data_2R61 # _model_server_result.job_id MtM7Q7DYZF-tLnfsbczZRw _model_server_result.datetime_utc '2024-11-26 00:48:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r61 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":206}' # _entry.id 2R61 # _exptl.entry_id 2R61 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.087 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S,R MESO-TARTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2R61 _cell.length_a 52.223 _cell.length_b 52.223 _cell.length_c 236.657 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R61 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GAL NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 SIA GAL C2 O2 . O3 HO3 . sing 3 ? 2 4 1 FUC NAG C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG X 603 NAG 2 n B GAL 2 B 2 GAL X 602 GAL 2 n B SIA 3 B 3 SIA X 601 SIA 2 n B FUC 4 B 4 FUC X 604 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 NAG . B NAG 1 1_555 B C1 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 B O3 NAG . B NAG 1 1_555 B C1 FUC . B FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 B O3 GAL . B GAL 2 1_555 B C2 SIA . B SIA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? # _chem_comp.formula 'C4 H6 O6' _chem_comp.formula_weight 150.087 _chem_comp.id SRT _chem_comp.mon_nstd_flag . _chem_comp.name 'S,R MESO-TARTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 SRT sing 407 n n O1 H1 SRT sing 408 n n O11 C1 SRT doub 409 n n C1 C2 SRT sing 410 n n C2 O2 SRT sing 411 n n C2 C3 SRT sing 412 n n C2 H2 SRT sing 413 n n O2 HA SRT sing 414 n n C3 O3 SRT sing 415 n n C3 C4 SRT sing 416 n n C3 H3 SRT sing 417 n n O3 HB SRT sing 418 n n C4 O4 SRT doub 419 n n C4 O41 SRT sing 420 n n O41 H41 SRT sing 421 n n # _atom_sites.entry_id 2R61 _atom_sites.fract_transf_matrix[1][1] 0.019149 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL A 1 205 205 CL CL . D 4 SRT A 1 206 206 SRT SRT . E 5 GOL A 1 207 207 GOL GOL . F 6 HOH A 1 605 208 HOH HOH . F 6 HOH A 2 606 209 HOH HOH . F 6 HOH A 3 607 210 HOH HOH . F 6 HOH A 4 608 211 HOH HOH . F 6 HOH A 5 609 212 HOH HOH . F 6 HOH A 6 610 213 HOH HOH . F 6 HOH A 7 611 214 HOH HOH . F 6 HOH A 8 612 215 HOH HOH . F 6 HOH A 9 613 216 HOH HOH . F 6 HOH A 10 614 217 HOH HOH . F 6 HOH A 11 615 218 HOH HOH . F 6 HOH A 12 616 219 HOH HOH . F 6 HOH A 13 617 220 HOH HOH . F 6 HOH A 14 618 221 HOH HOH . F 6 HOH A 15 619 222 HOH HOH . F 6 HOH A 16 620 223 HOH HOH . F 6 HOH A 17 621 224 HOH HOH . F 6 HOH A 18 622 225 HOH HOH . F 6 HOH A 19 623 226 HOH HOH . F 6 HOH A 20 624 227 HOH HOH . F 6 HOH A 21 625 228 HOH HOH . F 6 HOH A 22 626 229 HOH HOH . F 6 HOH A 23 627 230 HOH HOH . F 6 HOH A 24 628 231 HOH HOH . F 6 HOH A 25 629 232 HOH HOH . F 6 HOH A 26 630 233 HOH HOH . F 6 HOH A 27 631 234 HOH HOH . F 6 HOH A 28 632 235 HOH HOH . F 6 HOH A 29 633 236 HOH HOH . F 6 HOH A 30 634 237 HOH HOH . F 6 HOH A 31 635 238 HOH HOH . F 6 HOH A 32 636 239 HOH HOH . F 6 HOH A 33 637 240 HOH HOH . F 6 HOH A 34 638 241 HOH HOH . F 6 HOH A 35 639 242 HOH HOH . F 6 HOH A 36 640 243 HOH HOH . F 6 HOH A 37 641 244 HOH HOH . F 6 HOH A 38 642 245 HOH HOH . F 6 HOH A 39 643 246 HOH HOH . F 6 HOH A 40 644 247 HOH HOH . F 6 HOH A 41 645 248 HOH HOH . F 6 HOH A 42 646 249 HOH HOH . F 6 HOH A 43 647 250 HOH HOH . F 6 HOH A 44 648 251 HOH HOH . F 6 HOH A 45 649 252 HOH HOH . F 6 HOH A 46 650 253 HOH HOH . F 6 HOH A 47 651 254 HOH HOH . F 6 HOH A 48 652 255 HOH HOH . F 6 HOH A 49 653 256 HOH HOH . F 6 HOH A 50 654 257 HOH HOH . F 6 HOH A 51 655 258 HOH HOH . F 6 HOH A 52 656 259 HOH HOH . F 6 HOH A 53 657 260 HOH HOH . F 6 HOH A 54 658 261 HOH HOH . F 6 HOH A 55 659 262 HOH HOH . F 6 HOH A 56 660 263 HOH HOH . F 6 HOH A 57 661 13 HOH HOH . F 6 HOH A 58 662 115 HOH HOH . F 6 HOH A 59 663 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 SRT . . . D 4 19.458 -14.252 13.025 1 72.47 ? O1 SRT 206 A 1 HETATM 2 O O11 SRT . . . D 4 20.346 -12.708 11.736 1 67.88 ? O11 SRT 206 A 1 HETATM 3 C C1 SRT . . . D 4 20.402 -13.815 12.325 1 72.25 ? C1 SRT 206 A 1 HETATM 4 C C2 SRT . . . D 4 21.665 -14.634 12.204 1 74.44 ? C2 SRT 206 A 1 HETATM 5 O O2 SRT . . . D 4 22.756 -13.892 12.766 1 74.72 ? O2 SRT 206 A 1 HETATM 6 C C3 SRT . . . D 4 21.655 -15.967 12.974 1 77.1 ? C3 SRT 206 A 1 HETATM 7 O O3 SRT . . . D 4 20.319 -16.515 13.1 1 79.13 ? O3 SRT 206 A 1 HETATM 8 C C4 SRT . . . D 4 22.63 -16.952 12.339 1 76.78 ? C4 SRT 206 A 1 HETATM 9 O O4 SRT . . . D 4 23.451 -16.553 11.466 1 75.45 ? O4 SRT 206 A 1 HETATM 10 O O41 SRT . . . D 4 22.6 -18.148 12.725 1 75.62 ? O41 SRT 206 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #