data_2R7X # _model_server_result.job_id L47OBVe6SzploBELagw08A _model_server_result.datetime_utc '2025-01-06 23:12:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r7x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1111}' # _entry.id 2R7X # _exptl.entry_id 2R7X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.65 _cell.angle_gamma 90 _cell.entry_id 2R7X _cell.length_a 76 _cell.length_b 143.766 _cell.length_c 112.833 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R7X _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 244 n n PG O2G GTP sing 245 n n PG O3G GTP sing 246 n n PG O3B GTP sing 247 n n O2G HOG2 GTP sing 248 n n O3G HOG3 GTP sing 249 n n O3B PB GTP sing 250 n n PB O1B GTP doub 251 n n PB O2B GTP sing 252 n n PB O3A GTP sing 253 n n O2B HOB2 GTP sing 254 n n O3A PA GTP sing 255 n n PA O1A GTP doub 256 n n PA O2A GTP sing 257 n n PA O5' GTP sing 258 n n O2A HOA2 GTP sing 259 n n O5' C5' GTP sing 260 n n C5' C4' GTP sing 261 n n C5' H5' GTP sing 262 n n C5' "H5''" GTP sing 263 n n C4' O4' GTP sing 264 n n C4' C3' GTP sing 265 n n C4' H4' GTP sing 266 n n O4' C1' GTP sing 267 n n C3' O3' GTP sing 268 n n C3' C2' GTP sing 269 n n C3' H3' GTP sing 270 n n O3' HO3' GTP sing 271 n n C2' O2' GTP sing 272 n n C2' C1' GTP sing 273 n n C2' H2' GTP sing 274 n n O2' HO2' GTP sing 275 n n C1' N9 GTP sing 276 n n C1' H1' GTP sing 277 n n N9 C8 GTP sing 278 n y N9 C4 GTP sing 279 n y C8 N7 GTP doub 280 n y C8 H8 GTP sing 281 n n N7 C5 GTP sing 282 n y C5 C6 GTP sing 283 n n C5 C4 GTP doub 284 n y C6 O6 GTP doub 285 n n C6 N1 GTP sing 286 n n N1 C2 GTP sing 287 n n N1 HN1 GTP sing 288 n n C2 N2 GTP sing 289 n n C2 N3 GTP doub 290 n n N2 HN21 GTP sing 291 n n N2 HN22 GTP sing 292 n n N3 C4 GTP sing 293 n n # _atom_sites.entry_id 2R7X _atom_sites.fract_transf_matrix[1][1] 0.013158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000149 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006956 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GTP A 1 1111 1111 GTP GTP . F 3 GTP B 1 1111 1111 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . E 3 63.483 -82.452 45.326 1 145.13 ? PG GTP 1111 A 1 HETATM 2 O O1G GTP . . . E 3 64.581 -83.018 44.699 1 145.16 ? O1G GTP 1111 A 1 HETATM 3 O O2G GTP . . . E 3 63.627 -81.692 43.887 1 144.8 ? O2G GTP 1111 A 1 HETATM 4 O O3G GTP . . . E 3 64.644 -82.927 46.316 1 145.51 ? O3G GTP 1111 A 1 HETATM 5 O O3B GTP . . . E 3 62.227 -83.53 45.554 1 144.26 ? O3B GTP 1111 A 1 HETATM 6 P PB GTP . . . E 3 62.193 -83.779 47.231 1 143.69 ? PB GTP 1111 A 1 HETATM 7 O O1B GTP . . . E 3 63.521 -84.359 47.633 1 143.88 ? O1B GTP 1111 A 1 HETATM 8 O O2B GTP . . . E 3 61.97 -82.352 47.98 1 143.55 ? O2B GTP 1111 A 1 HETATM 9 O O3A GTP . . . E 3 61.116 -84.867 47.825 1 142.52 ? O3A GTP 1111 A 1 HETATM 10 P PA GTP . . . E 3 61.14 -84.696 49.487 1 141.9 ? PA GTP 1111 A 1 HETATM 11 O O1A GTP . . . E 3 62.549 -84.729 49.992 1 142.27 ? O1A GTP 1111 A 1 HETATM 12 O O2A GTP . . . E 3 60.445 -83.298 49.902 1 142.7 ? O2A GTP 1111 A 1 HETATM 13 O O5' GTP . . . E 3 60.359 -85.899 50.185 1 141.24 ? O5' GTP 1111 A 1 HETATM 14 C C5' GTP . . . E 3 60.238 -85.79 51.556 1 138.66 ? C5' GTP 1111 A 1 HETATM 15 C C4' GTP . . . E 3 59.866 -87.076 52.179 1 137.69 ? C4' GTP 1111 A 1 HETATM 16 O O4' GTP . . . E 3 61.314 -87.234 52.248 1 136.67 ? O4' GTP 1111 A 1 HETATM 17 C C3' GTP . . . E 3 59.573 -87.245 53.706 1 138.07 ? C3' GTP 1111 A 1 HETATM 18 O O3' GTP . . . E 3 58.336 -87.888 54.06 1 107.39 ? O3' GTP 1111 A 1 HETATM 19 C C2' GTP . . . E 3 60.836 -87.943 54.367 1 137.49 ? C2' GTP 1111 A 1 HETATM 20 O O2' GTP . . . E 3 60.573 -89.067 55.187 1 138.2 ? O2' GTP 1111 A 1 HETATM 21 C C1' GTP . . . E 3 61.675 -88.158 53.2 1 136.49 ? C1' GTP 1111 A 1 HETATM 22 N N9 GTP . . . E 3 63.17 -88.209 53.242 1 134.77 ? N9 GTP 1111 A 1 HETATM 23 C C8 GTP . . . E 3 63.983 -87.619 52.288 1 134.19 ? C8 GTP 1111 A 1 HETATM 24 N N7 GTP . . . E 3 65.218 -87.881 52.517 1 133.19 ? N7 GTP 1111 A 1 HETATM 25 C C5 GTP . . . E 3 65.304 -88.646 53.62 1 133.22 ? C5 GTP 1111 A 1 HETATM 26 C C6 GTP . . . E 3 66.39 -89.249 54.312 1 132.68 ? C6 GTP 1111 A 1 HETATM 27 O O6 GTP . . . E 3 67.536 -89.118 53.898 1 133.2 ? O6 GTP 1111 A 1 HETATM 28 N N1 GTP . . . E 3 66.114 -89.989 55.445 1 132.23 ? N1 GTP 1111 A 1 HETATM 29 C C2 GTP . . . E 3 64.81 -90.139 55.899 1 132.24 ? C2 GTP 1111 A 1 HETATM 30 N N2 GTP . . . E 3 64.572 -90.876 57.031 1 131.58 ? N2 GTP 1111 A 1 HETATM 31 N N3 GTP . . . E 3 63.782 -89.591 55.244 1 132.34 ? N3 GTP 1111 A 1 HETATM 32 C C4 GTP . . . E 3 63.983 -88.845 54.127 1 133.47 ? C4 GTP 1111 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #