data_2R79 # _model_server_result.job_id hO1I-jYbsWUar1gNTXqFkQ _model_server_result.datetime_utc '2025-01-02 19:47:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r79 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":890}' # _entry.id 2R79 # _exptl.entry_id 2R79 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2R79 _cell.length_a 132.913 _cell.length_b 132.913 _cell.length_c 72.93 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R79 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -y+2,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 265.826 0 0 3 'crystal symmetry operation' 3_775 -x+y+2,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 132.913 230.212069 0 4 'crystal symmetry operation' 10_774 -y+2,-x+2,-z-1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 132.913 230.212069 -36.465 5 'crystal symmetry operation' 11_754 -x+y+2,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 265.826 0 -36.465 6 'crystal symmetry operation' 12_554 x,x-y,-z-1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 -36.465 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OH _struct_conn.ptnr1_label_comp_id TYR _struct_conn.ptnr1_label_seq_id 46 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id TYR _struct_conn.ptnr1_auth_seq_id 71 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 500 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.298 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 2R79 _atom_sites.fract_transf_matrix[1][1] 0.007524 _atom_sites.fract_transf_matrix[1][2] 0.004344 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008688 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 900 900 SO4 SO4 . C 2 SO4 A 1 910 910 SO4 SO4 . D 3 HEM A 1 500 500 HEM HEM . E 4 GOL A 1 880 880 GOL GOL . F 4 GOL A 1 890 890 GOL GOL . G 5 HOH A 1 911 1 HOH HOH . G 5 HOH A 2 912 2 HOH HOH . G 5 HOH A 3 913 3 HOH HOH . G 5 HOH A 4 914 4 HOH HOH . G 5 HOH A 5 915 5 HOH HOH . G 5 HOH A 6 916 6 HOH HOH . G 5 HOH A 7 917 7 HOH HOH . G 5 HOH A 8 918 8 HOH HOH . G 5 HOH A 9 919 9 HOH HOH . G 5 HOH A 10 920 10 HOH HOH . G 5 HOH A 11 921 11 HOH HOH . G 5 HOH A 12 922 12 HOH HOH . G 5 HOH A 13 923 13 HOH HOH . G 5 HOH A 14 924 14 HOH HOH . G 5 HOH A 15 925 15 HOH HOH . G 5 HOH A 16 926 16 HOH HOH . G 5 HOH A 17 927 17 HOH HOH . G 5 HOH A 18 928 18 HOH HOH . G 5 HOH A 19 929 19 HOH HOH . G 5 HOH A 20 930 20 HOH HOH . G 5 HOH A 21 931 21 HOH HOH . G 5 HOH A 22 932 22 HOH HOH . G 5 HOH A 23 933 23 HOH HOH . G 5 HOH A 24 934 24 HOH HOH . G 5 HOH A 25 935 25 HOH HOH . G 5 HOH A 26 936 26 HOH HOH . G 5 HOH A 27 937 27 HOH HOH . G 5 HOH A 28 938 28 HOH HOH . G 5 HOH A 29 939 29 HOH HOH . G 5 HOH A 30 940 30 HOH HOH . G 5 HOH A 31 941 31 HOH HOH . G 5 HOH A 32 942 32 HOH HOH . G 5 HOH A 33 943 33 HOH HOH . G 5 HOH A 34 944 34 HOH HOH . G 5 HOH A 35 945 35 HOH HOH . G 5 HOH A 36 946 36 HOH HOH . G 5 HOH A 37 947 37 HOH HOH . G 5 HOH A 38 948 38 HOH HOH . G 5 HOH A 39 949 39 HOH HOH . G 5 HOH A 40 950 40 HOH HOH . G 5 HOH A 41 951 41 HOH HOH . G 5 HOH A 42 952 42 HOH HOH . G 5 HOH A 43 953 43 HOH HOH . G 5 HOH A 44 954 44 HOH HOH . G 5 HOH A 45 955 45 HOH HOH . G 5 HOH A 46 956 46 HOH HOH . G 5 HOH A 47 957 47 HOH HOH . G 5 HOH A 48 958 48 HOH HOH . G 5 HOH A 49 959 49 HOH HOH . G 5 HOH A 50 960 50 HOH HOH . G 5 HOH A 51 961 51 HOH HOH . G 5 HOH A 52 962 52 HOH HOH . G 5 HOH A 53 963 53 HOH HOH . G 5 HOH A 54 964 54 HOH HOH . G 5 HOH A 55 965 55 HOH HOH . G 5 HOH A 56 966 56 HOH HOH . G 5 HOH A 57 967 57 HOH HOH . G 5 HOH A 58 968 58 HOH HOH . G 5 HOH A 59 969 59 HOH HOH . G 5 HOH A 60 970 60 HOH HOH . G 5 HOH A 61 971 61 HOH HOH . G 5 HOH A 62 972 62 HOH HOH . G 5 HOH A 63 973 63 HOH HOH . G 5 HOH A 64 974 64 HOH HOH . G 5 HOH A 65 975 65 HOH HOH . G 5 HOH A 66 976 66 HOH HOH . G 5 HOH A 67 977 67 HOH HOH . G 5 HOH A 68 978 68 HOH HOH . G 5 HOH A 69 979 69 HOH HOH . G 5 HOH A 70 980 70 HOH HOH . G 5 HOH A 71 981 71 HOH HOH . G 5 HOH A 72 982 72 HOH HOH . G 5 HOH A 73 983 73 HOH HOH . G 5 HOH A 74 984 74 HOH HOH . G 5 HOH A 75 985 75 HOH HOH . G 5 HOH A 76 986 76 HOH HOH . G 5 HOH A 77 987 77 HOH HOH . G 5 HOH A 78 988 78 HOH HOH . G 5 HOH A 79 989 79 HOH HOH . G 5 HOH A 80 990 80 HOH HOH . G 5 HOH A 81 991 81 HOH HOH . G 5 HOH A 82 992 82 HOH HOH . G 5 HOH A 83 993 83 HOH HOH . G 5 HOH A 84 994 84 HOH HOH . G 5 HOH A 85 995 85 HOH HOH . G 5 HOH A 86 996 86 HOH HOH . G 5 HOH A 87 997 87 HOH HOH . G 5 HOH A 88 998 88 HOH HOH . G 5 HOH A 89 999 89 HOH HOH . G 5 HOH A 90 1000 90 HOH HOH . G 5 HOH A 91 1001 91 HOH HOH . G 5 HOH A 92 1002 92 HOH HOH . G 5 HOH A 93 1003 93 HOH HOH . G 5 HOH A 94 1004 94 HOH HOH . G 5 HOH A 95 1005 95 HOH HOH . G 5 HOH A 96 1006 96 HOH HOH . G 5 HOH A 97 1007 97 HOH HOH . G 5 HOH A 98 1008 98 HOH HOH . G 5 HOH A 99 1009 99 HOH HOH . G 5 HOH A 100 1010 100 HOH HOH . G 5 HOH A 101 1011 101 HOH HOH . G 5 HOH A 102 1012 102 HOH HOH . G 5 HOH A 103 1013 103 HOH HOH . G 5 HOH A 104 1014 104 HOH HOH . G 5 HOH A 105 1015 105 HOH HOH . G 5 HOH A 106 1016 106 HOH HOH . G 5 HOH A 107 1017 107 HOH HOH . G 5 HOH A 108 1018 108 HOH HOH . G 5 HOH A 109 1019 109 HOH HOH . G 5 HOH A 110 1020 110 HOH HOH . G 5 HOH A 111 1021 111 HOH HOH . G 5 HOH A 112 1022 112 HOH HOH . G 5 HOH A 113 1023 113 HOH HOH . G 5 HOH A 114 1024 114 HOH HOH . G 5 HOH A 115 1025 115 HOH HOH . G 5 HOH A 116 1026 116 HOH HOH . G 5 HOH A 117 1027 117 HOH HOH . G 5 HOH A 118 1028 118 HOH HOH . G 5 HOH A 119 1029 119 HOH HOH . G 5 HOH A 120 1030 120 HOH HOH . G 5 HOH A 121 1031 121 HOH HOH . G 5 HOH A 122 1032 122 HOH HOH . G 5 HOH A 123 1033 123 HOH HOH . G 5 HOH A 124 1034 124 HOH HOH . G 5 HOH A 125 1035 125 HOH HOH . G 5 HOH A 126 1036 126 HOH HOH . G 5 HOH A 127 1037 127 HOH HOH . G 5 HOH A 128 1038 128 HOH HOH . G 5 HOH A 129 1039 129 HOH HOH . G 5 HOH A 130 1040 130 HOH HOH . G 5 HOH A 131 1041 131 HOH HOH . G 5 HOH A 132 1042 132 HOH HOH . G 5 HOH A 133 1043 133 HOH HOH . G 5 HOH A 134 1044 134 HOH HOH . G 5 HOH A 135 1045 135 HOH HOH . G 5 HOH A 136 1046 136 HOH HOH . G 5 HOH A 137 1047 137 HOH HOH . G 5 HOH A 138 1048 138 HOH HOH . G 5 HOH A 139 1049 139 HOH HOH . G 5 HOH A 140 1050 140 HOH HOH . G 5 HOH A 141 1051 141 HOH HOH . G 5 HOH A 142 1052 142 HOH HOH . G 5 HOH A 143 1053 143 HOH HOH . G 5 HOH A 144 1054 144 HOH HOH . G 5 HOH A 145 1055 145 HOH HOH . G 5 HOH A 146 1056 146 HOH HOH . G 5 HOH A 147 1057 147 HOH HOH . G 5 HOH A 148 1058 148 HOH HOH . G 5 HOH A 149 1059 149 HOH HOH . G 5 HOH A 150 1060 150 HOH HOH . G 5 HOH A 151 1061 151 HOH HOH . G 5 HOH A 152 1062 152 HOH HOH . G 5 HOH A 153 1063 153 HOH HOH . G 5 HOH A 154 1064 154 HOH HOH . G 5 HOH A 155 1065 155 HOH HOH . G 5 HOH A 156 1066 156 HOH HOH . G 5 HOH A 157 1067 157 HOH HOH . G 5 HOH A 158 1068 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 141.052 113.136 0.341 1 67.81 ? C1 GOL 890 A 1 HETATM 2 O O1 GOL . . . F 4 140.265 112.468 1.312 1 68.92 ? O1 GOL 890 A 1 HETATM 3 C C2 GOL . . . F 4 140.494 112.906 -1.062 1 67.24 ? C2 GOL 890 A 1 HETATM 4 O O2 GOL . . . F 4 141.021 111.683 -1.588 1 65.89 ? O2 GOL 890 A 1 HETATM 5 C C3 GOL . . . F 4 140.883 114.074 -1.973 1 68.09 ? C3 GOL 890 A 1 HETATM 6 O O3 GOL . . . F 4 140.268 113.963 -3.247 1 67.5 ? O3 GOL 890 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #