data_2R7Y # _model_server_result.job_id t2sVQaLu_O78OWPF7pNglQ _model_server_result.datetime_utc '2024-11-05 00:17:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r7y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 2R7Y # _exptl.entry_id 2R7Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.6 _cell.angle_gamma 90 _cell.entry_id 2R7Y _cell.length_a 80.66 _cell.length_b 37.819 _cell.length_c 61.937 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R7Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DT 2 C DT 2 1_555 B P SDG 3 C SDG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? covale ? covale2 B O3' SDG 3 C SDG 3 1_555 B P DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? covale ? covale3 B O3' DC 5 C DC 5 1_555 B P SDG 6 C SDG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale4 B O3' SDG 6 C SDG 6 1_555 D P PO4 . C PO4 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? metalc ? metalc1 A OP1 C 5 B C 5 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc2 C OD1 ASP 10 A ASP 71 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc3 C OD2 ASP 10 A ASP 71 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc4 C OE2 GLU 48 A GLU 109 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc5 C OD1 ASN 71 A ASN 132 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc6 C OD1 ASP 131 A ASP 192 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc7 F MG MG . A MG 402 1_555 I O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc8 F MG MG . A MG 402 1_555 I O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? hydrog WATSON-CRICK hydrog1 A N1 G 3 B G 3 1_555 B N3 DC 5 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 G 3 B G 3 1_555 B O2 DC 5 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 G 3 B G 3 1_555 B N4 DC 5 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 A 4 B A 4 1_555 B N3 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 A 4 B A 4 1_555 B O4 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 A 6 B A 6 1_555 B N3 DT 2 C DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N6 A 6 B A 6 1_555 B O4 DT 2 C DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2R7Y _atom_sites.fract_transf_matrix[1][1] 0.012398 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001434 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016253 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PO4 C 1 7 7 PO4 PO4 . E 5 MG A 1 401 401 MG MG . F 5 MG A 1 402 402 MG MG . G 6 HOH B 1 12 12 HOH HOH . G 6 HOH B 2 23 23 HOH HOH . G 6 HOH B 3 26 26 HOH HOH . G 6 HOH B 4 43 43 HOH HOH . G 6 HOH B 5 44 44 HOH HOH . G 6 HOH B 6 49 49 HOH HOH . G 6 HOH B 7 59 59 HOH HOH . G 6 HOH B 8 80 80 HOH HOH . G 6 HOH B 9 81 