data_2R7L # _model_server_result.job_id LEYcBVeobNkjAXbE3gpFqQ _model_server_result.datetime_utc '2024-10-10 07:25:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r7l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 2R7L # _exptl.entry_id 2R7L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 338.211 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2R7L _cell.length_a 109.554 _cell.length_b 109.554 _cell.length_c 255.807 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R7L _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H15 N4 O8 P' _chem_comp.formula_weight 338.211 _chem_comp.id AMZ _chem_comp.mon_nstd_flag . _chem_comp.name 'AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms AICAR # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C6 AMZ doub 13 n n C6 N2 AMZ sing 14 n n C6 C3A AMZ sing 15 n n N2 H11 AMZ sing 16 n n N2 H12 AMZ sing 17 n n C3A C7A AMZ doub 18 n y C3A N1 AMZ sing 19 n y C7A N3 AMZ sing 20 n n C7A N AMZ sing 21 n y N3 H9 AMZ sing 22 n n N3 H10 AMZ sing 23 n n N1 C5 AMZ doub 24 n y C5 N AMZ sing 25 n y C5 H13 AMZ sing 26 n n N C1 AMZ sing 27 n n C1 C2 AMZ sing 28 n n C1 O AMZ sing 29 n n C1 H2 AMZ sing 30 n n C2 C3 AMZ sing 31 n n C2 O1 AMZ sing 32 n n C2 H3 AMZ sing 33 n n C3 O2 AMZ sing 34 n n C3 C AMZ sing 35 n n C3 H4 AMZ sing 36 n n O2 H5 AMZ sing 37 n n O1 H1 AMZ sing 38 n n O C AMZ sing 39 n n C C4 AMZ sing 40 n n C H6 AMZ sing 41 n n C4 O3 AMZ sing 42 n n C4 H7 AMZ sing 43 n n C4 H8 AMZ sing 44 n n O3 P AMZ sing 45 n n P OP1 AMZ sing 46 n n P O4 AMZ sing 47 n n P OP2 AMZ doub 48 n n OP1 H15 AMZ sing 49 n n O4 H14 AMZ sing 50 n n # _atom_sites.entry_id 2R7L _atom_sites.fract_transf_matrix[1][1] 0.009128 _atom_sites.fract_transf_matrix[1][2] 0.00527 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01054 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003909 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 500 500 SO4 SO4 . C 3 CL A 1 601 601 CL CL . D 3 CL A 1 602 602 CL CL . E 4 ATP A 1 400 400 ATP ATP . F 5 AMZ A 1 401 401 AMZ AMZ . G 6 HOH A 1 603 1 HOH HOH . G 6 HOH A 2 604 2 HOH HOH . G 6 HOH A 3 605 3 HOH HOH . G 6 HOH A 4 606 4 HOH HOH . G 6 HOH A 5 607 5 HOH HOH . G 6 HOH A 6 608 6 HOH HOH . G 6 HOH A 7 609 7 HOH HOH . G 6 HOH A 8 610 8 HOH HOH . G 6 HOH A 9 611 9 HOH HOH . G 6 HOH A 10 612 10 HOH HOH . G 6 HOH A 11 613 11 HOH HOH . G 6 HOH A 12 614 12 HOH HOH . G 6 HOH A 13 615 13 HOH HOH . G 6 HOH A 14 616 14 HOH HOH . G 6 HOH A 15 617 15 HOH HOH . G 6 HOH A 16 618 16 HOH HOH . G 6 HOH A 17 619 17 HOH HOH . G 6 HOH A 18 620 18 HOH HOH . G 6 HOH A 19 621 19 HOH HOH . G 6 HOH A 20 622 20 HOH HOH . G 6 HOH A 21 623 21 HOH HOH . G 6 HOH A 22 624 22 HOH HOH . G 6 HOH A 23 625 23 HOH HOH . G 6 HOH A 24 626 24 HOH HOH . G 6 HOH A 25 627 25 HOH HOH . G 6 HOH A 26 628 26 HOH HOH . G 6 HOH A 27 629 27 HOH HOH . G 6 HOH A 28 630 28 HOH HOH . G 6 HOH A 29 631 29 HOH HOH . G 6 HOH A 30 632 30 HOH HOH . G 6 HOH A 31 633 31 HOH HOH . G 6 HOH A 32 634 32 HOH HOH . G 6 HOH A 33 635 33 HOH HOH . G 6 HOH A 34 636 34 HOH HOH . G 6 HOH A 35 637 35 HOH HOH . G 6 HOH A 36 638 36 HOH HOH . G 6 HOH A 37 639 37 HOH HOH . G 6 HOH A 38 640 38 HOH HOH . G 6 HOH A 39 641 39 HOH HOH . G 6 HOH A 40 642 40 HOH HOH . G 6 HOH A 41 643 41 HOH HOH . G 6 HOH A 42 644 42 HOH HOH . G 6 HOH A 43 645 43 HOH HOH . G 6 HOH A 44 646 44 HOH HOH . G 6 HOH A 45 647 45 HOH HOH . G 6 HOH A 46 648 46 HOH HOH . G 6 HOH A 47 649 47 HOH HOH . G 6 HOH A 48 650 48 HOH HOH . G 6 HOH A 49 651 49 HOH HOH . G 6 HOH A 50 652 50 HOH HOH . G 6 HOH A 51 653 51 HOH HOH . G 6 HOH A 52 654 52 HOH HOH . G 6 HOH A 53 655 53 HOH HOH . G 6 HOH A 54 656 54 HOH HOH . G 6 HOH A 55 657 55 HOH HOH . G 6 HOH A 56 658 56 HOH HOH . G 6 HOH A 57 659 57 HOH HOH . G 6 HOH A 58 660 58 HOH HOH . G 6 HOH A 59 661 59 HOH HOH . G 6 HOH A 60 662 60 HOH HOH . G 6 HOH A 61 663 61 HOH HOH . G 6 HOH A 62 664 62 HOH HOH . G 6 HOH A 63 665 63 HOH HOH . G 6 HOH A 64 666 64 HOH HOH . G 6 HOH A 65 667 65 HOH HOH . G 6 HOH A 66 668 66 HOH HOH . G 6 HOH A 67 669 67 HOH HOH . G 6 HOH A 68 670 68 HOH HOH . G 6 HOH A 69 671 69 HOH HOH . G 6 HOH A 70 672 70 HOH HOH . G 6 HOH A 71 673 71 HOH HOH . G 6 HOH A 72 674 72 HOH HOH . G 6 HOH A 73 675 73 HOH HOH . G 6 HOH A 74 676 74 HOH HOH . G 6 HOH A 75 677 75 HOH HOH . G 6 HOH A 76 678 76 HOH HOH . G 6 HOH A 77 679 77 HOH HOH . G 6 HOH A 78 680 78 HOH HOH . G 6 HOH A 79 681 79 HOH HOH . G 6 HOH A 80 682 80 HOH HOH . G 6 HOH A 81 683 81 HOH HOH . G 6 HOH A 82 684 82 HOH HOH . G 6 HOH A 83 685 83 HOH HOH . G 6 HOH A 84 686 84 HOH HOH . G 6 HOH A 85 687 85 HOH HOH . G 6 HOH A 86 688 86 HOH HOH . G 6 HOH A 87 689 87 HOH HOH . G 6 HOH A 88 690 88 HOH HOH . G 6 HOH A 89 691 89 HOH HOH . G 6 HOH A 90 692 90 HOH HOH . G 6 HOH A 91 693 91 HOH HOH . G 6 HOH A 92 694 92 HOH HOH . G 6 HOH A 93 695 93 HOH HOH . G 6 HOH A 94 696 94 HOH HOH . G 6 HOH A 95 697 95 HOH HOH . G 6 HOH A 96 698 96 HOH HOH . G 6 HOH A 97 699 97 HOH HOH . G 6 HOH A 98 700 98 HOH HOH . G 6 HOH A 99 701 99 HOH HOH . G 6 HOH A 100 702 100 HOH HOH . G 6 HOH A 101 703 101 HOH HOH . G 6 HOH A 102 704 102 HOH HOH . G 6 HOH A 103 705 103 HOH HOH . G 6 HOH A 104 706 104 HOH HOH . G 6 HOH A 105 707 105 HOH HOH . G 6 HOH A 106 708 106 HOH HOH . G 6 HOH A 107 709 107 HOH HOH . G 6 HOH A 108 710 108 HOH HOH . G 6 HOH A 109 711 109 HOH HOH . G 6 HOH A 110 712 110 HOH HOH . G 6 HOH A 111 713 111 HOH HOH . G 6 HOH A 112 714 112 HOH HOH . G 6 HOH A 113 715 113 HOH HOH . G 6 HOH A 114 716 114 HOH HOH . G 6 HOH A 115 717 115 HOH HOH . G 6 HOH A 116 718 116 HOH HOH . G 6 HOH A 117 719 117 HOH HOH . G 6 HOH A 118 720 118 HOH HOH . G 6 HOH A 119 721 119 HOH HOH . G 6 HOH A 120 722 120 HOH HOH . G 6 HOH A 121 723 121 HOH HOH . G 6 HOH A 122 724 122 HOH HOH . G 6 HOH A 123 725 123 HOH HOH . G 6 HOH A 124 726 124 HOH HOH . G 6 HOH A 125 727 125 HOH HOH . G 6 HOH A 126 728 126 HOH HOH . G 6 HOH A 127 729 127 HOH HOH . G 6 HOH A 128 730 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 AMZ . . . F 5 13.628 2.761 25.662 1 35.53 ? O5 AMZ 401 A 1 HETATM 2 C C6 AMZ . . . F 5 13.991 3.814 26.192 1 33.97 ? C6 AMZ 401 A 1 HETATM 3 N N2 AMZ . . . F 5 13.164 4.76 26.628 1 26.89 ? N2 AMZ 401 A 1 HETATM 4 C C3A AMZ . . . F 5 15.468 4.105 26.403 1 27.91 ? C3A AMZ 401 A 1 HETATM 5 C C7A AMZ . . . F 5 16.017 5.177 27.084 1 31.41 ? C7A AMZ 401 A 1 HETATM 6 N N3 AMZ . . . F 5 15.369 6.176 27.686 1 25.65 ? N3 AMZ 401 A 1 HETATM 7 N N1 AMZ . . . F 5 16.461 3.339 25.969 1 32.69 ? N1 AMZ 401 A 1 HETATM 8 C C5 AMZ . . . F 5 17.604 3.92 26.36 1 26.94 ? C5 AMZ 401 A 1 HETATM 9 N N AMZ . . . F 5 17.33 5.039 27.04 1 35.75 ? N AMZ 401 A 1 HETATM 10 C C1 AMZ . . . F 5 18.323 5.971 27.627 1 40.42 ? C1 AMZ 401 A 1 HETATM 11 C C2 AMZ . . . F 5 18.733 5.583 29.048 1 42.31 ? C2 AMZ 401 A 1 HETATM 12 C C3 AMZ . . . F 5 20.075 4.901 28.857 1 45.06 ? C3 AMZ 401 A 1 HETATM 13 O O2 AMZ . . . F 5 20.923 5.212 29.961 1 52.16 ? O2 AMZ 401 A 1 HETATM 14 O O1 AMZ . . . F 5 18.901 6.792 29.798 1 50.91 ? O1 AMZ 401 A 1 HETATM 15 O O AMZ . . . F 5 19.483 5.831 26.79 1 38.43 ? O AMZ 401 A 1 HETATM 16 C C AMZ . . . F 5 20.628 5.594 27.615 1 48.29 ? C AMZ 401 A 1 HETATM 17 C C4 AMZ . . . F 5 21.568 4.674 26.811 1 41.52 ? C4 AMZ 401 A 1 HETATM 18 O O3 AMZ . . . F 5 20.892 3.472 26.456 1 32.8 ? O3 AMZ 401 A 1 HETATM 19 P P AMZ . . . F 5 21.641 2.085 26.585 1 35.93 ? P AMZ 401 A 1 HETATM 20 O OP1 AMZ . . . F 5 22.797 1.914 25.667 1 38.7 ? OP1 AMZ 401 A 1 HETATM 21 O O4 AMZ . . . F 5 22.117 1.941 28.114 1 41.19 ? O4 AMZ 401 A 1 HETATM 22 O OP2 AMZ . . . F 5 20.537 0.923 26.346 1 34.79 ? OP2 AMZ 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #