data_2R6G # _model_server_result.job_id pKKRbcwDKwAmtolIIYSfbg _model_server_result.datetime_utc '2024-11-13 21:30:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r6g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1002}' # _entry.id 2R6G # _exptl.entry_id 2R6G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 87.13 _cell.angle_beta 82.43 _cell.angle_gamma 75.75 _cell.entry_id 2R6G _cell.length_a 73.26 _cell.length_b 95.86 _cell.length_c 109.99 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R6G _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n F GLC 1 C 1 GLC X 3001 MAL 5 n F GLC 2 C 2 GLC X 3001 MAL # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id F _struct_conn.ptnr1_label_atom_id O4 _struct_conn.ptnr1_label_comp_id GLC _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id GLC _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id GLC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id GLC _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.434 _struct_conn.pdbx_value_order sing # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 2R6G _atom_sites.fract_transf_matrix[1][1] 0.01365 _atom_sites.fract_transf_matrix[1][2] -0.003467 _atom_sites.fract_transf_matrix[1][3] -0.001751 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010763 _atom_sites.fract_transf_matrix[2][3] -0.000198 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009173 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 6 ATP A 1 1002 1002 ATP ATP . H 6 ATP B 1 1001 1001 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 6 -13.949 2.279 8.085 1 58.28 ? PG ATP 1002 A 1 HETATM 2 O O1G ATP . . . G 6 -15.091 2.304 7.105 1 58.11 ? O1G ATP 1002 A 1 HETATM 3 O O2G ATP . . . G 6 -12.757 1.502 7.582 1 58.62 ? O2G ATP 1002 A 1 HETATM 4 O O3G ATP . . . G 6 -13.616 3.629 8.659 1 58.42 ? O3G ATP 1002 A 1 HETATM 5 P PB ATP . . . G 6 -15.682 0.415 9.344 1 59.14 ? PB ATP 1002 A 1 HETATM 6 O O1B ATP . . . G 6 -16.84 1.068 8.645 1 60.03 ? O1B ATP 1002 A 1 HETATM 7 O O2B ATP . . . G 6 -15.174 -0.899 8.815 1 59.39 ? O2B ATP 1002 A 1 HETATM 8 O O3B ATP . . . G 6 -14.459 1.468 9.394 1 59.02 ? O3B ATP 1002 A 1 HETATM 9 P PA ATP . . . G 6 -17.401 0.935 11.509 1 61.2 ? PA ATP 1002 A 1 HETATM 10 O O1A ATP . . . G 6 -17.263 2.43 11.422 1 60.7 ? O1A ATP 1002 A 1 HETATM 11 O O2A ATP . . . G 6 -17.628 0.319 12.865 1 61.56 ? O2A ATP 1002 A 1 HETATM 12 O O3A ATP . . . G 6 -16.086 0.236 10.885 1 60.03 ? O3A ATP 1002 A 1 HETATM 13 O O5' ATP . . . G 6 -18.625 0.481 10.565 1 61.56 ? O5' ATP 1002 A 1 HETATM 14 C C5' ATP . . . G 6 -19.953 0.728 11.015 1 62.73 ? C5' ATP 1002 A 1 HETATM 15 C C4' ATP . . . G 6 -20.929 0.794 9.847 1 64.06 ? C4' ATP 1002 A 1 HETATM 16 O O4' ATP . . . G 6 -22.264 0.893 10.352 1 64.89 ? O4' ATP 1002 A 1 HETATM 17 C C3' ATP . . . G 6 -20.703 1.997 8.951 1 64.48 ? C3' ATP 1002 A 1 HETATM 18 O O3' ATP . . . G 6 -20.738 1.561 7.592 1 64.28 ? O3' ATP 1002 A 1 HETATM 19 C C2' ATP . . . G 6 -21.855 2.946 9.222 1 64.77 ? C2' ATP 1002 A 1 HETATM 20 O O2' ATP . . . G 6 -22.476 3.371 8.008 1 64.65 ? O2' ATP 1002 A 1 HETATM 21 C C1' ATP . . . G 6 -22.842 2.169 10.075 1 65.17 ? C1' ATP 1002 A 1 HETATM 22 N N9 ATP . . . G 6 -23.054 2.901 11.344 1 65.46 ? N9 ATP 1002 A 1 HETATM 23 C C8 ATP . . . G 6 -22.098 3.273 12.225 1 65.54 ? C8 ATP 1002 A 1 HETATM 24 N N7 ATP . . . G 6 -22.632 3.935 13.283 1 65.52 ? N7 ATP 1002 A 1 HETATM 25 C C5 ATP . . . G 6 -23.962 3.99 13.082 1 65.39 ? C5 ATP 1002 A 1 HETATM 26 C C6 ATP . . . G 6 -25.128 4.543 13.809 1 65.41 ? C6 ATP 1002 A 1 HETATM 27 N N6 ATP . . . G 6 -24.964 5.185 14.992 1 65.58 ? N6 ATP 1002 A 1 HETATM 28 N N1 ATP . . . G 6 -26.354 4.386 13.25 1 65.52 ? N1 ATP 1002 A 1 HETATM 29 C C2 ATP . . . G 6 -26.532 3.749 12.072 1 65.47 ? C2 ATP 1002 A 1 HETATM 30 N N3 ATP . . . G 6 -25.518 3.221 11.358 1 65.53 ? N3 ATP 1002 A 1 HETATM 31 C C4 ATP . . . G 6 -24.237 3.307 11.804 1 65.51 ? C4 ATP 1002 A 1 # _model_server_stats.io_time_ms 122 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #