data_2R7B # _model_server_result.job_id PNpQ4cybiDQnPHjDfZ1fig _model_server_result.datetime_utc '2025-07-03 13:31:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r7b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 2R7B # _exptl.entry_id 2R7B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 334.372 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 10,11-dimethoxy-4-methyldibenzo[c,f]-2,7-naphthyridine-3,6-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2R7B _cell.length_a 124.281 _cell.length_b 124.281 _cell.length_c 47.184 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R7B _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id SEP _struct_conn.ptnr1_label_seq_id 194 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SEP _struct_conn.ptnr1_auth_seq_id 241 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id PHE _struct_conn.ptnr2_label_seq_id 195 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PHE _struct_conn.ptnr2_auth_seq_id 242 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.334 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H18 N4 O2' _chem_comp.formula_weight 334.372 _chem_comp.id 253 _chem_comp.mon_nstd_flag . _chem_comp.name 10,11-dimethoxy-4-methyldibenzo[c,f]-2,7-naphthyridine-3,6-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C9 253 sing 1 n n C18 C17 253 sing 2 n n N20 C9 253 doub 3 n y N20 C19 253 sing 4 n y C9 C8 253 sing 5 n y C17 C19 253 doub 6 n y C17 C15 253 sing 7 n y C19 C12 253 sing 8 n y C8 C7 253 doub 9 n y C8 C11 253 sing 10 n y C7 N6 253 sing 11 n y N16 C15 253 sing 12 n n C15 C14 253 doub 13 n y N6 C5 253 doub 14 n y C12 C11 253 sing 15 n y C12 C13 253 doub 16 n y C11 C21 253 doub 17 n y C5 C21 253 sing 18 n y C5 C4 253 sing 19 n y C14 C13 253 sing 20 n y C21 C22 253 sing 21 n y C4 C3 253 doub 22 n y C22 C23 253 doub 23 n y C25 O24 253 sing 24 n n C3 C23 253 sing 25 n y C3 O2 253 sing 26 n n C23 O24 253 sing 27 n n O2 C1 253 sing 28 n n C1 H11 253 sing 29 n n C1 H12 253 sing 30 n n C1 H13A 253 sing 31 n n C25 H251 253 sing 32 n n C25 H252 253 sing 33 n n C25 H253 253 sing 34 n n C22 H22 253 sing 35 n n C18 H181 253 sing 36 n n C18 H182 253 sing 37 n n C18 H183 253 sing 38 n n N16 H161 253 sing 39 n n N16 H162 253 sing 40 n n C14 H14 253 sing 41 n n C13 H13 253 sing 42 n n N1 HN11 253 sing 43 n n N1 HN12 253 sing 44 n n C7 H7 253 sing 45 n n C4 H4 253 sing 46 n n # _atom_sites.entry_id 2R7B _atom_sites.fract_transf_matrix[1][1] 0.008046 _atom_sites.fract_transf_matrix[1][2] 0.004646 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 360 360 SO4 SO4 . C 3 253 A 1 701 701 253 253 . D 4 HOH A 1 702 702 HOH HOH . D 4 HOH A 2 703 703 HOH HOH . D 4 HOH A 3 704 704 HOH HOH . D 4 HOH A 4 705 705 HOH HOH . D 4 HOH A 5 706 706 HOH HOH . D 4 HOH A 6 707 707 HOH HOH . D 4 HOH A 7 708 708 HOH HOH . D 4 HOH A 8 709 709 HOH HOH . D 4 HOH A 9 710 710 HOH HOH . D 4 HOH A 10 711 711 HOH HOH . D 4 HOH A 11 712 712 HOH HOH . D 4 HOH A 12 713 713 HOH HOH . D 4 HOH A 13 714 714 HOH HOH . D 4 HOH A 14 715 715 HOH HOH . D 4 HOH A 15 716 716 HOH HOH . D 4 HOH A 16 717 717 HOH HOH . D 4 HOH A 17 718 718 HOH HOH . D 4 HOH A 18 719 719 HOH HOH . D 4 HOH A 19 720 720 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 253 . . . C 3 89.263 14.015 15.091 1 26.99 ? C1 253 701 A 1 HETATM 2 O O2 253 . . . C 3 88.85 15.185 14.4 1 30.47 ? O2 253 701 A 1 HETATM 3 C C3 253 . . . C 3 87.497 15.243 14.013 1 30.66 ? C3 253 701 A 1 HETATM 4 C C23 253 . . . C 3 86.876 16.521 14.049 1 30.41 ? C23 253 701 A 1 HETATM 5 O O24 253 . . . C 3 87.69 17.597 14.446 1 31.18 ? O24 253 701 A 1 HETATM 6 C C25 253 . . . C 3 87.505 18.826 13.73 1 25.51 ? C25 253 701 A 1 HETATM 7 C C22 253 . . . C 3 85.519 16.653 13.682 1 29.88 ? C22 253 701 A 1 HETATM 8 C C21 253 . . . C 3 84.723 15.557 13.228 1 28.99 ? C21 253 701 A 1 HETATM 9 C C11 253 . . . C 3 83.32 15.555 12.769 1 28.27 ? C11 253 701 A 1 HETATM 10 C C12 253 . . . C 3 82.41 16.727 12.757 1 26.91 ? C12 253 701 A 1 HETATM 11 C C19 253 . . . C 3 81.095 16.492 12.144 1 26.14 ? C19 253 701 A 1 HETATM 12 N N20 253 . . . C 3 80.721 15.252 11.643 1 28.88 ? N20 253 701 A 1 HETATM 13 C C17 253 . . . C 3 80.126 17.532 12.052 1 24.87 ? C17 253 701 A 1 HETATM 14 C C18 253 . . . C 3 78.818 17.156 11.382 1 20.46 ? C18 253 701 A 1 HETATM 15 C C15 253 . . . C 3 80.405 18.814 12.586 1 26.64 ? C15 253 701 A 1 HETATM 16 N N16 253 . . . C 3 79.49 19.815 12.538 1 29.31 ? N16 253 701 A 1 HETATM 17 C C14 253 . . . C 3 81.65 19.059 13.198 1 28.45 ? C14 253 701 A 1 HETATM 18 C C13 253 . . . C 3 82.617 18.05 13.271 1 26.23 ? C13 253 701 A 1 HETATM 19 C C8 253 . . . C 3 82.798 14.281 12.265 1 26.31 ? C8 253 701 A 1 HETATM 20 C C9 253 . . . C 3 81.497 14.175 11.714 1 27.24 ? C9 253 701 A 1 HETATM 21 N N1 253 . . . C 3 80.958 13.053 11.221 1 29.39 ? N1 253 701 A 1 HETATM 22 C C7 253 . . . C 3 83.556 13.082 12.283 1 26.52 ? C7 253 701 A 1 HETATM 23 N N6 253 . . . C 3 84.821 13.108 12.747 1 29.04 ? N6 253 701 A 1 HETATM 24 C C5 253 . . . C 3 85.412 14.262 13.19 1 28.58 ? C5 253 701 A 1 HETATM 25 C C4 253 . . . C 3 86.743 14.126 13.584 1 29.42 ? C4 253 701 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #