data_2R6T # _model_server_result.job_id f2PgVsoeD8O8_BmSKMP5_g _model_server_result.datetime_utc '2024-11-24 03:09:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r6t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":995}' # _entry.id 2R6T # _exptl.entry_id 2R6T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2R6T _cell.length_a 64.678 _cell.length_b 64.678 _cell.length_c 169.197 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R6T _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1,2,3 B,F,G,H,J 2 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 64.678 0 0 5 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 32.339 56.012791 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D MG MG . A MG 993 1_555 E O1B ATP . A ATP 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc2 D MG MG . A MG 993 1_555 E O3G ATP . A ATP 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc3 D MG MG . A MG 993 1_555 E O1A ATP . A ATP 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc4 D MG MG . A MG 993 1_555 I O HOH . A HOH 1045 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc5 F MG MG . B MG 994 1_555 H O1A ATP . B ATP 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc6 F MG MG . B MG 994 1_555 H O1B ATP . B ATP 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc7 F MG MG . B MG 994 1_555 H O3G ATP . B ATP 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 2R6T _atom_sites.fract_transf_matrix[1][1] 0.015461 _atom_sites.fract_transf_matrix[1][2] 0.008927 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00591 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 994 994 MG MG . D 2 MG A 1 993 993 MG MG . E 3 ATP A 1 995 995 ATP ATP . F 2 MG B 1 994 994 MG MG . G 2 MG B 1 993 993 MG MG . H 3 ATP B 1 995 995 ATP ATP . I 4 HOH A 1 996 1 HOH HOH . I 4 HOH A 2 997 3 HOH HOH . I 4 HOH A 3 998 4 HOH HOH . I 4 HOH A 4 999 5 HOH HOH . I 4 HOH A 5 1000 8 HOH HOH . I 4 HOH A 6 1001 11 HOH HOH . I 4 HOH A 7 1002 13 HOH HOH . I 4 HOH A 8 1003 14 HOH HOH . I 4 HOH A 9 1004 15 HOH HOH . I 4 HOH A 10 1005 16 HOH HOH . I 4 HOH A 11 1006 17 HOH HOH . I 4 HOH A 12 1007 30 HOH HOH . I 4 HOH A 13 1008 31 HOH HOH . I 4 HOH A 14 1009 32 HOH HOH . I 4 HOH A 15 1010 33 HOH HOH . I 4 HOH A 16 1011 35 HOH HOH . I 4 HOH A 17 1012 36 HOH HOH . I 4 HOH A 18 1013 37 HOH HOH . I 4 HOH A 19 1014 38 HOH HOH . I 4 HOH A 20 1015 39 HOH HOH . I 4 HOH A 21 1016 40 HOH HOH . I 4 HOH A 22 1017 41 HOH HOH . I 4 HOH A 23 1018 42 HOH HOH . I 4 HOH A 24 1019 43 HOH HOH . I 4 HOH A 25 1020 44 HOH HOH . I 4 HOH A 26 1021 45 HOH HOH . I 4 HOH A 27 1022 46 HOH HOH . I 4 HOH A 28 1023 47 HOH HOH . I 4 HOH A 29 1024 48 HOH HOH . I 4 HOH A 30 1025 49 HOH HOH . I 4 HOH A 31 1026 50 HOH HOH . I 4 HOH A 32 1027 51 HOH HOH . I 4 HOH A 33 1028 52 HOH HOH . I 4 HOH A 34 1029 53 HOH HOH . I 4 HOH A 35 1030 54 HOH HOH . I 4 HOH A 36 1031 55 HOH HOH . I 4 HOH A 37 1032 56 HOH HOH . I 4 HOH A 38 1033 57 HOH HOH . I 4 HOH A 39 1034 58 HOH HOH . I 4 HOH A 40 1035 59 HOH HOH . I 4 HOH A 41 1036 60 HOH HOH . I 4 HOH A 42 1037 61 HOH HOH . I 4 HOH A 43 1038 62 HOH HOH . I 4 HOH A 44 1039 63 HOH HOH . I 4 HOH A 45 1040 64 HOH HOH . I 4 HOH A 46 1041 65 HOH HOH . I 4 HOH A 47 1042 66 HOH HOH . I 4 HOH A 48 1043 67 HOH HOH . I 4 HOH A 49 1044 68 HOH HOH . I 4 HOH A 50 1045 91 HOH HOH . I 4 HOH A 51 1046 92 HOH HOH . I 4 HOH A 52 1047 93 HOH HOH . I 4 HOH A 53 1048 94 HOH HOH . I 4 HOH A 54 1049 95 HOH HOH . I 4 HOH A 55 1050 96 HOH HOH . I 4 HOH A 56 1051 97 HOH HOH . I 4 HOH A 57 1052 98 HOH HOH . I 4 HOH A 58 1053 99 HOH HOH . I 4 HOH A 59 1054 100 HOH HOH . I 4 HOH A 60 1055 101 HOH HOH . I 4 HOH A 61 1056 102 HOH HOH . I 4 HOH A 62 1057 103 HOH HOH . I 4 HOH A 63 1058 104 HOH HOH . I 4 HOH A 64 1059 105 HOH HOH . J 4 HOH B 1 996 2 HOH HOH . J 4 HOH B 2 997 6 HOH HOH . J 4 HOH B 3 998 7 HOH HOH . J 4 HOH B 4 999 9 HOH HOH . J 4 HOH B 5 1000 10 HOH HOH . J 4 HOH B 6 1001 12 HOH HOH . J 4 HOH B 7 1002 18 HOH HOH . J 4 HOH B 8 1003 19 HOH HOH . J 4 HOH B 9 1004 20 HOH HOH . J 4 HOH B 10 1005 21 HOH HOH . J 4 HOH B 11 1006 22 HOH HOH . J 4 HOH B 12 1007 23 HOH HOH . J 4 HOH B 13 1008 24 HOH HOH . J 4 HOH B 14 1009 25 HOH HOH . J 4 HOH B 15 1010 26 HOH HOH . J 4 HOH B 16 1011 27 HOH HOH . J 4 HOH B 17 1012 28 HOH HOH . J 4 HOH B 18 1013 29 HOH HOH . J 4 HOH B 19 1014 34 HOH HOH . J 4 HOH B 20 1015 69 HOH HOH . J 4 HOH B 21 1016 70 HOH HOH . J 4 HOH B 22 1017 71 HOH HOH . J 4 HOH B 23 1018 72 HOH HOH . J 4 HOH B 24 1019 73 HOH HOH . J 4 HOH B 25 1020 74 HOH HOH . J 4 HOH B 26 1021 75 HOH HOH . J 4 HOH B 27 1022 76 HOH HOH . J 4 HOH B 28 1023 77 HOH HOH . J 4 HOH B 29 1024 78 HOH HOH . J 4 HOH B 30 1025 79 HOH HOH . J 4 HOH B 31 1026 80 HOH HOH . J 4 HOH B 32 1027 81 HOH HOH . J 4 HOH B 33 1028 82 HOH HOH . J 4 HOH B 34 1029 83 HOH HOH . J 4 HOH B 35 1030 84 HOH HOH . J 4 HOH B 36 1031 85 HOH HOH . J 4 HOH B 37 1032 86 HOH HOH . J 4 HOH B 38 1033 87 HOH HOH . J 4 HOH B 39 1034 88 HOH HOH . J 4 HOH B 40 1035 89 HOH HOH . J 4 HOH B 41 1036 90 HOH HOH . J 4 HOH B 42 1037 106 HOH HOH . J 4 HOH B 43 1038 107 HOH HOH . J 4 HOH B 44 1039 108 HOH HOH . J 4 HOH B 45 1040 109 HOH HOH . J 4 HOH B 46 1041 110 HOH HOH . J 4 HOH B 47 1042 111 HOH HOH . J 4 HOH B 48 1043 112 HOH HOH . J 4 HOH B 49 1044 113 HOH HOH . J 4 HOH B 50 1045 114 HOH HOH . J 4 HOH B 51 1046 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . H 3 17.363 33.927 46.936 1 32.33 ? PG ATP 995 B 1 HETATM 2 O O1G ATP . . . H 3 16.127 34.502 46.301 1 32.03 ? O1G ATP 995 B 1 HETATM 3 O O2G ATP . . . H 3 18.015 34.812 47.966 1 28.99 ? O2G ATP 995 B 1 HETATM 4 O O3G ATP . . . H 3 18.349 33.397 45.915 1 34.26 ? O3G ATP 995 B 1 HETATM 5 P PB ATP . . . H 3 17.661 31.459 48.498 1 27.79 ? PB ATP 995 B 1 HETATM 6 O O1B ATP . . . H 3 19.13 31.785 48.429 1 23.72 ? O1B ATP 995 B 1 HETATM 7 O O2B ATP . . . H 3 17.053 31.273 49.863 1 28.35 ? O2B ATP 995 B 1 HETATM 8 O O3B ATP . . . H 3 16.792 32.598 47.702 1 29.81 ? O3B ATP 995 B 1 HETATM 9 P PA ATP . . . H 3 17.277 29.907 46.133 1 28.77 ? PA ATP 995 B 1 HETATM 10 O O1A ATP . . . H 3 18.538 30.574 45.645 1 28.93 ? O1A ATP 995 B 1 HETATM 11 O O2A ATP . . . H 3 15.959 30.337 45.535 1 28 ? O2A ATP 995 B 1 HETATM 12 O O3A ATP . . . H 3 17.294 30.078 47.741 1 27.91 ? O3A ATP 995 B 1 HETATM 13 O O5' ATP . . . H 3 17.425 28.293 45.981 1 29.64 ? O5' ATP 995 B 1 HETATM 14 C C5' ATP . . . H 3 16.301 27.413 45.81 1 29.35 ? C5' ATP 995 B 1 HETATM 15 C C4' ATP . . . H 3 16.177 26.372 46.931 1 28.48 ? C4' ATP 995 B 1 HETATM 16 O O4' ATP . . . H 3 17.379 25.616 46.966 1 27.19 ? O4' ATP 995 B 1 HETATM 17 C C3' ATP . . . H 3 15.971 26.928 48.347 1 29.01 ? C3' ATP 995 B 1 HETATM 18 O O3' ATP . . . H 3 14.647 26.729 48.853 1 30.81 ? O3' ATP 995 B 1 HETATM 19 C C2' ATP . . . H 3 16.967 26.199 49.241 1 28.46 ? C2' ATP 995 B 1 HETATM 20 O O2' ATP . . . H 3 16.391 25.182 50.068 1 29.1 ? O2' ATP 995 B 1 HETATM 21 C C1' ATP . . . H 3 17.938 25.544 48.289 1 27.21 ? C1' ATP 995 B 1 HETATM 22 N N9 ATP . . . H 3 19.225 26.286 48.289 1 26.95 ? N9 ATP 995 B 1 HETATM 23 C C8 ATP . . . H 3 19.392 27.625 48.358 1 26.46 ? C8 ATP 995 B 1 HETATM 24 N N7 ATP . . . H 3 20.699 27.966 48.315 1 25.85 ? N7 ATP 995 B 1 HETATM 25 C C5 ATP . . . H 3 21.388 26.818 48.206 1 25.65 ? C5 ATP 995 B 1 HETATM 26 C C6 ATP . . . H 3 22.81 26.46 48.109 1 25.66 ? C6 ATP 995 B 1 HETATM 27 N N6 ATP . . . H 3 23.768 27.421 48.122 1 25.29 ? N6 ATP 995 B 1 HETATM 28 N N1 ATP . . . H 3 23.094 25.132 48.037 1 27.39 ? N1 ATP 995 B 1 HETATM 29 C C2 ATP . . . H 3 22.159 24.154 48.04 1 26.54 ? C2 ATP 995 B 1 HETATM 30 N N3 ATP . . . H 3 20.842 24.423 48.111 1 26.48 ? N3 ATP 995 B 1 HETATM 31 C C4 ATP . . . H 3 20.417 25.712 48.193 1 25.99 ? C4 ATP 995 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #