data_2R7L # _model_server_result.job_id wzHfeKRHk00ZB-4zDL6qIg _model_server_result.datetime_utc '2024-10-10 07:26:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r7l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":400}' # _entry.id 2R7L # _exptl.entry_id 2R7L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2R7L _cell.length_a 109.554 _cell.length_b 109.554 _cell.length_c 255.807 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R7L _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 108 n n PG O2G ATP sing 109 n n PG O3G ATP sing 110 n n PG O3B ATP sing 111 n n O2G HOG2 ATP sing 112 n n O3G HOG3 ATP sing 113 n n PB O1B ATP doub 114 n n PB O2B ATP sing 115 n n PB O3B ATP sing 116 n n PB O3A ATP sing 117 n n O2B HOB2 ATP sing 118 n n PA O1A ATP doub 119 n n PA O2A ATP sing 120 n n PA O3A ATP sing 121 n n PA O5' ATP sing 122 n n O2A HOA2 ATP sing 123 n n O5' C5' ATP sing 124 n n C5' C4' ATP sing 125 n n C5' "H5'1" ATP sing 126 n n C5' "H5'2" ATP sing 127 n n C4' O4' ATP sing 128 n n C4' C3' ATP sing 129 n n C4' H4' ATP sing 130 n n O4' C1' ATP sing 131 n n C3' O3' ATP sing 132 n n C3' C2' ATP sing 133 n n C3' H3' ATP sing 134 n n O3' HO3' ATP sing 135 n n C2' O2' ATP sing 136 n n C2' C1' ATP sing 137 n n C2' H2' ATP sing 138 n n O2' HO2' ATP sing 139 n n C1' N9 ATP sing 140 n n C1' H1' ATP sing 141 n n N9 C8 ATP sing 142 n y N9 C4 ATP sing 143 n y C8 N7 ATP doub 144 n y C8 H8 ATP sing 145 n n N7 C5 ATP sing 146 n y C5 C6 ATP sing 147 n y C5 C4 ATP doub 148 n y C6 N6 ATP sing 149 n n C6 N1 ATP doub 150 n y N6 HN61 ATP sing 151 n n N6 HN62 ATP sing 152 n n N1 C2 ATP sing 153 n y C2 N3 ATP doub 154 n y C2 H2 ATP sing 155 n n N3 C4 ATP sing 156 n y # _atom_sites.entry_id 2R7L _atom_sites.fract_transf_matrix[1][1] 0.009128 _atom_sites.fract_transf_matrix[1][2] 0.00527 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01054 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003909 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 500 500 SO4 SO4 . C 3 CL A 1 601 601 CL CL . D 3 CL A 1 602 602 CL CL . E 4 ATP A 1 400 400 ATP ATP . F 5 AMZ A 1 401 401 AMZ AMZ . G 6 HOH A 1 603 1 HOH HOH . G 6 HOH A 2 604 2 HOH HOH . G 6 HOH A 3 605 3 HOH HOH . G 6 HOH A 4 606 4 HOH HOH . G 6 HOH A 5 607 5 HOH HOH . G 6 HOH A 6 608 6 HOH HOH . G 6 HOH A 7 609 7 HOH HOH . G 6 HOH A 8 610 8 HOH HOH . G 6 HOH A 9 611 9 HOH HOH . G 6 HOH A 10 612 10 HOH HOH . G 6 HOH A 11 613 11 HOH HOH . G 6 HOH A 12 614 12 HOH HOH . G 6 HOH A 13 615 13 HOH HOH . G 6 HOH A 14 616 14 HOH HOH . G 6 HOH A 15 617 15 HOH HOH . G 6 HOH A 16 618 16 HOH HOH . G 6 HOH A 17 619 17 HOH HOH . G 6 HOH A 18 620 18 HOH HOH . G 6 HOH A 19 621 19 HOH HOH . G 6 HOH A 20 622 20 HOH HOH . G 6 HOH A 21 623 21 HOH HOH . G 6 HOH A 22 624 22 HOH HOH . G 6 HOH A 23 625 23 HOH HOH . G 6 HOH A 24 626 24 HOH HOH . G 6 HOH A 25 627 25 HOH HOH . G 6 HOH A 26 628 26 HOH HOH . G 6 HOH A 27 629 27 HOH HOH . G 6 HOH A 28 630 28 HOH HOH . G 6 HOH A 29 631 29 HOH HOH . G 6 HOH A 30 632 30 HOH HOH . G 6 HOH A 31 633 31 HOH HOH . G 6 HOH A 32 634 32 HOH HOH . G 6 HOH A 33 635 33 HOH HOH . G 6 HOH A 34 636 34 HOH HOH . G 6 HOH A 35 637 35 HOH HOH . G 6 HOH A 36 638 36 HOH HOH . G 6 HOH A 37 639 37 HOH HOH . G 6 HOH A 38 640 38 HOH HOH . G 6 HOH A 39 641 39 HOH HOH . G 6 HOH A 40 642 40 HOH HOH . G 6 HOH A 41 643 41 HOH HOH . G 6 HOH A 42 644 42 HOH HOH . G 6 HOH A 43 645 43 HOH HOH . G 6 HOH A 44 646 44 HOH HOH . G 6 HOH A 45 647 45 HOH HOH . G 6 HOH A 46 648 46 HOH HOH . G 6 HOH A 47 649 47 HOH HOH . G 6 HOH A 48 650 48 HOH HOH . G 6 HOH A 49 651 49 HOH HOH . G 6 HOH A 50 652 50 HOH HOH . G 6 HOH A 51 653 51 HOH HOH . G 6 HOH A 52 654 52 HOH HOH . G 6 HOH A 53 655 53 HOH HOH . G 6 HOH A 54 656 54 HOH HOH . G 6 HOH A 55 657 55 HOH HOH . G 6 HOH A 56 658 56 HOH HOH . G 6 HOH A 57 659 57 HOH HOH . G 6 HOH A 58 660 58 HOH HOH . G 6 HOH A 59 661 59 HOH HOH . G 6 HOH A 60 662 60 HOH HOH . G 6 HOH A 61 663 61 HOH HOH . G 6 HOH A 62 664 62 HOH HOH . G 6 HOH A 63 665 63 HOH HOH . G 6 HOH A 64 666 64 HOH HOH . G 6 HOH A 65 667 65 HOH HOH . G 6 HOH A 66 668 66 HOH HOH . G 6 HOH A 67 669 67 HOH HOH . G 6 HOH A 68 670 68 HOH HOH . G 6 HOH A 69 671 69 HOH HOH . G 6 HOH A 70 672 70 HOH HOH . G 6 HOH A 71 673 71 HOH HOH . G 6 HOH A 72 674 72 HOH HOH . G 6 HOH A 73 675 73 HOH HOH . G 6 HOH A 74 676 74 HOH HOH . G 6 HOH A 75 677 75 HOH HOH . G 6 HOH A 76 678 76 HOH HOH . G 6 HOH A 77 679 77 HOH HOH . G 6 HOH A 78 680 78 HOH HOH . G 6 HOH A 79 681 79 HOH HOH . G 6 HOH A 80 682 80 HOH HOH . G 6 HOH A 81 683 81 HOH HOH . G 6 HOH A 82 684 82 HOH HOH . G 6 HOH A 83 685 83 HOH HOH . G 6 HOH A 84 686 84 HOH HOH . G 6 HOH A 85 687 85 HOH HOH . G 6 HOH A 86 688 86 HOH HOH . G 6 HOH A 87 689 87 HOH HOH . G 6 HOH A 88 690 88 HOH HOH . G 6 HOH A 89 691 89 HOH HOH . G 6 HOH A 90 692 90 HOH HOH . G 6 HOH A 91 693 91 HOH HOH . G 6 HOH A 92 694 92 HOH HOH . G 6 HOH A 93 695 93 HOH HOH . G 6 HOH A 94 696 94 HOH HOH . G 6 HOH A 95 697 95 HOH HOH . G 6 HOH A 96 698 96 HOH HOH . G 6 HOH A 97 699 97 HOH HOH . G 6 HOH A 98 700 98 HOH HOH . G 6 HOH A 99 701 99 HOH HOH . G 6 HOH A 100 702 100 HOH HOH . G 6 HOH A 101 703 101 HOH HOH . G 6 HOH A 102 704 102 HOH HOH . G 6 HOH A 103 705 103 HOH HOH . G 6 HOH A 104 706 104 HOH HOH . G 6 HOH A 105 707 105 HOH HOH . G 6 HOH A 106 708 106 HOH HOH . G 6 HOH A 107 709 107 HOH HOH . G 6 HOH A 108 710 108 HOH HOH . G 6 HOH A 109 711 109 HOH HOH . G 6 HOH A 110 712 110 HOH HOH . G 6 HOH A 111 713 111 HOH HOH . G 6 HOH A 112 714 112 HOH HOH . G 6 HOH A 113 715 113 HOH HOH . G 6 HOH A 114 716 114 HOH HOH . G 6 HOH A 115 717 115 HOH HOH . G 6 HOH A 116 718 116 HOH HOH . G 6 HOH A 117 719 117 HOH HOH . G 6 HOH A 118 720 118 HOH HOH . G 6 HOH A 119 721 119 HOH HOH . G 6 HOH A 120 722 120 HOH HOH . G 6 HOH A 121 723 121 HOH HOH . G 6 HOH A 122 724 122 HOH HOH . G 6 HOH A 123 725 123 HOH HOH . G 6 HOH A 124 726 124 HOH HOH . G 6 HOH A 125 727 125 HOH HOH . G 6 HOH A 126 728 126 HOH HOH . G 6 HOH A 127 729 127 HOH HOH . G 6 HOH A 128 730 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 4 15.779 7.584 31.197 1 56.33 ? PG ATP 400 A 1 HETATM 2 O O1G ATP . . . E 4 16.755 7.886 30.082 1 53.25 ? O1G ATP 400 A 1 HETATM 3 O O2G ATP . . . E 4 14.367 8.072 30.94 1 46.99 ? O2G ATP 400 A 1 HETATM 4 O O3G ATP . . . E 4 15.857 6.161 31.698 1 56.65 ? O3G ATP 400 A 1 HETATM 5 P PB ATP . . . E 4 16.171 10.079 32.52 1 47.22 ? PB ATP 400 A 1 HETATM 6 O O1B ATP . . . E 4 15.704 10.602 31.184 1 49.54 ? O1B ATP 400 A 1 HETATM 7 O O2B ATP . . . E 4 17.444 10.644 33.11 1 50.83 ? O2B ATP 400 A 1 HETATM 8 O O3B ATP . . . E 4 16.324 8.469 32.445 1 49.13 ? O3B ATP 400 A 1 HETATM 9 P PA ATP . . . E 4 15.076 10.425 35.159 1 40.04 ? PA ATP 400 A 1 HETATM 10 O O1A ATP . . . E 4 15.021 11.88 35.546 1 36.87 ? O1A ATP 400 A 1 HETATM 11 O O2A ATP . . . E 4 16.177 9.515 35.632 1 40.82 ? O2A ATP 400 A 1 HETATM 12 O O3A ATP . . . E 4 14.946 10.328 33.545 1 46.35 ? O3A ATP 400 A 1 HETATM 13 O O5' ATP . . . E 4 13.685 9.776 35.615 1 38.31 ? O5' ATP 400 A 1 HETATM 14 C C5' ATP . . . E 4 13.577 8.367 35.733 1 38.81 ? C5' ATP 400 A 1 HETATM 15 C C4' ATP . . . E 4 12.155 8.046 36.162 1 39.6 ? C4' ATP 400 A 1 HETATM 16 O O4' ATP . . . E 4 11.91 8.536 37.485 1 36.02 ? O4' ATP 400 A 1 HETATM 17 C C3' ATP . . . E 4 11.112 8.716 35.285 1 39.04 ? C3' ATP 400 A 1 HETATM 18 O O3' ATP . . . E 4 10.8 7.934 34.128 1 46.13 ? O3' ATP 400 A 1 HETATM 19 C C2' ATP . . . E 4 9.929 8.856 36.223 1 39.09 ? C2' ATP 400 A 1 HETATM 20 O O2' ATP . . . E 4 9.157 7.656 36.232 1 36.32 ? O2' ATP 400 A 1 HETATM 21 C C1' ATP . . . E 4 10.572 9.032 37.593 1 31.08 ? C1' ATP 400 A 1 HETATM 22 N N9 ATP . . . E 4 10.64 10.478 37.875 1 32.87 ? N9 ATP 400 A 1 HETATM 23 C C8 ATP . . . E 4 11.643 11.291 37.49 1 29.06 ? C8 ATP 400 A 1 HETATM 24 N N7 ATP . . . E 4 11.41 12.566 37.886 1 31.25 ? N7 ATP 400 A 1 HETATM 25 C C5 ATP . . . E 4 10.242 12.576 38.556 1 31.49 ? C5 ATP 400 A 1 HETATM 26 C C6 ATP . . . E 4 9.425 13.596 39.249 1 30.22 ? C6 ATP 400 A 1 HETATM 27 N N6 ATP . . . E 4 9.815 14.893 39.304 1 30.68 ? N6 ATP 400 A 1 HETATM 28 N N1 ATP . . . E 4 8.268 13.187 39.806 1 33.53 ? N1 ATP 400 A 1 HETATM 29 C C2 ATP . . . E 4 7.864 11.898 39.752 1 30.45 ? C2 ATP 400 A 1 HETATM 30 N N3 ATP . . . E 4 8.562 10.922 39.149 1 28.55 ? N3 ATP 400 A 1 HETATM 31 C C4 ATP . . . E 4 9.731 11.197 38.533 1 29.35 ? C4 ATP 400 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #