data_2R61
#
_model_server_result.job_id            oS_xvwDapSCMK5OSHDG0pQ 
_model_server_result.datetime_utc      '2025-02-18 09:00:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2r61 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":207}' 
#
_entry.id    2R61 
#
_exptl.entry_id    2R61 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2R61 
_cell.length_a            52.223 
_cell.length_b            52.223 
_cell.length_c            236.657 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2R61 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 GAL NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 SIA GAL C2 O2 . O3 HO3 . sing 
3 ? 2 4 1 FUC NAG C1 O1 . O3 HO3 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG X 603 NAG 
2 n B GAL 2 B 2 GAL X 602 GAL 
2 n B SIA 3 B 3 SIA X 601 SIA 
2 n B FUC 4 B 4 FUC X 604 FUC 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B O4 NAG . B NAG 1 1_555 B C1 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale2 B O3 NAG . B NAG 1 1_555 B C1 FUC . B FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale3 B O3 GAL . B GAL 2 1_555 B C2 SIA . B SIA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 163 n n 
C1 C2 GOL sing 164 n n 
C1 H11 GOL sing 165 n n 
C1 H12 GOL sing 166 n n 
O1 HO1 GOL sing 167 n n 
C2 O2 GOL sing 168 n n 
C2 C3 GOL sing 169 n n 
C2 H2 GOL sing 170 n n 
O2 HO2 GOL sing 171 n n 
C3 O3 GOL sing 172 n n 
C3 H31 GOL sing 173 n n 
C3 H32 GOL sing 174 n n 
O3 HO3 GOL sing 175 n n 
#
_atom_sites.entry_id                     2R61 
_atom_sites.fract_transf_matrix[1][1]    0.019149 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019149 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004226 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CL A 1 205 205 CL CL . 
D 4 SRT A 1 206 206 SRT SRT . 
E 5 GOL A 1 207 207 GOL GOL . 
F 6 HOH A 1 605 208 HOH HOH . 
F 6 HOH A 2 606 209 HOH HOH . 
F 6 HOH A 3 607 210 HOH HOH . 
F 6 HOH A 4 608 211 HOH HOH . 
F 6 HOH A 5 609 212 HOH HOH . 
F 6 HOH A 6 610 213 HOH HOH . 
F 6 HOH A 7 611 214 HOH HOH . 
F 6 HOH A 8 612 215 HOH HOH . 
F 6 HOH A 9 613 216 HOH HOH . 
F 6 HOH A 10 614 217 HOH HOH . 
F 6 HOH A 11 615 218 HOH HOH . 
F 6 HOH A 12 616 219 HOH HOH . 
F 6 HOH A 13 617 220 HOH HOH . 
F 6 HOH A 14 618 221 HOH HOH . 
F 6 HOH A 15 619 222 HOH HOH . 
F 6 HOH A 16 620 223 HOH HOH . 
F 6 HOH A 17 621 224 HOH HOH . 
F 6 HOH A 18 622 225 HOH HOH . 
F 6 HOH A 19 623 226 HOH HOH . 
F 6 HOH A 20 624 227 HOH HOH . 
F 6 HOH A 21 625 228 HOH HOH . 
F 6 HOH A 22 626 229 HOH HOH . 
F 6 HOH A 23 627 230 HOH HOH . 
F 6 HOH A 24 628 231 HOH HOH . 
F 6 HOH A 25 629 232 HOH HOH . 
F 6 HOH A 26 630 233 HOH HOH . 
F 6 HOH A 27 631 234 HOH HOH . 
F 6 HOH A 28 632 235 HOH HOH . 
F 6 HOH A 29 633 236 HOH HOH . 
F 6 HOH A 30 634 237 HOH HOH . 
F 6 HOH A 31 635 238 HOH HOH . 
F 6 HOH A 32 636 239 HOH HOH . 
F 6 HOH A 33 637 240 HOH HOH . 
F 6 HOH A 34 638 241 HOH HOH . 
F 6 HOH A 35 639 242 HOH HOH . 
F 6 HOH A 36 640 243 HOH HOH . 
F 6 HOH A 37 641 244 HOH HOH . 
F 6 HOH A 38 642 245 HOH HOH . 
F 6 HOH A 39 643 246 HOH HOH . 
F 6 HOH A 40 644 247 HOH HOH . 
F 6 HOH A 41 645 248 HOH HOH . 
F 6 HOH A 42 646 249 HOH HOH . 
F 6 HOH A 43 647 250 HOH HOH . 
F 6 HOH A 44 648 251 HOH HOH . 
F 6 HOH A 45 649 252 HOH HOH . 
F 6 HOH A 46 650 253 HOH HOH . 
F 6 HOH A 47 651 254 HOH HOH . 
F 6 HOH A 48 652 255 HOH HOH . 
F 6 HOH A 49 653 256 HOH HOH . 
F 6 HOH A 50 654 257 HOH HOH . 
F 6 HOH A 51 655 258 HOH HOH . 
F 6 HOH A 52 656 259 HOH HOH . 
F 6 HOH A 53 657 260 HOH HOH . 
F 6 HOH A 54 658 261 HOH HOH . 
F 6 HOH A 55 659 262 HOH HOH . 
F 6 HOH A 56 660 263 HOH HOH . 
F 6 HOH A 57 661 13 HOH HOH . 
F 6 HOH A 58 662 115 HOH HOH . 
F 6 HOH A 59 663 116 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 5 15.162 2.795 51.696 1 65 ? C1 GOL 207 A 1 
HETATM 2 O O1 GOL . . . E 5 15.351 3.663 50.598 1 63.74 ? O1 GOL 207 A 1 
HETATM 3 C C2 GOL . . . E 5 14.239 1.651 51.277 1 64.56 ? C2 GOL 207 A 1 
HETATM 4 O O2 GOL . . . E 5 12.955 1.855 51.842 1 62.69 ? O2 GOL 207 A 1 
HETATM 5 C C3 GOL . . . E 5 14.893 0.286 51.591 1 64.55 ? C3 GOL 207 A 1 
HETATM 6 O O3 GOL . . . E 5 13.974 -0.644 52.139 1 63.27 ? O3 GOL 207 A 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#