data_2R7M # _model_server_result.job_id 2J-7Hi5oOBXgJon0iwFcGg _model_server_result.datetime_utc '2024-11-27 12:37:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 2R7M # _exptl.entry_id 2R7M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2R7M _cell.length_a 109.446 _cell.length_b 109.446 _cell.length_c 256.257 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 2R7M _atom_sites.fract_transf_matrix[1][1] 0.009137 _atom_sites.fract_transf_matrix[1][2] 0.005275 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01055 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003902 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 500 500 SO4 SO4 . C 3 CL A 1 601 601 CL CL . D 3 CL A 1 602 602 CL CL . E 4 AMP A 1 400 400 AMP AMP . F 4 AMP A 1 401 401 AMP AMP . G 5 HOH A 1 603 1 HOH HOH . G 5 HOH A 2 604 2 HOH HOH . G 5 HOH A 3 605 3 HOH HOH . G 5 HOH A 4 606 4 HOH HOH . G 5 HOH A 5 607 5 HOH HOH . G 5 HOH A 6 608 6 HOH HOH . G 5 HOH A 7 609 7 HOH HOH . G 5 HOH A 8 610 8 HOH HOH . G 5 HOH A 9 611 9 HOH HOH . G 5 HOH A 10 612 10 HOH HOH . G 5 HOH A 11 613 11 HOH HOH . G 5 HOH A 12 614 12 HOH HOH . G 5 HOH A 13 615 13 HOH HOH . G 5 HOH A 14 616 14 HOH HOH . G 5 HOH A 15 617 15 HOH HOH . G 5 HOH A 16 618 16 HOH HOH . G 5 HOH A 17 619 17 HOH HOH . G 5 HOH A 18 620 18 HOH HOH . G 5 HOH A 19 621 19 HOH HOH . G 5 HOH A 20 622 20 HOH HOH . G 5 HOH A 21 623 21 HOH HOH . G 5 HOH A 22 624 22 HOH HOH . G 5 HOH A 23 625 23 HOH HOH . G 5 HOH A 24 626 24 HOH HOH . G 5 HOH A 25 627 25 HOH HOH . G 5 HOH A 26 628 26 HOH HOH . G 5 HOH A 27 629 27 HOH HOH . G 5 HOH A 28 630 28 HOH HOH . G 5 HOH A 29 631 29 HOH HOH . G 5 HOH A 30 632 30 HOH HOH . G 5 HOH A 31 633 31 HOH HOH . G 5 HOH A 32 634 32 HOH HOH . G 5 HOH A 33 635 33 HOH HOH . G 5 HOH A 34 636 34 HOH HOH . G 5 HOH A 35 637 35 HOH HOH . G 5 HOH A 36 638 36 HOH HOH . G 5 HOH A 37 639 37 HOH HOH . G 5 HOH A 38 640 38 HOH HOH . G 5 HOH A 39 641 39 HOH HOH . G 5 HOH A 40 642 40 HOH HOH . G 5 HOH A 41 643 41 HOH HOH . G 5 HOH A 42 644 42 HOH HOH . G 5 HOH A 43 645 43 HOH HOH . G 5 HOH A 44 646 44 HOH HOH . G 5 HOH A 45 647 45 HOH HOH . G 5 HOH A 46 648 46 HOH HOH . G 5 HOH A 47 649 47 HOH HOH . G 5 HOH A 48 650 48 HOH HOH . G 5 HOH A 49 651 49 HOH HOH . G 5 HOH A 50 652 50 HOH HOH . G 5 HOH A 51 653 51 HOH HOH . G 5 HOH A 52 654 52 HOH HOH . G 5 HOH A 53 655 53 HOH HOH . G 5 HOH A 54 656 54 HOH HOH . G 5 HOH A 55 657 55 HOH HOH . G 5 HOH A 56 658 56 HOH HOH . G 5 HOH A 57 659 57 HOH HOH . G 5 HOH A 58 660 58 HOH HOH . G 5 HOH A 59 661 59 HOH HOH . G 5 HOH A 60 662 60 HOH HOH . G 5 HOH A 61 663 61 HOH HOH . G 5 HOH A 62 664 62 HOH HOH . G 5 HOH A 63 665 63 HOH HOH . G 5 HOH A 64 666 64 HOH HOH . G 5 HOH A 65 667 65 HOH HOH . G 5 HOH A 66 668 66 HOH HOH . G 5 HOH A 67 669 67 HOH HOH . G 5 HOH A 68 670 68 HOH HOH . G 5 HOH A 69 671 69 HOH HOH . G 5 HOH A 70 672 70 HOH HOH . G 5 HOH A 71 673 71 HOH HOH . G 5 HOH A 72 674 72 HOH HOH . G 5 HOH A 73 675 73 HOH HOH . G 5 HOH A 74 676 74 HOH HOH . G 5 HOH A 75 677 75 HOH HOH . G 5 HOH A 76 678 76 HOH HOH . G 5 HOH A 77 679 77 HOH HOH . G 5 HOH A 78 680 78 HOH HOH . G 5 HOH A 79 681 79 HOH HOH . G 5 HOH A 80 682 80 HOH HOH . G 5 HOH A 81 683 81 HOH HOH . G 5 HOH A 82 684 82 HOH HOH . G 5 HOH A 83 685 83 HOH HOH . G 5 HOH A 84 686 84 HOH HOH . G 5 HOH A 85 687 85 HOH HOH . G 5 HOH A 86 688 86 HOH HOH . G 5 HOH A 87 689 87 HOH HOH . G 5 HOH A 88 690 88 HOH HOH . G 5 HOH A 89 691 89 HOH HOH . G 5 HOH A 90 692 90 HOH HOH . G 5 HOH A 91 693 91 HOH HOH . G 5 HOH A 92 694 92 HOH HOH . G 5 HOH A 93 695 93 HOH HOH . G 5 HOH A 94 696 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . F 4 21.636 1.929 26.616 1 44.48 ? P AMP 401 A 1 HETATM 2 O O1P AMP . . . F 4 22.03 1.825 28.074 1 48.31 ? O1P AMP 401 A 1 HETATM 3 O O2P AMP . . . F 4 22.814 1.884 25.668 1 47.81 ? O2P AMP 401 A 1 HETATM 4 O O3P AMP . . . F 4 20.501 1.021 26.207 1 42.04 ? O3P AMP 401 A 1 HETATM 5 O O5' AMP . . . F 4 21.002 3.4 26.438 1 45.3 ? O5' AMP 401 A 1 HETATM 6 C C5' AMP . . . F 4 21.716 4.586 26.773 1 45.75 ? C5' AMP 401 A 1 HETATM 7 C C4' AMP . . . F 4 20.802 5.559 27.529 1 55.26 ? C4' AMP 401 A 1 HETATM 8 O O4' AMP . . . F 4 19.69 5.987 26.728 1 48.36 ? O4' AMP 401 A 1 HETATM 9 C C3' AMP . . . F 4 20.208 4.965 28.804 1 53.42 ? C3' AMP 401 A 1 HETATM 10 O O3' AMP . . . F 4 20.979 5.355 29.936 1 51.93 ? O3' AMP 401 A 1 HETATM 11 C C2' AMP . . . F 4 18.803 5.527 28.894 1 50.51 ? C2' AMP 401 A 1 HETATM 12 O O2' AMP . . . F 4 18.743 6.686 29.73 1 56.03 ? O2' AMP 401 A 1 HETATM 13 C C1' AMP . . . F 4 18.468 5.962 27.482 1 45.07 ? C1' AMP 401 A 1 HETATM 14 N N9 AMP . . . F 4 17.527 4.97 26.901 1 45.73 ? N9 AMP 401 A 1 HETATM 15 C C8 AMP . . . F 4 17.891 3.852 26.254 1 37.77 ? C8 AMP 401 A 1 HETATM 16 N N7 AMP . . . F 4 16.807 3.161 25.842 1 39.45 ? N7 AMP 401 A 1 HETATM 17 C C5 AMP . . . F 4 15.717 3.845 26.228 1 38.26 ? C5 AMP 401 A 1 HETATM 18 C C6 AMP . . . F 4 14.255 3.66 26.105 1 41.83 ? C6 AMP 401 A 1 HETATM 19 N N6 AMP . . . F 4 13.748 2.567 25.473 1 40 ? N6 AMP 401 A 1 HETATM 20 N N1 AMP . . . F 4 13.457 4.606 26.66 1 40.86 ? N1 AMP 401 A 1 HETATM 21 C C2 AMP . . . F 4 13.963 5.68 27.289 1 37.44 ? C2 AMP 401 A 1 HETATM 22 N N3 AMP . . . F 4 15.279 5.906 27.438 1 41.06 ? N3 AMP 401 A 1 HETATM 23 C C4 AMP . . . F 4 16.193 5.037 26.935 1 40.55 ? C4 AMP 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #