data_2R5A
#
_model_server_result.job_id            by_84Qc68QPJKRnEuN7aDA 
_model_server_result.datetime_utc      '2024-12-27 01:56:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2r5a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":436}' 
#
_entry.id    2R5A 
#
_exptl.entry_id    2R5A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              160.214 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-METHYL-LYSINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2R5A 
_cell.length_a            83.03 
_cell.length_b            83.03 
_cell.length_c            75.79 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2R5A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C7 H16 N2 O2' 
_chem_comp.formula_weight    160.214 
_chem_comp.id                MLZ 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              N-METHYL-LYSINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA MLZ sing 237 n n 
N H MLZ sing 238 n n 
N H2 MLZ sing 239 n n 
CA CB MLZ sing 240 n n 
CA C MLZ sing 241 n n 
CA HA MLZ sing 242 n n 
CB CG MLZ sing 243 n n 
CB HB2 MLZ sing 244 n n 
CB HB3 MLZ sing 245 n n 
CG CD MLZ sing 246 n n 
CG HG2 MLZ sing 247 n n 
CG HG3 MLZ sing 248 n n 
CD CE MLZ sing 249 n n 
CD HD2 MLZ sing 250 n n 
CD HD3 MLZ sing 251 n n 
CE NZ MLZ sing 252 n n 
CE HE2 MLZ sing 253 n n 
CE HE3 MLZ sing 254 n n 
NZ CM MLZ sing 255 n n 
NZ HZ MLZ sing 256 n n 
CM HCM1 MLZ sing 257 n n 
CM HCM2 MLZ sing 258 n n 
CM HCM3 MLZ sing 259 n n 
C O MLZ doub 260 n n 
C OXT MLZ sing 261 n n 
OXT HXT MLZ sing 262 n n 
#
_atom_sites.entry_id                     2R5A 
_atom_sites.fract_transf_matrix[1][1]    0.012044 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012044 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013194 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MLZ A 1 436 386 MLZ MLZ . 
C 3 HOH A 1 437 387 HOH HOH . 
C 3 HOH A 2 438 388 HOH HOH . 
C 3 HOH A 3 439 389 HOH HOH . 
C 3 HOH A 4 440 390 HOH HOH . 
C 3 HOH A 5 441 391 HOH HOH . 
C 3 HOH A 6 442 392 HOH HOH . 
C 3 HOH A 7 443 393 HOH HOH . 
C 3 HOH A 8 444 394 HOH HOH . 
C 3 HOH A 9 445 395 HOH HOH . 
C 3 HOH A 10 446 396 HOH HOH . 
C 3 HOH A 11 447 397 HOH HOH . 
C 3 HOH A 12 448 398 HOH HOH . 
C 3 HOH A 13 449 399 HOH HOH . 
C 3 HOH A 14 450 400 HOH HOH . 
C 3 HOH A 15 451 401 HOH HOH . 
C 3 HOH A 16 452 402 HOH HOH . 
C 3 HOH A 17 453 403 HOH HOH . 
C 3 HOH A 18 454 404 HOH HOH . 
C 3 HOH A 19 455 405 HOH HOH . 
C 3 HOH A 20 456 406 HOH HOH . 
C 3 HOH A 21 457 407 HOH HOH . 
C 3 HOH A 22 458 408 HOH HOH . 
C 3 HOH A 23 459 409 HOH HOH . 
C 3 HOH A 24 460 410 HOH HOH . 
C 3 HOH A 25 461 411 HOH HOH . 
C 3 HOH A 26 462 412 HOH HOH . 
C 3 HOH A 27 463 413 HOH HOH . 
C 3 HOH A 28 464 414 HOH HOH . 
C 3 HOH A 29 465 415 HOH HOH . 
C 3 HOH A 30 466 416 HOH HOH . 
C 3 HOH A 31 467 417 HOH HOH . 
C 3 HOH A 32 468 418 HOH HOH . 
C 3 HOH A 33 469 419 HOH HOH . 
C 3 HOH A 34 470 420 HOH HOH . 
C 3 HOH A 35 471 421 HOH HOH . 
C 3 HOH A 36 472 422 HOH HOH . 
C 3 HOH A 37 473 423 HOH HOH . 
C 3 HOH A 38 474 424 HOH HOH . 
C 3 HOH A 39 475 425 HOH HOH . 
C 3 HOH A 40 476 426 HOH HOH . 
C 3 HOH A 41 477 427 HOH HOH . 
C 3 HOH A 42 478 428 HOH HOH . 
C 3 HOH A 43 479 429 HOH HOH . 
C 3 HOH A 44 480 430 HOH HOH . 
C 3 HOH A 45 481 431 HOH HOH . 
C 3 HOH A 46 482 432 HOH HOH . 
C 3 HOH A 47 483 433 HOH HOH . 
C 3 HOH A 48 484 434 HOH HOH . 
C 3 HOH A 49 485 435 HOH HOH . 
C 3 HOH A 50 486 436 HOH HOH . 
C 3 HOH A 51 487 437 HOH HOH . 
C 3 HOH A 52 488 438 HOH HOH . 
C 3 HOH A 53 489 439 HOH HOH . 
C 3 HOH A 54 490 440 HOH HOH . 
C 3 HOH A 55 491 441 HOH HOH . 
C 3 HOH A 56 492 442 HOH HOH . 
C 3 HOH A 57 493 443 HOH HOH . 
C 3 HOH A 58 494 444 HOH HOH . 
C 3 HOH A 59 495 445 HOH HOH . 
C 3 HOH A 60 496 446 HOH HOH . 
C 3 HOH A 61 497 447 HOH HOH . 
C 3 HOH A 62 498 448 HOH HOH . 
C 3 HOH A 63 499 449 HOH HOH . 
C 3 HOH A 64 500 450 HOH HOH . 
C 3 HOH A 65 501 451 HOH HOH . 
C 3 HOH A 66 502 452 HOH HOH . 
C 3 HOH A 67 503 453 HOH HOH . 
C 3 HOH A 68 504 454 HOH HOH . 
C 3 HOH A 69 505 455 HOH HOH . 
C 3 HOH A 70 506 456 HOH HOH . 
C 3 HOH A 71 507 457 HOH HOH . 
C 3 HOH A 72 508 458 HOH HOH . 
C 3 HOH A 73 509 459 HOH HOH . 
C 3 HOH A 74 510 460 HOH HOH . 
C 3 HOH A 75 511 461 HOH HOH . 
C 3 HOH A 76 512 462 HOH HOH . 
C 3 HOH A 77 513 463 HOH HOH . 
C 3 HOH A 78 514 464 HOH HOH . 
C 3 HOH A 79 515 465 HOH HOH . 
C 3 HOH A 80 516 466 HOH HOH . 
C 3 HOH A 81 517 467 HOH HOH . 
C 3 HOH A 82 518 468 HOH HOH . 
C 3 HOH A 83 519 469 HOH HOH . 
C 3 HOH A 84 520 470 HOH HOH . 
C 3 HOH A 85 521 471 HOH HOH . 
C 3 HOH A 86 522 472 HOH HOH . 
C 3 HOH A 87 523 473 HOH HOH . 
C 3 HOH A 88 524 474 HOH HOH . 
C 3 HOH A 89 525 475 HOH HOH . 
C 3 HOH A 90 526 476 HOH HOH . 
C 3 HOH A 91 527 477 HOH HOH . 
C 3 HOH A 92 528 478 HOH HOH . 
C 3 HOH A 93 529 479 HOH HOH . 
C 3 HOH A 94 530 480 HOH HOH . 
C 3 HOH A 95 531 481 HOH HOH . 
C 3 HOH A 96 532 482 HOH HOH . 
C 3 HOH A 97 533 483 HOH HOH . 
C 3 HOH A 98 534 484 HOH HOH . 
C 3 HOH A 99 535 485 HOH HOH . 
C 3 HOH A 100 536 486 HOH HOH . 
C 3 HOH A 101 537 487 HOH HOH . 
C 3 HOH A 102 538 488 HOH HOH . 
C 3 HOH A 103 539 489 HOH HOH . 
C 3 HOH A 104 540 490 HOH HOH . 
C 3 HOH A 105 541 491 HOH HOH . 
C 3 HOH A 106 542 492 HOH HOH . 
C 3 HOH A 107 543 493 HOH HOH . 
C 3 HOH A 108 544 494 HOH HOH . 
C 3 HOH A 109 545 495 HOH HOH . 
C 3 HOH A 110 546 496 HOH HOH . 
C 3 HOH A 111 547 497 HOH HOH . 
C 3 HOH A 112 548 498 HOH HOH . 
C 3 HOH A 113 549 499 HOH HOH . 
C 3 HOH A 114 550 500 HOH HOH . 
C 3 HOH A 115 551 501 HOH HOH . 
C 3 HOH A 116 552 502 HOH HOH . 
C 3 HOH A 117 553 503 HOH HOH . 
C 3 HOH A 118 554 504 HOH HOH . 
C 3 HOH A 119 555 505 HOH HOH . 
C 3 HOH A 120 556 506 HOH HOH . 
C 3 HOH A 121 557 507 HOH HOH . 
C 3 HOH A 122 558 508 HOH HOH . 
C 3 HOH A 123 559 509 HOH HOH . 
C 3 HOH A 124 560 510 HOH HOH . 
C 3 HOH A 125 561 511 HOH HOH . 
C 3 HOH A 126 562 512 HOH HOH . 
C 3 HOH A 127 563 513 HOH HOH . 
C 3 HOH A 128 564 514 HOH HOH . 
C 3 HOH A 129 565 515 HOH HOH . 
C 3 HOH A 130 566 516 HOH HOH . 
C 3 HOH A 131 567 517 HOH HOH . 
C 3 HOH A 132 568 518 HOH HOH . 
C 3 HOH A 133 569 519 HOH HOH . 
C 3 HOH A 134 570 520 HOH HOH . 
C 3 HOH A 135 571 521 HOH HOH . 
C 3 HOH A 136 572 522 HOH HOH . 
C 3 HOH A 137 573 523 HOH HOH . 
C 3 HOH A 138 574 524 HOH HOH . 
C 3 HOH A 139 575 525 HOH HOH . 
C 3 HOH A 140 576 526 HOH HOH . 
C 3 HOH A 141 577 527 HOH HOH . 
C 3 HOH A 142 578 528 HOH HOH . 
C 3 HOH A 143 579 529 HOH HOH . 
C 3 HOH A 144 580 530 HOH HOH . 
C 3 HOH A 145 581 531 HOH HOH . 
C 3 HOH A 146 582 532 HOH HOH . 
C 3 HOH A 147 583 533 HOH HOH . 
C 3 HOH A 148 584 534 HOH HOH . 
C 3 HOH A 149 585 535 HOH HOH . 
C 3 HOH A 150 586 536 HOH HOH . 
C 3 HOH A 151 587 537 HOH HOH . 
C 3 HOH A 152 588 538 HOH HOH . 
C 3 HOH A 153 589 539 HOH HOH . 
C 3 HOH A 154 590 540 HOH HOH . 
C 3 HOH A 155 591 541 HOH HOH . 
C 3 HOH A 156 592 542 HOH HOH . 
C 3 HOH A 157 593 543 HOH HOH . 
C 3 HOH A 158 594 544 HOH HOH . 
C 3 HOH A 159 595 545 HOH HOH . 
C 3 HOH A 160 596 546 HOH HOH . 
C 3 HOH A 161 597 547 HOH HOH . 
C 3 HOH A 162 598 548 HOH HOH . 
C 3 HOH A 163 599 549 HOH HOH . 
C 3 HOH A 164 600 550 HOH HOH . 
C 3 HOH A 165 601 551 HOH HOH . 
C 3 HOH A 166 602 552 HOH HOH . 
C 3 HOH A 167 603 553 HOH HOH . 
C 3 HOH A 168 604 554 HOH HOH . 
C 3 HOH A 169 605 555 HOH HOH . 
C 3 HOH A 170 606 556 HOH HOH . 
C 3 HOH A 171 607 557 HOH HOH . 
C 3 HOH A 172 608 558 HOH HOH . 
C 3 HOH A 173 609 559 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N MLZ . . . B 2 -26.994 -20.526 -15.837 1 69.11 ? N MLZ 436 A 1 
HETATM 2 C CA MLZ . . . B 2 -26.43 -20.552 -17.22 1 68.89 ? CA MLZ 436 A 1 
HETATM 3 C CB MLZ . . . B 2 -25.137 -19.737 -17.298 1 68.55 ? CB MLZ 436 A 1 
HETATM 4 C CG MLZ . . . B 2 -25.07 -19.016 -18.636 1 67.27 ? CG MLZ 436 A 1 
HETATM 5 C CD MLZ . . . B 2 -23.806 -18.183 -18.801 1 65.06 ? CD MLZ 436 A 1 
HETATM 6 C CE MLZ . . . B 2 -23.515 -18.037 -20.287 1 62.74 ? CE MLZ 436 A 1 
HETATM 7 N NZ MLZ . . . B 2 -22.692 -16.901 -20.642 1 60.85 ? NZ MLZ 436 A 1 
HETATM 8 C CM MLZ . . . B 2 -22.704 -16.439 -22.02 1 58.53 ? CM MLZ 436 A 1 
HETATM 9 C C MLZ . . . B 2 -26.153 -21.954 -17.693 1 69.21 ? C MLZ 436 A 1 
HETATM 10 O O MLZ . . . B 2 -25.435 -22.706 -17.026 1 69.11 ? O MLZ 436 A 1 
HETATM 11 O OXT MLZ . . . B 2 -26.62 -22.366 -18.766 1 69.26 ? OXT MLZ 436 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           11 
#