data_2R6V
#
_model_server_result.job_id            IE03S57-bkKFxHbBPZ8AFg 
_model_server_result.datetime_utc      '2024-11-13 14:11:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2r6v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":175}' 
#
_entry.id    2R6V 
#
_exptl.entry_id    2R6V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2R6V 
_cell.length_a            46.2 
_cell.length_b            46.2 
_cell.length_c            267.59 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2R6V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 44.598333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 19 A GLY 0 1_555 A N MSE 20 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
covale ? covale2 A C MSE 20 A MSE 1 1_555 A N GLU 21 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C PRO 28 A PRO 9 1_555 A N MSE 29 A MSE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 A C MSE 29 A MSE 10 1_555 A N ARG 30 A ARG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? 
covale ? covale5 A C VAL 44 A VAL 25 1_555 A N MSE 45 A MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale6 A C MSE 45 A MSE 26 1_555 A N ALA 46 A ALA 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale7 A C GLU 107 A GLU 88 1_555 A N MSE 108 A MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale8 A C MSE 108 A MSE 89 1_555 A N SER 109 A SER 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     2R6V 
_atom_sites.fract_transf_matrix[1][1]    0.02165 
_atom_sites.fract_transf_matrix[1][2]    0.0125 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02499 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00374 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FMN A 1 173 1 FMN FMN . 
C 3 NCA A 1 174 2 NCA NCA . 
D 4 EDO A 1 175 3 EDO EDO . 
E 5 HOH A 1 176 4 HOH HOH . 
E 5 HOH A 2 177 5 HOH HOH . 
E 5 HOH A 3 178 6 HOH HOH . 
E 5 HOH A 4 179 7 HOH HOH . 
E 5 HOH A 5 180 8 HOH HOH . 
E 5 HOH A 6 181 9 HOH HOH . 
E 5 HOH A 7 182 10 HOH HOH . 
E 5 HOH A 8 183 11 HOH HOH . 
E 5 HOH A 9 184 12 HOH HOH . 
E 5 HOH A 10 185 13 HOH HOH . 
E 5 HOH A 11 186 14 HOH HOH . 
E 5 HOH A 12 187 15 HOH HOH . 
E 5 HOH A 13 188 16 HOH HOH . 
E 5 HOH A 14 189 17 HOH HOH . 
E 5 HOH A 15 190 18 HOH HOH . 
E 5 HOH A 16 191 19 HOH HOH . 
E 5 HOH A 17 192 20 HOH HOH . 
E 5 HOH A 18 193 21 HOH HOH . 
E 5 HOH A 19 194 22 HOH HOH . 
E 5 HOH A 20 195 23 HOH HOH . 
E 5 HOH A 21 196 24 HOH HOH . 
E 5 HOH A 22 197 25 HOH HOH . 
E 5 HOH A 23 198 26 HOH HOH . 
E 5 HOH A 24 199 27 HOH HOH . 
E 5 HOH A 25 200 28 HOH HOH . 
E 5 HOH A 26 201 29 HOH HOH . 
E 5 HOH A 27 202 30 HOH HOH . 
E 5 HOH A 28 203 31 HOH HOH . 
E 5 HOH A 29 204 32 HOH HOH . 
E 5 HOH A 30 205 33 HOH HOH . 
E 5 HOH A 31 206 34 HOH HOH . 
E 5 HOH A 32 207 35 HOH HOH . 
E 5 HOH A 33 208 36 HOH HOH . 
E 5 HOH A 34 209 37 HOH HOH . 
E 5 HOH A 35 210 38 HOH HOH . 
E 5 HOH A 36 211 39 HOH HOH . 
E 5 HOH A 37 212 40 HOH HOH . 
E 5 HOH A 38 213 41 HOH HOH . 
E 5 HOH A 39 214 42 HOH HOH . 
E 5 HOH A 40 215 43 HOH HOH . 
E 5 HOH A 41 216 44 HOH HOH . 
E 5 HOH A 42 217 45 HOH HOH . 
E 5 HOH A 43 218 46 HOH HOH . 
E 5 HOH A 44 219 47 HOH HOH . 
E 5 HOH A 45 220 48 HOH HOH . 
E 5 HOH A 46 221 49 HOH HOH . 
E 5 HOH A 47 222 50 HOH HOH . 
E 5 HOH A 48 223 51 HOH HOH . 
E 5 HOH A 49 224 52 HOH HOH . 
E 5 HOH A 50 225 53 HOH HOH . 
E 5 HOH A 51 226 54 HOH HOH . 
E 5 HOH A 52 227 55 HOH HOH . 
E 5 HOH A 53 228 56 HOH HOH . 
E 5 HOH A 54 229 57 HOH HOH . 
E 5 HOH A 55 230 58 HOH HOH . 
E 5 HOH A 56 231 59 HOH HOH . 
E 5 HOH A 57 232 60 HOH HOH . 
E 5 HOH A 58 233 61 HOH HOH . 
E 5 HOH A 59 234 62 HOH HOH . 
E 5 HOH A 60 235 63 HOH HOH . 
E 5 HOH A 61 236 64 HOH HOH . 
E 5 HOH A 62 237 65 HOH HOH . 
E 5 HOH A 63 238 66 HOH HOH . 
E 5 HOH A 64 239 67 HOH HOH . 
E 5 HOH A 65 240 68 HOH HOH . 
E 5 HOH A 66 241 69 HOH HOH . 
E 5 HOH A 67 242 70 HOH HOH . 
E 5 HOH A 68 243 71 HOH HOH . 
E 5 HOH A 69 244 72 HOH HOH . 
E 5 HOH A 70 245 73 HOH HOH . 
E 5 HOH A 71 246 74 HOH HOH . 
E 5 HOH A 72 247 75 HOH HOH . 
E 5 HOH A 73 248 76 HOH HOH . 
E 5 HOH A 74 249 77 HOH HOH . 
E 5 HOH A 75 250 78 HOH HOH . 
E 5 HOH A 76 251 79 HOH HOH . 
E 5 HOH A 77 252 80 HOH HOH . 
E 5 HOH A 78 253 81 HOH HOH . 
E 5 HOH A 79 254 82 HOH HOH . 
E 5 HOH A 80 255 83 HOH HOH . 
E 5 HOH A 81 256 84 HOH HOH . 
E 5 HOH A 82 257 85 HOH HOH . 
E 5 HOH A 83 258 86 HOH HOH . 
E 5 HOH A 84 259 87 HOH HOH . 
E 5 HOH A 85 260 88 HOH HOH . 
E 5 HOH A 86 261 89 HOH HOH . 
E 5 HOH A 87 262 90 HOH HOH . 
E 5 HOH A 88 263 91 HOH HOH . 
E 5 HOH A 89 264 92 HOH HOH . 
E 5 HOH A 90 265 93 HOH HOH . 
E 5 HOH A 91 266 94 HOH HOH . 
E 5 HOH A 92 267 95 HOH HOH . 
E 5 HOH A 93 268 96 HOH HOH . 
E 5 HOH A 94 269 97 HOH HOH . 
E 5 HOH A 95 270 98 HOH HOH . 
E 5 HOH A 96 271 99 HOH HOH . 
E 5 HOH A 97 272 100 HOH HOH . 
E 5 HOH A 98 273 101 HOH HOH . 
E 5 HOH A 99 274 102 HOH HOH . 
E 5 HOH A 100 275 103 HOH HOH . 
E 5 HOH A 101 276 104 HOH HOH . 
E 5 HOH A 102 277 105 HOH HOH . 
E 5 HOH A 103 278 106 HOH HOH . 
E 5 HOH A 104 279 107 HOH HOH . 
E 5 HOH A 105 280 108 HOH HOH . 
E 5 HOH A 106 281 109 HOH HOH . 
E 5 HOH A 107 282 110 HOH HOH . 
E 5 HOH A 108 283 111 HOH HOH . 
E 5 HOH A 109 284 112 HOH HOH . 
E 5 HOH A 110 285 113 HOH HOH . 
E 5 HOH A 111 286 114 HOH HOH . 
E 5 HOH A 112 287 115 HOH HOH . 
E 5 HOH A 113 288 116 HOH HOH . 
E 5 HOH A 114 289 117 HOH HOH . 
E 5 HOH A 115 290 118 HOH HOH . 
E 5 HOH A 116 291 119 HOH HOH . 
E 5 HOH A 117 292 120 HOH HOH . 
E 5 HOH A 118 293 121 HOH HOH . 
E 5 HOH A 119 294 122 HOH HOH . 
E 5 HOH A 120 295 123 HOH HOH . 
E 5 HOH A 121 296 124 HOH HOH . 
E 5 HOH A 122 297 125 HOH HOH . 
E 5 HOH A 123 298 126 HOH HOH . 
E 5 HOH A 124 299 127 HOH HOH . 
E 5 HOH A 125 300 128 HOH HOH . 
E 5 HOH A 126 301 129 HOH HOH . 
E 5 HOH A 127 302 130 HOH HOH . 
E 5 HOH A 128 303 131 HOH HOH . 
E 5 HOH A 129 304 132 HOH HOH . 
E 5 HOH A 130 305 133 HOH HOH . 
E 5 HOH A 131 306 134 HOH HOH . 
E 5 HOH A 132 307 135 HOH HOH . 
E 5 HOH A 133 308 136 HOH HOH . 
E 5 HOH A 134 309 137 HOH HOH . 
E 5 HOH A 135 310 138 HOH HOH . 
E 5 HOH A 136 311 139 HOH HOH . 
E 5 HOH A 137 312 140 HOH HOH . 
E 5 HOH A 138 313 141 HOH HOH . 
E 5 HOH A 139 314 142 HOH HOH . 
E 5 HOH A 140 315 143 HOH HOH . 
E 5 HOH A 141 316 144 HOH HOH . 
E 5 HOH A 142 317 145 HOH HOH . 
E 5 HOH A 143 318 146 HOH HOH . 
E 5 HOH A 144 319 147 HOH HOH . 
E 5 HOH A 145 320 148 HOH HOH . 
E 5 HOH A 146 321 149 HOH HOH . 
E 5 HOH A 147 322 150 HOH HOH . 
E 5 HOH A 148 323 151 HOH HOH . 
E 5 HOH A 149 324 152 HOH HOH . 
E 5 HOH A 150 325 153 HOH HOH . 
E 5 HOH A 151 326 154 HOH HOH . 
E 5 HOH A 152 327 155 HOH HOH . 
E 5 HOH A 153 328 156 HOH HOH . 
E 5 HOH A 154 329 157 HOH HOH . 
E 5 HOH A 155 330 158 HOH HOH . 
E 5 HOH A 156 331 159 HOH HOH . 
E 5 HOH A 157 332 160 HOH HOH . 
E 5 HOH A 158 333 161 HOH HOH . 
E 5 HOH A 159 334 162 HOH HOH . 
E 5 HOH A 160 335 163 HOH HOH . 
E 5 HOH A 161 336 164 HOH HOH . 
E 5 HOH A 162 337 165 HOH HOH . 
E 5 HOH A 163 338 166 HOH HOH . 
E 5 HOH A 164 339 167 HOH HOH . 
E 5 HOH A 165 340 168 HOH HOH . 
E 5 HOH A 166 341 169 HOH HOH . 
E 5 HOH A 167 342 170 HOH HOH . 
E 5 HOH A 168 343 171 HOH HOH . 
E 5 HOH A 169 344 172 HOH HOH . 
E 5 HOH A 170 345 173 HOH HOH . 
E 5 HOH A 171 346 174 HOH HOH . 
E 5 HOH A 172 347 175 HOH HOH . 
E 5 HOH A 173 348 176 HOH HOH . 
E 5 HOH A 174 349 177 HOH HOH . 
E 5 HOH A 175 350 178 HOH HOH . 
E 5 HOH A 176 351 179 HOH HOH . 
E 5 HOH A 177 352 180 HOH HOH . 
E 5 HOH A 178 353 181 HOH HOH . 
E 5 HOH A 179 354 182 HOH HOH . 
E 5 HOH A 180 355 183 HOH HOH . 
E 5 HOH A 181 356 184 HOH HOH . 
E 5 HOH A 182 357 185 HOH HOH . 
E 5 HOH A 183 358 186 HOH HOH . 
E 5 HOH A 184 359 187 HOH HOH . 
E 5 HOH A 185 360 188 HOH HOH . 
E 5 HOH A 186 361 189 HOH HOH . 
E 5 HOH A 187 362 190 HOH HOH . 
E 5 HOH A 188 363 191 HOH HOH . 
E 5 HOH A 189 364 192 HOH HOH . 
E 5 HOH A 190 365 193 HOH HOH . 
E 5 HOH A 191 366 194 HOH HOH . 
E 5 HOH A 192 367 195 HOH HOH . 
E 5 HOH A 193 368 196 HOH HOH . 
E 5 HOH A 194 369 197 HOH HOH . 
E 5 HOH A 195 370 198 HOH HOH . 
E 5 HOH A 196 371 199 HOH HOH . 
E 5 HOH A 197 372 200 HOH HOH . 
E 5 HOH A 198 373 201 HOH HOH . 
E 5 HOH A 199 374 202 HOH HOH . 
E 5 HOH A 200 375 203 HOH HOH . 
E 5 HOH A 201 376 204 HOH HOH . 
E 5 HOH A 202 377 205 HOH HOH . 
E 5 HOH A 203 378 206 HOH HOH . 
E 5 HOH A 204 379 207 HOH HOH . 
E 5 HOH A 205 380 208 HOH HOH . 
E 5 HOH A 206 381 209 HOH HOH . 
E 5 HOH A 207 382 210 HOH HOH . 
E 5 HOH A 208 383 211 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 31.118 4.894 33.185 1 24.36 ? C1 EDO 175 A 1 
HETATM 2 O O1 EDO . . . D 4 32.186 5.009 32.215 1 29.25 ? O1 EDO 175 A 1 
HETATM 3 C C2 EDO . . . D 4 31.648 5.3 34.543 1 25.9 ? C2 EDO 175 A 1 
HETATM 4 O O2 EDO . . . D 4 32.759 4.458 34.904 1 29.32 ? O2 EDO 175 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#