81 HOH HOH . G 6 HOH B 10 88 88 HOH HOH . G 6 HOH B 11 89 89 HOH HOH . G 6 HOH B 12 93 93 HOH HOH . G 6 HOH B 13 95 95 HOH HOH . G 6 HOH B 14 108 108 HOH HOH . G 6 HOH B 15 113 113 HOH HOH . G 6 HOH B 16 142 142 HOH HOH . G 6 HOH B 17 160 160 HOH HOH . G 6 HOH B 18 172 172 HOH HOH . H 6 HOH C 1 45 45 HOH HOH . H 6 HOH C 2 48 48 HOH HOH . H 6 HOH C 3 50 50 HOH HOH . H 6 HOH C 4 51 51 HOH HOH . H 6 HOH C 5 74 74 HOH HOH . H 6 HOH C 6 84 84 HOH HOH . H 6 HOH C 7 85 85 HOH HOH . H 6 HOH C 8 101 101 HOH HOH . H 6 HOH C 9 107 107 HOH HOH . H 6 HOH C 10 121 121 HOH HOH . H 6 HOH C 11 127 127 HOH HOH . H 6 HOH C 12 134 134 HOH HOH . H 6 HOH C 13 141 141 HOH HOH . H 6 HOH C 14 144 144 HOH HOH . H 6 HOH C 15 148 148 HOH HOH . H 6 HOH C 16 161 161 HOH HOH . H 6 HOH C 17 163 163 HOH HOH . H 6 HOH C 18 173 173 HOH HOH . H 6 HOH C 19 178 178 HOH HOH . I 6 HOH A 1 403 403 HOH HOH . I 6 HOH A 2 404 404 HOH HOH . I 6 HOH A 3 405 405 HOH HOH . I 6 HOH A 4 406 406 HOH HOH . I 6 HOH A 5 407 407 HOH HOH . I 6 HOH A 6 408 408 HOH HOH . I 6 HOH A 7 409 409 HOH HOH . I 6 HOH A 8 410 410 HOH HOH . I 6 HOH A 9 411 411 HOH HOH . I 6 HOH A 10 412 412 HOH HOH . I 6 HOH A 11 413 413 HOH HOH . I 6 HOH A 12 414 414 HOH HOH . I 6 HOH A 13 415 415 HOH HOH . I 6 HOH A 14 416 416 HOH HOH . I 6 HOH A 15 417 417 HOH HOH . I 6 HOH A 16 418 418 HOH HOH . I 6 HOH A 17 419 419 HOH HOH . I 6 HOH A 18 420 420 HOH HOH . I 6 HOH A 19 421 421 HOH HOH . I 6 HOH A 20 422 422 HOH HOH . I 6 HOH A 21 423 423 HOH HOH . I 6 HOH A 22 424 424 HOH HOH . I 6 HOH A 23 425 425 HOH HOH . I 6 HOH A 24 426 426 HOH HOH . I 6 HOH A 25 427 427 HOH HOH . I 6 HOH A 26 428 428 HOH HOH . I 6 HOH A 27 429 429 HOH HOH . I 6 HOH A 28 430 430 HOH HOH . I 6 HOH A 29 431 431 HOH HOH . I 6 HOH A 30 432 432 HOH HOH . I 6 HOH A 31 433 433 HOH HOH . I 6 HOH A 32 434 434 HOH HOH . I 6 HOH A 33 435 435 HOH HOH . I 6 HOH A 34 436 436 HOH HOH . I 6 HOH A 35 437 437 HOH HOH . I 6 HOH A 36 438 438 HOH HOH . I 6 HOH A 37 439 439 HOH HOH . I 6 HOH A 38 440 440 HOH HOH . I 6 HOH A 39 441 441 HOH HOH . I 6 HOH A 40 442 442 HOH HOH . I 6 HOH A 41 443 443 HOH HOH . I 6 HOH A 42 444 444 HOH HOH . I 6 HOH A 43 445 445 HOH HOH . I 6 HOH A 44 446 446 HOH HOH . I 6 HOH A 45 447 447 HOH HOH . I 6 HOH A 46 448 448 HOH HOH . I 6 HOH A 47 449 449 HOH HOH . I 6 HOH A 48 450 450 HOH HOH . I 6 HOH A 49 451 451 HOH HOH . I 6 HOH A 50 452 452 HOH HOH . I 6 HOH A 51 453 453 HOH HOH . I 6 HOH A 52 454 454 HOH HOH . I 6 HOH A 53 455 455 HOH HOH . I 6 HOH A 54 456 456 HOH HOH . I 6 HOH A 55 457 457 HOH HOH . I 6 HOH A 56 458 458 HOH HOH . I 6 HOH A 57 459 459 HOH HOH . I 6 HOH A 58 460 460 HOH HOH . I 6 HOH A 59 461 461 HOH HOH . I 6 HOH A 60 462 462 HOH HOH . I 6 HOH A 61 463 463 HOH HOH . I 6 HOH A 62 464 464 HOH HOH . I 6 HOH A 63 465 465 HOH HOH . I 6 HOH A 64 466 466 HOH HOH . I 6 HOH A 65 467 467 HOH HOH . I 6 HOH A 66 468 468 HOH HOH . I 6 HOH A 67 469 469 HOH HOH . I 6 HOH A 68 470 470 HOH HOH . I 6 HOH A 69 471 471 HOH HOH . I 6 HOH A 70 472 472 HOH HOH . I 6 HOH A 71 473 473 HOH HOH . I 6 HOH A 72 474 474 HOH HOH . I 6 HOH A 73 475 475 HOH HOH . I 6 HOH A 74 476 476 HOH HOH . I 6 HOH A 75 477 477 HOH HOH . I 6 HOH A 76 478 478 HOH HOH . I 6 HOH A 77 479 479 HOH HOH . I 6 HOH A 78 480 480 HOH HOH . I 6 HOH A 79 481 481 HOH HOH . I 6 HOH A 80 482 482 HOH HOH . I 6 HOH A 81 483 483 HOH HOH . I 6 HOH A 82 484 484 HOH HOH . I 6 HOH A 83 485 485 HOH HOH . I 6 HOH A 84 486 486 HOH HOH . I 6 HOH A 85 487 487 HOH HOH . I 6 HOH A 86 488 488 HOH HOH . I 6 HOH A 87 489 489 HOH HOH . I 6 HOH A 88 490 490 HOH HOH . I 6 HOH A 89 491 491 HOH HOH . I 6 HOH A 90 492 492 HOH HOH . I 6 HOH A 91 493 493 HOH HOH . I 6 HOH A 92 494 494 HOH HOH . I 6 HOH A 93 495 495 HOH HOH . I 6 HOH A 94 496 496 HOH HOH . I 6 HOH A 95 497 497 HOH HOH . I 6 HOH A 96 498 498 HOH HOH . I 6 HOH A 97 499 499 HOH HOH . I 6 HOH A 98 500 500 HOH HOH . I 6 HOH A 99 501 501 HOH HOH . I 6 HOH A 100 502 502 HOH HOH . I 6 HOH A 101 503 503 HOH HOH . I 6 HOH A 102 504 504 HOH HOH . I 6 HOH A 103 505 505 HOH HOH . I 6 HOH A 104 506 506 HOH HOH . I 6 HOH A 105 507 507 HOH HOH . I 6 HOH A 106 508 508 HOH HOH . I 6 HOH A 107 509 509 HOH HOH . I 6 HOH A 108 510 510 HOH HOH . I 6 HOH A 109 511 511 HOH HOH . I 6 HOH A 110 512 512 HOH HOH . I 6 HOH A 111 513 513 HOH HOH . I 6 HOH A 112 514 514 HOH HOH . I 6 HOH A 113 515 515 HOH HOH . I 6 HOH A 114 516 516 HOH HOH . I 6 HOH A 115 517 517 HOH HOH . I 6 HOH A 116 518 518 HOH HOH . I 6 HOH A 117 519 519 HOH HOH . I 6 HOH A 118 520 520 HOH HOH . I 6 HOH A 119 521 521 HOH HOH . I 6 HOH A 120 522 522 HOH HOH . I 6 HOH A 121 523 523 HOH HOH . I 6 HOH A 122 524 524 HOH HOH . I 6 HOH A 123 525 525 HOH HOH . I 6 HOH A 124 526 526 HOH HOH . I 6 HOH A 125 527 527 HOH HOH . I 6 HOH A 126 528 528 HOH HOH . I 6 HOH A 127 529 529 HOH HOH . I 6 HOH A 128 530 530 HOH HOH . I 6 HOH A 129 531 531 HOH HOH . I 6 HOH A 130 532 532 HOH HOH . I 6 HOH A 131 533 533 HOH HOH . I 6 HOH A 132 534 534 HOH HOH . I 6 HOH A 133 535 535 HOH HOH . I 6 HOH A 134 536 536 HOH HOH . I 6 HOH A 135 537 537 HOH HOH . I 6 HOH A 136 538 538 HOH HOH . I 6 HOH A 137 539 539 HOH HOH . I 6 HOH A 138 540 540 HOH HOH . I 6 HOH A 139 541 541 HOH HOH . I 6 HOH A 140 542 542 HOH HOH . I 6 HOH A 141 543 543 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 13.22 _atom_site.Cartn_y -8.643 _atom_site.Cartn_z 19.765 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #