data_2R58 # _model_server_result.job_id CpZu3gi_XF4aOE_azcxq0g _model_server_result.datetime_utc '2025-02-05 16:48:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r58 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":436}' # _entry.id 2R58 # _exptl.entry_id 2R58 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 174.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-DIMETHYL-LYSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2R58 _cell.length_a 83.12 _cell.length_b 83.12 _cell.length_c 75.768 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R58 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 N2 O2' _chem_comp.formula_weight 174.241 _chem_comp.id MLY _chem_comp.mon_nstd_flag n _chem_comp.name N-DIMETHYL-LYSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA MLY sing 237 n n N H MLY sing 238 n n N H2 MLY sing 239 n n CA CB MLY sing 240 n n CA C MLY sing 241 n n CA HA MLY sing 242 n n CB CG MLY sing 243 n n CB HB2 MLY sing 244 n n CB HB3 MLY sing 245 n n CG CD MLY sing 246 n n CG HG2 MLY sing 247 n n CG HG3 MLY sing 248 n n CD CE MLY sing 249 n n CD HD2 MLY sing 250 n n CD HD3 MLY sing 251 n n CE NZ MLY sing 252 n n CE HE2 MLY sing 253 n n CE HE3 MLY sing 254 n n NZ CH1 MLY sing 255 n n NZ CH2 MLY sing 256 n n CH1 HH11 MLY sing 257 n n CH1 HH12 MLY sing 258 n n CH1 HH13 MLY sing 259 n n CH2 HH21 MLY sing 260 n n CH2 HH22 MLY sing 261 n n CH2 HH23 MLY sing 262 n n C O MLY doub 263 n n C OXT MLY sing 264 n n OXT HXT MLY sing 265 n n # _atom_sites.entry_id 2R58 _atom_sites.fract_transf_matrix[1][1] 0.012031 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012031 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLY A 1 436 386 MLY MLY . C 3 HOH A 1 437 387 HOH HOH . C 3 HOH A 2 438 388 HOH HOH . C 3 HOH A 3 439 389 HOH HOH . C 3 HOH A 4 440 390 HOH HOH . C 3 HOH A 5 441 391 HOH HOH . C 3 HOH A 6 442 392 HOH HOH . C 3 HOH A 7 443 393 HOH HOH . C 3 HOH A 8 444 394 HOH HOH . C 3 HOH A 9 445 395 HOH HOH . C 3 HOH A 10 446 396 HOH HOH . C 3 HOH A 11 447 397 HOH HOH . C 3 HOH A 12 448 398 HOH HOH . C 3 HOH A 13 449 399 HOH HOH . C 3 HOH A 14 450 400 HOH HOH . C 3 HOH A 15 451 401 HOH HOH . C 3 HOH A 16 452 402 HOH HOH . C 3 HOH A 17 453 403 HOH HOH . C 3 HOH A 18 454 404 HOH HOH . C 3 HOH A 19 455 405 HOH HOH . C 3 HOH A 20 456 406 HOH HOH . C 3 HOH A 21 457 407 HOH HOH . C 3 HOH A 22 458 408 HOH HOH . C 3 HOH A 23 459 409 HOH HOH . C 3 HOH A 24 460 410 HOH HOH . C 3 HOH A 25 461 411 HOH HOH . C 3 HOH A 26 462 412 HOH HOH . C 3 HOH A 27 463 413 HOH HOH . C 3 HOH A 28 464 414 HOH HOH . C 3 HOH A 29 465 415 HOH HOH . C 3 HOH A 30 466 416 HOH HOH . C 3 HOH A 31 467 417 HOH HOH . C 3 HOH A 32 468 418 HOH HOH . C 3 HOH A 33 469 419 HOH HOH . C 3 HOH A 34 470 420 HOH HOH . C 3 HOH A 35 471 421 HOH HOH . C 3 HOH A 36 472 422 HOH HOH . C 3 HOH A 37 473 423 HOH HOH . C 3 HOH A 38 474 424 HOH HOH . C 3 HOH A 39 475 425 HOH HOH . C 3 HOH A 40 476 426 HOH HOH . C 3 HOH A 41 477 427 HOH HOH . C 3 HOH A 42 478 428 HOH HOH . C 3 HOH A 43 479 429 HOH HOH . C 3 HOH A 44 480 430 HOH HOH . C 3 HOH A 45 481 431 HOH HOH . C 3 HOH A 46 482 432 HOH HOH . C 3 HOH A 47 483 433 HOH HOH . C 3 HOH A 48 484 434 HOH HOH . C 3 HOH A 49 485 435 HOH HOH . C 3 HOH A 50 486 436 HOH HOH . C 3 HOH A 51 487 437 HOH HOH . C 3 HOH A 52 488 438 HOH HOH . C 3 HOH A 53 489 439 HOH HOH . C 3 HOH A 54 490 440 HOH HOH . C 3 HOH A 55 491 441 HOH HOH . C 3 HOH A 56 492 442 HOH HOH . C 3 HOH A 57 493 443 HOH HOH . C 3 HOH A 58 494 444 HOH HOH . C 3 HOH A 59 495 445 HOH HOH . C 3 HOH A 60 496 446 HOH HOH . C 3 HOH A 61 497 447 HOH HOH . C 3 HOH A 62 498 448 HOH HOH . C 3 HOH A 63 499 449 HOH HOH . C 3 HOH A 64 500 450 HOH HOH . C 3 HOH A 65 501 451 HOH HOH . C 3 HOH A 66 502 452 HOH HOH . C 3 HOH A 67 503 453 HOH HOH . C 3 HOH A 68 504 454 HOH HOH . C 3 HOH A 69 505 455 HOH HOH . C 3 HOH A 70 506 456 HOH HOH . C 3 HOH A 71 507 457 HOH HOH . C 3 HOH A 72 508 458 HOH HOH . C 3 HOH A 73 509 459 HOH HOH . C 3 HOH A 74 510 460 HOH HOH . C 3 HOH A 75 511 461 HOH HOH . C 3 HOH A 76 512 462 HOH HOH . C 3 HOH A 77 513 463 HOH HOH . C 3 HOH A 78 514 464 HOH HOH . C 3 HOH A 79 515 465 HOH HOH . C 3 HOH A 80 516 466 HOH HOH . C 3 HOH A 81 517 467 HOH HOH . C 3 HOH A 82 518 468 HOH HOH . C 3 HOH A 83 519 469 HOH HOH . C 3 HOH A 84 520 470 HOH HOH . C 3 HOH A 85 521 471 HOH HOH . C 3 HOH A 86 522 472 HOH HOH . C 3 HOH A 87 523 473 HOH HOH . C 3 HOH A 88 524 474 HOH HOH . C 3 HOH A 89 525 475 HOH HOH . C 3 HOH A 90 526 476 HOH HOH . C 3 HOH A 91 527 477 HOH HOH . C 3 HOH A 92 528 478 HOH HOH . C 3 HOH A 93 529 479 HOH HOH . C 3 HOH A 94 530 480 HOH HOH . C 3 HOH A 95 531 481 HOH HOH . C 3 HOH A 96 532 482 HOH HOH . C 3 HOH A 97 533 483 HOH HOH . C 3 HOH A 98 534 484 HOH HOH . C 3 HOH A 99 535 485 HOH HOH . C 3 HOH A 100 536 486 HOH HOH . C 3 HOH A 101 537 487 HOH HOH . C 3 HOH A 102 538 488 HOH HOH . C 3 HOH A 103 539 489 HOH HOH . C 3 HOH A 104 540 490 HOH HOH . C 3 HOH A 105 541 491 HOH HOH . C 3 HOH A 106 542 492 HOH HOH . C 3 HOH A 107 543 493 HOH HOH . C 3 HOH A 108 544 494 HOH HOH . C 3 HOH A 109 545 495 HOH HOH . C 3 HOH A 110 546 496 HOH HOH . C 3 HOH A 111 547 497 HOH HOH . C 3 HOH A 112 548 498 HOH HOH . C 3 HOH A 113 549 499 HOH HOH . C 3 HOH A 114 550 500 HOH HOH . C 3 HOH A 115 551 501 HOH HOH . C 3 HOH A 116 552 502 HOH HOH . C 3 HOH A 117 553 503 HOH HOH . C 3 HOH A 118 554 504 HOH HOH . C 3 HOH A 119 555 505 HOH HOH . C 3 HOH A 120 556 506 HOH HOH . C 3 HOH A 121 557 507 HOH HOH . C 3 HOH A 122 558 508 HOH HOH . C 3 HOH A 123 559 509 HOH HOH . C 3 HOH A 124 560 510 HOH HOH . C 3 HOH A 125 561 511 HOH HOH . C 3 HOH A 126 562 512 HOH HOH . C 3 HOH A 127 563 513 HOH HOH . C 3 HOH A 128 564 514 HOH HOH . C 3 HOH A 129 565 515 HOH HOH . C 3 HOH A 130 566 516 HOH HOH . C 3 HOH A 131 567 517 HOH HOH . C 3 HOH A 132 568 518 HOH HOH . C 3 HOH A 133 569 519 HOH HOH . C 3 HOH A 134 570 520 HOH HOH . C 3 HOH A 135 571 521 HOH HOH . C 3 HOH A 136 572 522 HOH HOH . C 3 HOH A 137 573 523 HOH HOH . C 3 HOH A 138 574 524 HOH HOH . C 3 HOH A 139 575 525 HOH HOH . C 3 HOH A 140 576 526 HOH HOH . C 3 HOH A 141 577 527 HOH HOH . C 3 HOH A 142 578 528 HOH HOH . C 3 HOH A 143 579 529 HOH HOH . C 3 HOH A 144 580 530 HOH HOH . C 3 HOH A 145 581 531 HOH HOH . C 3 HOH A 146 582 532 HOH HOH . C 3 HOH A 147 583 533 HOH HOH . C 3 HOH A 148 584 534 HOH HOH . C 3 HOH A 149 585 535 HOH HOH . C 3 HOH A 150 586 536 HOH HOH . C 3 HOH A 151 587 537 HOH HOH . C 3 HOH A 152 588 538 HOH HOH . C 3 HOH A 153 589 539 HOH HOH . C 3 HOH A 154 590 540 HOH HOH . C 3 HOH A 155 591 541 HOH HOH . C 3 HOH A 156 592 542 HOH HOH . C 3 HOH A 157 593 543 HOH HOH . C 3 HOH A 158 594 544 HOH HOH . C 3 HOH A 159 595 545 HOH HOH . C 3 HOH A 160 596 546 HOH HOH . C 3 HOH A 161 597 547 HOH HOH . C 3 HOH A 162 598 548 HOH HOH . C 3 HOH A 163 599 549 HOH HOH . C 3 HOH A 164 600 550 HOH HOH . C 3 HOH A 165 601 551 HOH HOH . C 3 HOH A 166 602 552 HOH HOH . C 3 HOH A 167 603 553 HOH HOH . C 3 HOH A 168 604 554 HOH HOH . C 3 HOH A 169 605 555 HOH HOH . C 3 HOH A 170 606 556 HOH HOH . C 3 HOH A 171 607 557 HOH HOH . C 3 HOH A 172 608 558 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N MLY . . . B 2 -27.431 -20.995 -15.702 1 64.32 ? N MLY 436 A 1 HETATM 2 C CA MLY . . . B 2 -27.107 -20.759 -17.144 1 64.05 ? CA MLY 436 A 1 HETATM 3 C CB MLY . . . B 2 -25.82 -19.943 -17.242 1 63.61 ? CB MLY 436 A 1 HETATM 4 C CG MLY . . . B 2 -25.624 -19.467 -18.673 1 62.39 ? CG MLY 436 A 1 HETATM 5 C CD MLY . . . B 2 -24.578 -18.371 -18.775 1 58.97 ? CD MLY 436 A 1 HETATM 6 C CE MLY . . . B 2 -24.105 -18.251 -20.22 1 56.9 ? CE MLY 436 A 1 HETATM 7 N NZ MLY . . . B 2 -23.231 -17.077 -20.381 1 54.49 ? NZ MLY 436 A 1 HETATM 8 C CH1 MLY . . . B 2 -22.985 -16.836 -21.812 1 53.02 ? CH1 MLY 436 A 1 HETATM 9 C CH2 MLY . . . B 2 -21.954 -17.324 -19.698 1 53.72 ? CH2 MLY 436 A 1 HETATM 10 C C MLY . . . B 2 -26.969 -22.041 -17.928 1 64.35 ? C MLY 436 A 1 HETATM 11 O O MLY . . . B 2 -26.241 -22.951 -17.527 1 64.4 ? O MLY 436 A 1 HETATM 12 O OXT MLY . . . B 2 -27.567 -22.21 -18.999 1 64.47 ? OXT MLY 436 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #