data_2R5V # _model_server_result.job_id c6pCmbGhiaIsgaHSU_nnFQ _model_server_result.datetime_utc '2024-11-19 17:47:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":4113}' # _entry.id 2R5V # _exptl.entry_id 2R5V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2R5V _cell.length_a 106.369 _cell.length_b 106.369 _cell.length_c 75.951 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R5V _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 161 A HIS 161 1_555 C CO CO . A CO 4113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc2 A NE2 HIS 241 A HIS 241 1_555 C CO CO . A CO 4113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc3 A OE1 GLU 320 A GLU 320 1_555 C CO CO . A CO 4113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc4 C CO CO . A CO 4113 1_555 D O11 HHH . A HHH 4114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? metalc ? metalc5 C CO CO . A CO 4113 1_555 D O8 HHH . A HHH 4114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc6 B NE2 HIS 161 B HIS 161 1_555 E CO CO . B CO 4114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc7 B NE2 HIS 241 B HIS 241 1_555 E CO CO . B CO 4114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc8 B OE1 GLU 320 B GLU 320 1_555 E CO CO . B CO 4114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc9 E CO CO . B CO 4114 1_555 G O11 HHH . B HHH 4116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc10 E CO CO . B CO 4114 1_555 G O8 HHH . B HHH 4116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2R5V _atom_sites.fract_transf_matrix[1][1] 0.009401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013166 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO A 1 4113 4113 CO CO . D 3 HHH A 1 4114 2 HHH HHH . E 2 CO B 1 4114 4114 CO CO . F 4 PO4 B 1 4115 212 PO4 PO4 . G 3 HHH B 1 4116 1 HHH HHH . H 5 HOH A 1 4115 2 HOH HOH . H 5 HOH A 2 4116 5 HOH HOH . H 5 HOH A 3 4117 7 HOH HOH . H 5 HOH A 4 4118 8 HOH HOH . H 5 HOH A 5 4119 10 HOH HOH . H 5 HOH A 6 4120 12 HOH HOH . H 5 HOH A 7 4121 14 HOH HOH . H 5 HOH A 8 4122 18 HOH HOH . H 5 HOH A 9 4123 20 HOH HOH . H 5 HOH A 10 4124 22 HOH HOH . H 5 HOH A 11 4125 24 HOH HOH . H 5 HOH A 12 4126 27 HOH HOH . H 5 HOH A 13 4127 28 HOH HOH . H 5 HOH A 14 4128 29 HOH HOH . H 5 HOH A 15 4129 34 HOH HOH . H 5 HOH A 16 4130 35 HOH HOH . H 5 HOH A 17 4131 37 HOH HOH . H 5 HOH A 18 4132 38 HOH HOH . H 5 HOH A 19 4133 39 HOH HOH . H 5 HOH A 20 4134 40 HOH HOH . H 5 HOH A 21 4135 41 HOH HOH . H 5 HOH A 22 4136 43 HOH HOH . H 5 HOH A 23 4137 44 HOH HOH . H 5 HOH A 24 4138 45 HOH HOH . H 5 HOH A 25 4139 48 HOH HOH . H 5 HOH A 26 4140 50 HOH HOH . H 5 HOH A 27 4141 51 HOH HOH . H 5 HOH A 28 4142 53 HOH HOH . H 5 HOH A 29 4143 54 HOH HOH . H 5 HOH A 30 4144 55 HOH HOH . H 5 HOH A 31 4145 56 HOH HOH . H 5 HOH A 32 4146 58 HOH HOH . H 5 HOH A 33 4147 59 HOH HOH . H 5 HOH A 34 4148 60 HOH HOH . H 5 HOH A 35 4149 61 HOH HOH . H 5 HOH A 36 4150 62 HOH HOH . H 5 HOH A 37 4151 64 HOH HOH . H 5 HOH A 38 4152 65 HOH HOH . H 5 HOH A 39 4153 66 HOH HOH . H 5 HOH A 40 4154 77 HOH HOH . H 5 HOH A 41 4155 79 HOH HOH . H 5 HOH A 42 4156 80 HOH HOH . H 5 HOH A 43 4157 81 HOH HOH . H 5 HOH A 44 4158 83 HOH HOH . H 5 HOH A 45 4159 87 HOH HOH . H 5 HOH A 46 4160 88 HOH HOH . H 5 HOH A 47 4161 90 HOH HOH . H 5 HOH A 48 4162 91 HOH HOH . H 5 HOH A 49 4163 92 HOH HOH . H 5 HOH A 50 4164 93 HOH HOH . H 5 HOH A 51 4165 94 HOH HOH . H 5 HOH A 52 4166 96 HOH HOH . H 5 HOH A 53 4167 97 HOH HOH . H 5 HOH A 54 4168 101 HOH HOH . H 5 HOH A 55 4169 102 HOH HOH . H 5 HOH A 56 4170 104 HOH HOH . H 5 HOH A 57 4171 106 HOH HOH . H 5 HOH A 58 4172 108 HOH HOH . H 5 HOH A 59 4173 111 HOH HOH . H 5 HOH A 60 4174 114 HOH HOH . H 5 HOH A 61 4175 116 HOH HOH . H 5 HOH A 62 4176 118 HOH HOH . H 5 HOH A 63 4177 119 HOH HOH . H 5 HOH A 64 4178 120 HOH HOH . H 5 HOH A 65 4179 122 HOH HOH . H 5 HOH A 66 4180 124 HOH HOH . H 5 HOH A 67 4181 125 HOH HOH . H 5 HOH A 68 4182 128 HOH HOH . H 5 HOH A 69 4183 129 HOH HOH . H 5 HOH A 70 4184 130 HOH HOH . H 5 HOH A 71 4185 132 HOH HOH . H 5 HOH A 72 4186 133 HOH HOH . H 5 HOH A 73 4187 135 HOH HOH . H 5 HOH A 74 4188 136 HOH HOH . H 5 HOH A 75 4189 138 HOH HOH . H 5 HOH A 76 4190 141 HOH HOH . H 5 HOH A 77 4191 142 HOH HOH . H 5 HOH A 78 4192 143 HOH HOH . H 5 HOH A 79 4193 144 HOH HOH . H 5 HOH A 80 4194 149 HOH HOH . H 5 HOH A 81 4195 150 HOH HOH . H 5 HOH A 82 4196 151 HOH HOH . H 5 HOH A 83 4197 153 HOH HOH . H 5 HOH A 84 4198 156 HOH HOH . H 5 HOH A 85 4199 157 HOH HOH . H 5 HOH A 86 4200 160 HOH HOH . H 5 HOH A 87 4201 161 HOH HOH . H 5 HOH A 88 4202 162 HOH HOH . H 5 HOH A 89 4203 163 HOH HOH . H 5 HOH A 90 4204 164 HOH HOH . H 5 HOH A 91 4205 166 HOH HOH . H 5 HOH A 92 4206 173 HOH HOH . H 5 HOH A 93 4207 175 HOH HOH . H 5 HOH A 94 4208 179 HOH HOH . H 5 HOH A 95 4209 180 HOH HOH . H 5 HOH A 96 4210 182 HOH HOH . H 5 HOH A 97 4211 184 HOH HOH . H 5 HOH A 98 4212 187 HOH HOH . H 5 HOH A 99 4213 188 HOH HOH . H 5 HOH A 100 4214 199 HOH HOH . H 5 HOH A 101 4215 200 HOH HOH . H 5 HOH A 102 4216 205 HOH HOH . H 5 HOH A 103 4217 206 HOH HOH . H 5 HOH A 104 4218 207 HOH HOH . H 5 HOH A 105 4219 209 HOH HOH . H 5 HOH A 106 4220 210 HOH HOH . H 5 HOH A 107 4221 211 HOH HOH . H 5 HOH A 108 4222 213 HOH HOH . H 5 HOH A 109 4223 214 HOH HOH . H 5 HOH A 110 4224 215 HOH HOH . H 5 HOH A 111 4225 217 HOH HOH . H 5 HOH A 112 4226 110 HOH HOH . I 5 HOH B 1 4190 140 HOH HOH . I 5 HOH B 2 4191 1 HOH HOH . I 5 HOH B 3 4192 3 HOH HOH . I 5 HOH B 4 4193 4 HOH HOH . I 5 HOH B 5 4194 6 HOH HOH . I 5 HOH B 6 4195 9 HOH HOH . I 5 HOH B 7 4196 11 HOH HOH . I 5 HOH B 8 4197 13 HOH HOH . I 5 HOH B 9 4198 15 HOH HOH . I 5 HOH B 10 4199 16 HOH HOH . I 5 HOH B 11 4200 17 HOH HOH . I 5 HOH B 12 4201 19 HOH HOH . I 5 HOH B 13 4202 21 HOH HOH . I 5 HOH B 14 4203 23 HOH HOH . I 5 HOH B 15 4204 25 HOH HOH . I 5 HOH B 16 4205 26 HOH HOH . I 5 HOH B 17 4206 30 HOH HOH . I 5 HOH B 18 4207 31 HOH HOH . I 5 HOH B 19 4208 32 HOH HOH . I 5 HOH B 20 4209 33 HOH HOH . I 5 HOH B 21 4210 36 HOH HOH . I 5 HOH B 22 4211 42 HOH HOH . I 5 HOH B 23 4212 46 HOH HOH . I 5 HOH B 24 4213 47 HOH HOH . I 5 HOH B 25 4214 49 HOH HOH . I 5 HOH B 26 4215 52 HOH HOH . I 5 HOH B 27 4216 57 HOH HOH . I 5 HOH B 28 4217 63 HOH HOH . I 5 HOH B 29 4218 67 HOH HOH . I 5 HOH B 30 4219 68 HOH HOH . I 5 HOH B 31 4220 69 HOH HOH . I 5 HOH B 32 4221 70 HOH HOH . I 5 HOH B 33 4222 71 HOH HOH . I 5 HOH B 34 4223 72 HOH HOH . I 5 HOH B 35 4224 73 HOH HOH . I 5 HOH B 36 4225 74 HOH HOH . I 5 HOH B 37 4226 75 HOH HOH . I 5 HOH B 38 4227 76 HOH HOH . I 5 HOH B 39 4228 78 HOH HOH . I 5 HOH B 40 4229 82 HOH HOH . I 5 HOH B 41 4230 84 HOH HOH . I 5 HOH B 42 4231 85 HOH HOH . I 5 HOH B 43 4232 86 HOH HOH . I 5 HOH B 44 4233 89 HOH HOH . I 5 HOH B 45 4234 95 HOH HOH . I 5 HOH B 46 4235 98 HOH HOH . I 5 HOH B 47 4236 99 HOH HOH . I 5 HOH B 48 4237 100 HOH HOH . I 5 HOH B 49 4238 103 HOH HOH . I 5 HOH B 50 4239 105 HOH HOH . I 5 HOH B 51 4240 107 HOH HOH . I 5 HOH B 52 4241 109 HOH HOH . I 5 HOH B 53 4242 112 HOH HOH . I 5 HOH B 54 4243 113 HOH HOH . I 5 HOH B 55 4244 115 HOH HOH . I 5 HOH B 56 4245 117 HOH HOH . I 5 HOH B 57 4246 121 HOH HOH . I 5 HOH B 58 4247 123 HOH HOH . I 5 HOH B 59 4248 126 HOH HOH . I 5 HOH B 60 4249 127 HOH HOH . I 5 HOH B 61 4250 131 HOH HOH . I 5 HOH B 62 4251 134 HOH HOH . I 5 HOH B 63 4252 137 HOH HOH . I 5 HOH B 64 4253 139 HOH HOH . I 5 HOH B 65 4254 145 HOH HOH . I 5 HOH B 66 4255 146 HOH HOH . I 5 HOH B 67 4256 147 HOH HOH . I 5 HOH B 68 4257 148 HOH HOH . I 5 HOH B 69 4258 152 HOH HOH . I 5 HOH B 70 4259 154 HOH HOH . I 5 HOH B 71 4260 155 HOH HOH . I 5 HOH B 72 4261 158 HOH HOH . I 5 HOH B 73 4262 159 HOH HOH . I 5 HOH B 74 4263 165 HOH HOH . I 5 HOH B 75 4264 167 HOH HOH . I 5 HOH B 76 4265 168 HOH HOH . I 5 HOH B 77 4266 169 HOH HOH . I 5 HOH B 78 4267 170 HOH HOH . I 5 HOH B 79 4268 171 HOH HOH . I 5 HOH B 80 4269 172 HOH HOH . I 5 HOH B 81 4270 174 HOH HOH . I 5 HOH B 82 4271 176 HOH HOH . I 5 HOH B 83 4272 177 HOH HOH . I 5 HOH B 84 4273 178 HOH HOH . I 5 HOH B 85 4274 181 HOH HOH . I 5 HOH B 86 4275 183 HOH HOH . I 5 HOH B 87 4276 185 HOH HOH . I 5 HOH B 88 4277 186 HOH HOH . I 5 HOH B 89 4278 189 HOH HOH . I 5 HOH B 90 4279 190 HOH HOH . I 5 HOH B 91 4280 191 HOH HOH . I 5 HOH B 92 4281 192 HOH HOH . I 5 HOH B 93 4282 193 HOH HOH . I 5 HOH B 94 4283 194 HOH HOH . I 5 HOH B 95 4284 195 HOH HOH . I 5 HOH B 96 4285 196 HOH HOH . I 5 HOH B 97 4286 197 HOH HOH . I 5 HOH B 98 4287 198 HOH HOH . I 5 HOH B 99 4288 201 HOH HOH . I 5 HOH B 100 4289 202 HOH HOH . I 5 HOH B 101 4290 203 HOH HOH . I 5 HOH B 102 4291 204 HOH HOH . I 5 HOH B 103 4292 208 HOH HOH . I 5 HOH B 104 4293 212 HOH HOH . I 5 HOH B 105 4294 216 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -19.331 _atom_site.Cartn_y 39.124 _atom_site.Cartn_z 37.843 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 4113 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 1180 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #