data_2R7N # _model_server_result.job_id ozBG06qHb63GOYgy2E8zPQ _model_server_result.datetime_utc '2024-12-25 05:58:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r7n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 2R7N # _exptl.entry_id 2R7N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.221 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(formylamino)-1-(5-O-phosphono-beta-D-ribofuranosyl)-1H-imidazole-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2R7N _cell.length_a 108.001 _cell.length_b 108.001 _cell.length_c 254.275 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R7N _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N4 O9 P' _chem_comp.formula_weight 366.221 _chem_comp.id FAI _chem_comp.mon_nstd_flag . _chem_comp.name 5-(formylamino)-1-(5-O-phosphono-beta-D-ribofuranosyl)-1H-imidazole-4-carboxamide _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OP1 P FAI doub 127 n n O5 C6 FAI doub 128 n n O6 C8 FAI doub 129 n n OP2 P FAI sing 130 n n N1 C3A FAI sing 131 n y N1 C5 FAI doub 132 n y C6 C3A FAI sing 133 n n C6 N2 FAI sing 134 n n O3 P FAI sing 135 n n O3 C4 FAI sing 136 n n C3A C7A FAI doub 137 n y O C FAI sing 138 n n O C1 FAI sing 139 n n P OP3 FAI sing 140 n n C5 N FAI sing 141 n y C4 C FAI sing 142 n n C8 N3 FAI sing 143 n n C7A N FAI sing 144 n y C7A N3 FAI sing 145 n n N C1 FAI sing 146 n n C C3 FAI sing 147 n n C1 C2 FAI sing 148 n n C3 C2 FAI sing 149 n n C3 O3' FAI sing 150 n n C2 O2' FAI sing 151 n n OP2 HOP2 FAI sing 152 n n OP3 HOP3 FAI sing 153 n n C4 H41 FAI sing 154 n n C4 H42 FAI sing 155 n n C H FAI sing 156 n n C3 H3 FAI sing 157 n n O3' HO3' FAI sing 158 n n C2 H2 FAI sing 159 n n O2' HO2' FAI sing 160 n n C1 H1 FAI sing 161 n n C5 H5 FAI sing 162 n n N2 HN21 FAI sing 163 n n N2 HN22 FAI sing 164 n n N3 HN3 FAI sing 165 n n C8 H8 FAI sing 166 n n # _atom_sites.entry_id 2R7N _atom_sites.fract_transf_matrix[1][1] 0.009259 _atom_sites.fract_transf_matrix[1][2] 0.005346 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 500 500 SO4 SO4 . C 3 CL A 1 602 602 CL CL . D 4 ADP A 1 400 400 ADP ADP . E 5 FAI A 1 401 401 FAI FAI . F 6 HOH A 1 603 1 HOH HOH . F 6 HOH A 2 604 2 HOH HOH . F 6 HOH A 3 605 3 HOH HOH . F 6 HOH A 4 606 4 HOH HOH . F 6 HOH A 5 607 5 HOH HOH . F 6 HOH A 6 608 6 HOH HOH . F 6 HOH A 7 609 7 HOH HOH . F 6 HOH A 8 610 8 HOH HOH . F 6 HOH A 9 611 9 HOH HOH . F 6 HOH A 10 612 10 HOH HOH . F 6 HOH A 11 613 11 HOH HOH . F 6 HOH A 12 614 12 HOH HOH . F 6 HOH A 13 615 13 HOH HOH . F 6 HOH A 14 616 14 HOH HOH . F 6 HOH A 15 617 15 HOH HOH . F 6 HOH A 16 618 16 HOH HOH . F 6 HOH A 17 619 17 HOH HOH . F 6 HOH A 18 620 18 HOH HOH . F 6 HOH A 19 621 19 HOH HOH . F 6 HOH A 20 622 20 HOH HOH . F 6 HOH A 21 623 21 HOH HOH . F 6 HOH A 22 624 22 HOH HOH . F 6 HOH A 23 625 23 HOH HOH . F 6 HOH A 24 626 24 HOH HOH . F 6 HOH A 25 627 25 HOH HOH . F 6 HOH A 26 628 26 HOH HOH . F 6 HOH A 27 629 27 HOH HOH . F 6 HOH A 28 630 28 HOH HOH . F 6 HOH A 29 631 29 HOH HOH . F 6 HOH A 30 632 30 HOH HOH . F 6 HOH A 31 633 31 HOH HOH . F 6 HOH A 32 634 32 HOH HOH . F 6 HOH A 33 635 33 HOH HOH . F 6 HOH A 34 636 34 HOH HOH . F 6 HOH A 35 637 35 HOH HOH . F 6 HOH A 36 638 36 HOH HOH . F 6 HOH A 37 639 37 HOH HOH . F 6 HOH A 38 640 38 HOH HOH . F 6 HOH A 39 641 39 HOH HOH . F 6 HOH A 40 642 40 HOH HOH . F 6 HOH A 41 643 41 HOH HOH . F 6 HOH A 42 644 42 HOH HOH . F 6 HOH A 43 645 43 HOH HOH . F 6 HOH A 44 646 44 HOH HOH . F 6 HOH A 45 647 45 HOH HOH . F 6 HOH A 46 648 46 HOH HOH . F 6 HOH A 47 649 47 HOH HOH . F 6 HOH A 48 650 48 HOH HOH . F 6 HOH A 49 651 49 HOH HOH . F 6 HOH A 50 652 50 HOH HOH . F 6 HOH A 51 653 51 HOH HOH . F 6 HOH A 52 654 52 HOH HOH . F 6 HOH A 53 655 53 HOH HOH . F 6 HOH A 54 656 54 HOH HOH . F 6 HOH A 55 657 55 HOH HOH . F 6 HOH A 56 658 56 HOH HOH . F 6 HOH A 57 659 57 HOH HOH . F 6 HOH A 58 660 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OP2 FAI . . . E 5 20.343 0.877 25.699 1 44 ? OP2 FAI 401 A 1 HETATM 2 P P FAI . . . E 5 21.427 1.965 26.221 1 44.58 ? P FAI 401 A 1 HETATM 3 O OP1 FAI . . . E 5 22.696 1.794 25.246 1 39.14 ? OP1 FAI 401 A 1 HETATM 4 O OP3 FAI . . . E 5 21.828 1.742 27.634 1 52.32 ? OP3 FAI 401 A 1 HETATM 5 O O3 FAI . . . E 5 20.802 3.406 25.975 1 40.83 ? O3 FAI 401 A 1 HETATM 6 C C4 FAI . . . E 5 21.617 4.545 26.267 1 51.45 ? C4 FAI 401 A 1 HETATM 7 C C FAI . . . E 5 20.768 5.67 26.872 1 56.59 ? C FAI 401 A 1 HETATM 8 O O FAI . . . E 5 19.507 5.541 26.219 1 55.22 ? O FAI 401 A 1 HETATM 9 C C3 FAI . . . E 5 20.506 5.496 28.382 1 58.11 ? C3 FAI 401 A 1 HETATM 10 O O3' FAI . . . E 5 21.05 6.636 29.061 1 52.01 ? O3' FAI 401 A 1 HETATM 11 C C2 FAI . . . E 5 18.981 5.484 28.522 1 55.52 ? C2 FAI 401 A 1 HETATM 12 O O2' FAI . . . E 5 18.558 6.492 29.452 1 64.49 ? O2' FAI 401 A 1 HETATM 13 C C1 FAI . . . E 5 18.475 5.881 27.14 1 48.18 ? C1 FAI 401 A 1 HETATM 14 N N FAI . . . E 5 17.405 4.97 26.707 1 43.55 ? N FAI 401 A 1 HETATM 15 C C5 FAI . . . E 5 17.612 3.735 26.235 1 39.93 ? C5 FAI 401 A 1 HETATM 16 N N1 FAI . . . E 5 16.441 3.181 25.915 1 39.52 ? N1 FAI 401 A 1 HETATM 17 C C3A FAI . . . E 5 15.492 4.068 26.186 1 29.55 ? C3A FAI 401 A 1 HETATM 18 C C6 FAI . . . E 5 14.019 3.774 25.952 1 37.62 ? C6 FAI 401 A 1 HETATM 19 O O5 FAI . . . E 5 13.716 2.722 25.386 1 30.41 ? O5 FAI 401 A 1 HETATM 20 N N2 FAI . . . E 5 13.141 4.687 26.393 1 34.15 ? N2 FAI 401 A 1 HETATM 21 C C7A FAI . . . E 5 16.093 5.205 26.69 1 39.94 ? C7A FAI 401 A 1 HETATM 22 N N3 FAI . . . E 5 15.494 6.343 27.062 1 45.33 ? N3 FAI 401 A 1 HETATM 23 C C8 FAI . . . E 5 15.706 7.497 26.385 1 60.71 ? C8 FAI 401 A 1 HETATM 24 O O6 FAI . . . E 5 16.44 7.675 25.394 1 47.57 ? O6 FAI 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #