data_2R6G # _model_server_result.job_id '_Gpx2UoD_vJolpeX346QVg' _model_server_result.datetime_utc '2024-11-13 21:38:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r6g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1001}' # _entry.id 2R6G # _exptl.entry_id 2R6G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 87.13 _cell.angle_beta 82.43 _cell.angle_gamma 75.75 _cell.entry_id 2R6G _cell.length_a 73.26 _cell.length_b 95.86 _cell.length_c 109.99 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R6G _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n F GLC 1 C 1 GLC X 3001 MAL 5 n F GLC 2 C 2 GLC X 3001 MAL # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id F _struct_conn.ptnr1_label_atom_id O4 _struct_conn.ptnr1_label_comp_id GLC _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id GLC _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id GLC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id GLC _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.434 _struct_conn.pdbx_value_order sing # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 2R6G _atom_sites.fract_transf_matrix[1][1] 0.01365 _atom_sites.fract_transf_matrix[1][2] -0.003467 _atom_sites.fract_transf_matrix[1][3] -0.001751 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010763 _atom_sites.fract_transf_matrix[2][3] -0.000198 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009173 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 6 ATP A 1 1002 1002 ATP ATP . H 6 ATP B 1 1001 1001 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . H 6 1.525 14.587 8.526 1 64.5 ? PG ATP 1001 B 1 HETATM 2 O O1G ATP . . . H 6 2.274 14.543 9.835 1 63.61 ? O1G ATP 1001 B 1 HETATM 3 O O2G ATP . . . H 6 2.266 13.971 7.362 1 64.17 ? O2G ATP 1001 B 1 HETATM 4 O O3G ATP . . . H 6 0.092 14.137 8.638 1 63.93 ? O3G ATP 1001 B 1 HETATM 5 P PB ATP . . . H 6 2.674 17.151 8.05 1 65.64 ? PB ATP 1001 B 1 HETATM 6 O O1B ATP . . . H 6 3.407 17.09 9.36 1 65.84 ? O1B ATP 1001 B 1 HETATM 7 O O2B ATP . . . H 6 3.442 16.913 6.775 1 65.3 ? O2B ATP 1001 B 1 HETATM 8 O O3B ATP . . . H 6 1.398 16.157 8.134 1 65.26 ? O3B ATP 1001 B 1 HETATM 9 P PA ATP . . . H 6 1.784 19.575 9.208 1 67.02 ? PA ATP 1001 B 1 HETATM 10 O O1A ATP . . . H 6 0.704 18.995 10.091 1 67.18 ? O1A ATP 1001 B 1 HETATM 11 O O2A ATP . . . H 6 1.598 20.957 8.646 1 67.28 ? O2A ATP 1001 B 1 HETATM 12 O O3A ATP . . . H 6 1.992 18.599 7.938 1 66.39 ? O3A ATP 1001 B 1 HETATM 13 O O5' ATP . . . H 6 3.173 19.595 10.017 1 66.46 ? O5' ATP 1001 B 1 HETATM 14 C C5' ATP . . . H 6 3.39 20.685 10.907 1 66.75 ? C5' ATP 1001 B 1 HETATM 15 C C4' ATP . . . H 6 4.726 20.594 11.635 1 66.79 ? C4' ATP 1001 B 1 HETATM 16 O O4' ATP . . . H 6 4.892 21.783 12.409 1 66.85 ? O4' ATP 1001 B 1 HETATM 17 C C3' ATP . . . H 6 4.783 19.436 12.614 1 66.94 ? C3' ATP 1001 B 1 HETATM 18 O O3' ATP . . . H 6 6.101 18.885 12.573 1 67.01 ? O3' ATP 1001 B 1 HETATM 19 C C2' ATP . . . H 6 4.501 20.038 13.978 1 66.79 ? C2' ATP 1001 B 1 HETATM 20 O O2' ATP . . . H 6 5.391 19.518 14.969 1 66.74 ? O2' ATP 1001 B 1 HETATM 21 C C1' ATP . . . H 6 4.727 21.531 13.809 1 67.01 ? C1' ATP 1001 B 1 HETATM 22 N N9 ATP . . . H 6 3.577 22.315 14.33 1 67.11 ? N9 ATP 1001 B 1 HETATM 23 C C8 ATP . . . H 6 2.307 22.292 13.873 1 67.07 ? C8 ATP 1001 B 1 HETATM 24 N N7 ATP . . . H 6 1.511 23.139 14.576 1 66.74 ? N7 ATP 1001 B 1 HETATM 25 C C5 ATP . . . H 6 2.284 23.728 15.504 1 66.9 ? C5 ATP 1001 B 1 HETATM 26 C C6 ATP . . . H 6 2.089 24.73 16.579 1 67.09 ? C6 ATP 1001 B 1 HETATM 27 N N6 ATP . . . H 6 0.869 25.277 16.799 1 67.19 ? N6 ATP 1001 B 1 HETATM 28 N N1 ATP . . . H 6 3.167 25.073 17.33 1 67.15 ? N1 ATP 1001 B 1 HETATM 29 C C2 ATP . . . H 6 4.387 24.535 17.125 1 66.99 ? C2 ATP 1001 B 1 HETATM 30 N N3 ATP . . . H 6 4.636 23.621 16.166 1 67.08 ? N3 ATP 1001 B 1 HETATM 31 C C4 ATP . . . H 6 3.645 23.184 15.341 1 67.14 ? C4 ATP 1001 B 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #