOH HOH . H 4 HOH B 32 180 63 HOH HOH . H 4 HOH B 33 181 66 HOH HOH . H 4 HOH B 34 182 67 HOH HOH . H 4 HOH B 35 183 68 HOH HOH . H 4 HOH B 36 184 69 HOH HOH . H 4 HOH B 37 185 74 HOH HOH . H 4 HOH B 38 186 75 HOH HOH . H 4 HOH B 39 187 80 HOH HOH . H 4 HOH B 40 188 82 HOH HOH . H 4 HOH B 41 189 84 HOH HOH . H 4 HOH B 42 190 86 HOH HOH . H 4 HOH B 43 191 88 HOH HOH . H 4 HOH B 44 192 92 HOH HOH . H 4 HOH B 45 193 96 HOH HOH . H 4 HOH B 46 194 105 HOH HOH . H 4 HOH B 47 195 115 HOH HOH . H 4 HOH B 48 196 132 HOH HOH . H 4 HOH B 49 197 143 HOH HOH . H 4 HOH B 50 198 144 HOH HOH . H 4 HOH B 51 199 147 HOH HOH . H 4 HOH B 52 200 157 HOH HOH . H 4 HOH B 53 201 158 HOH HOH . H 4 HOH B 54 202 163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 17.098 9.722 17.971 1 21.68 ? CHA HEM 147 A 1 HETATM 2 C CHB HEM . . . C 2 15.042 8.043 22.084 1 21.68 ? CHB HEM 147 A 1 HETATM 3 C CHC HEM . . . C 2 19.419 6.481 23.604 1 21.68 ? CHC HEM 147 A 1 HETATM 4 C CHD HEM . . . C 2 21.255 7.521 19.239 1 21.68 ? CHD HEM 147 A 1 HETATM 5 C C1A HEM . . . C 2 16.161 9.42 18.978 1 21.68 ? C1A HEM 147 A 1 HETATM 6 C C2A HEM . . . C 2 14.771 9.822 18.985 1 21.68 ? C2A HEM 147 A 1 HETATM 7 C C3A HEM . . . C 2 14.214 9.348 20.108 1 21.68 ? C3A HEM 147 A 1 HETATM 8 C C4A HEM . . . C 2 15.249 8.68 20.869 1 21.68 ? C4A HEM 147 A 1 HETATM 9 C CMA HEM . . . C 2 12.736 9.448 20.46 1 21.68 ? CMA HEM 147 A 1 HETATM 10 C CAA HEM . . . C 2 14.04 10.764 18.053 1 21.68 ? CAA HEM 147 A 1 HETATM 11 C CBA HEM . . . C 2 13.217 10.122 16.954 1 21.68 ? CBA HEM 147 A 1 HETATM 12 C CGA HEM . . . C 2 14.073 9.44 15.906 1 21.68 ? CGA HEM 147 A 1 HETATM 13 O O1A HEM . . . C 2 14.727 10.144 15.096 1 21.68 ? O1A HEM 147 A 1 HETATM 14 O O2A HEM . . . C 2 14.095 8.189 15.898 1 21.68 ? O2A HEM 147 A 1 HETATM 15 C C1B HEM . . . C 2 16.042 7.367 22.794 1 21.68 ? C1B HEM 147 A 1 HETATM 16 C C2B HEM . . . C 2 15.846 6.812 24.132 1 21.68 ? C2B HEM 147 A 1 HETATM 17 C C3B HEM . . . C 2 17.078 6.453 24.619 1 21.68 ? C3B HEM 147 A 1 HETATM 18 C C4B HEM . . . C 2 18.035 6.721 23.518 1 21.68 ? C4B HEM 147 A 1 HETATM 19 C CMB HEM . . . C 2 14.481 6.614 24.776 1 21.68 ? CMB HEM 147 A 1 HETATM 20 C CAB HEM . . . C 2 17.443 6.02 25.91 1 21.68 ? CAB HEM 147 A 1 HETATM 21 C CBB HEM . . . C 2 16.667 5.208 26.825 1 21.68 ? CBB HEM 147 A 1 HETATM 22 C C1C HEM . . . C 2 20.314 6.717 22.573 1 21.68 ? C1C HEM 147 A 1 HETATM 23 C C2C HEM . . . C 2 21.723 6.398 22.638 1 21.68 ? C2C HEM 147 A 1 HETATM 24 C C3C HEM . . . C 2 22.247 6.64 21.388 1 21.68 ? C3C HEM 147 A 1 HETATM 25 C C4C HEM . . . C 2 21.138 7.112 20.567 1 21.68 ? C4C HEM 147 A 1 HETATM 26 C CMC HEM . . . C 2 22.447 5.849 23.864 1 21.68 ? CMC HEM 147 A 1 HETATM 27 C CAC HEM . . . C 2 23.553 6.466 20.931 1 21.68 ? CAC HEM 147 A 1 HETATM 28 C CBC HEM . . . C 2 24.718 6.07 21.676 1 21.68 ? CBC HEM 147 A 1 HETATM 29 C C1D HEM . . . C 2 20.273 8.203 18.525 1 21.68 ? C1D HEM 147 A 1 HETATM 30 C C2D HEM . . . C 2 20.549 8.876 17.266 1 21.68 ? C2D HEM 147 A 1 HETATM 31 C C3D HEM . . . C 2 19.432 9.59 16.943 1 21.68 ? C3D HEM 147 A 1 HETATM 32 C C4D HEM . . . C 2 18.436 9.308 17.994 1 21.68 ? C4D HEM 147 A 1 HETATM 33 C CMD HEM . . . C 2 21.849 8.804 16.46 1 21.68 ? CMD HEM 147 A 1 HETATM 34 C CAD HEM . . . C 2 19.314 10.518 15.732 1 21.68 ? CAD HEM 147 A 1 HETATM 35 C CBD HEM . . . C 2 19.322 11.977 16.148 1 21.68 ? CBD HEM 147 A 1 HETATM 36 C CGD HEM . . . C 2 19.06 12.921 14.991 1 21.68 ? CGD HEM 147 A 1 HETATM 37 O O1D HEM . . . C 2 19.934 13.033 14.1 1 21.68 ? O1D HEM 147 A 1 HETATM 38 O O2D HEM . . . C 2 17.976 13.547 14.976 1 21.68 ? O2D HEM 147 A 1 HETATM 39 N NA HEM . . . C 2 16.457 8.704 20.165 1 21.68 ? NA HEM 147 A 1 HETATM 40 N NB HEM . . . C 2 17.388 7.266 22.404 1 21.68 ? NB HEM 147 A 1 HETATM 41 N NC HEM . . . C 2 19.961 7.187 21.309 1 21.68 ? NC HEM 147 A 1 HETATM 42 N ND HEM . . . C 2 18.993 8.488 18.981 1 21.68 ? ND HEM 147 A 1 HETATM 43 FE FE HEM . . . C 2 18.197 7.929 20.725 1 21.68 ? FE HEM 147 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 43 #