data_2R7X # _model_server_result.job_id tWTFoSF4KAhs-pBWcABtpQ _model_server_result.datetime_utc '2025-01-06 22:44:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r7x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1111}' # _entry.id 2R7X # _exptl.entry_id 2R7X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.65 _cell.angle_gamma 90 _cell.entry_id 2R7X _cell.length_a 76 _cell.length_b 143.766 _cell.length_c 112.833 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R7X _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 244 n n PG O2G GTP sing 245 n n PG O3G GTP sing 246 n n PG O3B GTP sing 247 n n O2G HOG2 GTP sing 248 n n O3G HOG3 GTP sing 249 n n O3B PB GTP sing 250 n n PB O1B GTP doub 251 n n PB O2B GTP sing 252 n n PB O3A GTP sing 253 n n O2B HOB2 GTP sing 254 n n O3A PA GTP sing 255 n n PA O1A GTP doub 256 n n PA O2A GTP sing 257 n n PA O5' GTP sing 258 n n O2A HOA2 GTP sing 259 n n O5' C5' GTP sing 260 n n C5' C4' GTP sing 261 n n C5' H5' GTP sing 262 n n C5' "H5''" GTP sing 263 n n C4' O4' GTP sing 264 n n C4' C3' GTP sing 265 n n C4' H4' GTP sing 266 n n O4' C1' GTP sing 267 n n C3' O3' GTP sing 268 n n C3' C2' GTP sing 269 n n C3' H3' GTP sing 270 n n O3' HO3' GTP sing 271 n n C2' O2' GTP sing 272 n n C2' C1' GTP sing 273 n n C2' H2' GTP sing 274 n n O2' HO2' GTP sing 275 n n C1' N9 GTP sing 276 n n C1' H1' GTP sing 277 n n N9 C8 GTP sing 278 n y N9 C4 GTP sing 279 n y C8 N7 GTP doub 280 n y C8 H8 GTP sing 281 n n N7 C5 GTP sing 282 n y C5 C6 GTP sing 283 n n C5 C4 GTP doub 284 n y C6 O6 GTP doub 285 n n C6 N1 GTP sing 286 n n N1 C2 GTP sing 287 n n N1 HN1 GTP sing 288 n n C2 N2 GTP sing 289 n n C2 N3 GTP doub 290 n n N2 HN21 GTP sing 291 n n N2 HN22 GTP sing 292 n n N3 C4 GTP sing 293 n n # _atom_sites.entry_id 2R7X _atom_sites.fract_transf_matrix[1][1] 0.013158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000149 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006956 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GTP A 1 1111 1111 GTP GTP . F 3 GTP B 1 1111 1111 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . F 3 25.868 -60.562 10.993 1 150.25 ? PG GTP 1111 B 1 HETATM 2 O O1G GTP . . . F 3 26.921 -60.026 11.697 1 150.28 ? O1G GTP 1111 B 1 HETATM 3 O O2G GTP . . . F 3 25.853 -61.343 12.423 1 149.94 ? O2G GTP 1111 B 1 HETATM 4 O O3G GTP . . . F 3 27.12 -60.131 10.099 1 150.65 ? O3G GTP 1111 B 1 HETATM 5 O O3B GTP . . . F 3 24.641 -59.471 10.682 1 149.39 ? O3B GTP 1111 B 1 HETATM 6 P PB GTP . . . F 3 24.742 -59.168 9.013 1 148.85 ? PB GTP 1111 B 1 HETATM 7 O O1B GTP . . . F 3 26.082 -58.537 8.734 1 149.04 ? O1B GTP 1111 B 1 HETATM 8 O O2B GTP . . . F 3 24.642 -60.569 8.192 1 148.68 ? O2B GTP 1111 B 1 HETATM 9 O O3A GTP . . . F 3 23.66 -58.079 8.4 1 147.66 ? O3A GTP 1111 B 1 HETATM 10 P PA GTP . . . F 3 23.755 -58.146 6.724 1 147.07 ? PA GTP 1111 B 1 HETATM 11 O O1A GTP . . . F 3 25.186 -58.009 6.281 1 147.41 ? O1A GTP 1111 B 1 HETATM 12 O O2A GTP . . . F 3 23.152 -59.548 6.188 1 147.85 ? O2A GTP 1111 B 1 HETATM 13 O O5' GTP . . . F 3 22.924 -56.94 6.074 1 146.41 ? O5' GTP 1111 B 1 HETATM 14 C C5' GTP . . . F 3 22.845 -56.988 4.685 1 143.81 ? C5' GTP 1111 B 1 HETATM 15 C C4' GTP . . . F 3 22.405 -55.712 4.074 1 142.83 ? C4' GTP 1111 B 1 HETATM 16 O O4' GTP . . . F 3 23.843 -55.538 4.004 1 141.8 ? O4' GTP 1111 B 1 HETATM 17 C C3' GTP . . . F 3 22.125 -55.515 2.551 1 143.19 ? C3' GTP 1111 B 1 HETATM 18 O O3' GTP . . . F 3 20.894 -54.848 2.209 1 112.47 ? O3' GTP 1111 B 1 HETATM 19 C C2' GTP . . . F 3 23.391 -54.821 1.896 1 142.63 ? C2' GTP 1111 B 1 HETATM 20 O O2' GTP . . . F 3 23.123 -53.687 1.091 1 143.35 ? O2' GTP 1111 B 1 HETATM 21 C C1' GTP . . . F 3 24.222 -54.621 3.062 1 141.61 ? C1' GTP 1111 B 1 HETATM 22 N N9 GTP . . . F 3 25.712 -54.625 3.054 1 139.9 ? N9 GTP 1111 B 1 HETATM 23 C C8 GTP . . . F 3 26.47 -55.258 4.024 1 139.34 ? C8 GTP 1111 B 1 HETATM 24 N N7 GTP . . . F 3 27.715 -55.045 3.841 1 138.33 ? N7 GTP 1111 B 1 HETATM 25 C C5 GTP . . . F 3 27.873 -54.268 2.757 1 138.36 ? C5 GTP 1111 B 1 HETATM 26 C C6 GTP . . . F 3 29.006 -53.7 2.12 1 137.82 ? C6 GTP 1111 B 1 HETATM 27 O O6 GTP . . . F 3 30.129 -53.892 2.576 1 138.34 ? O6 GTP 1111 B 1 HETATM 28 N N1 GTP . . . F 3 28.809 -52.93 0.995 1 137.36 ? N1 GTP 1111 B 1 HETATM 29 C C2 GTP . . . F 3 27.529 -52.713 0.499 1 137.39 ? C2 GTP 1111 B 1 HETATM 30 N N2 GTP . . . F 3 27.366 -51.945 -0.629 1 136.73 ? N2 GTP 1111 B 1 HETATM 31 N N3 GTP . . . F 3 26.45 -53.234 1.102 1 137.48 ? N3 GTP 1111 B 1 HETATM 32 C C4 GTP . . . F 3 26.579 -53.998 2.217 1 138.6 ? C4 GTP 1111 B 1 # _model_server_stats.io_time_ms 115 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #