data_2R86
#
_model_server_result.job_id            LzGJ1o5vLJDVRzGXf-03fw 
_model_server_result.datetime_utc      '2024-11-27 13:03:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2r86 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":400}' 
#
_entry.id    2R86 
#
_exptl.entry_id    2R86 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2R86 
_cell.length_a            122.477 
_cell.length_b            122.477 
_cell.length_c            560.925 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2R86 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,M 1 1,2,3 
B,I,J,K,L,N 2 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 122.477 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 61.2385 106.068193 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLU 98 A GLU 98 1_555 E NA NA . A NA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
metalc ? metalc2 A O ILE 284 A ILE 284 1_555 E NA NA . A NA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? 
metalc ? metalc3 E NA NA . A NA 600 1_555 M O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc4 E NA NA . A NA 600 1_555 M O HOH . A HOH 673 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc5 B O GLU 98 B GLU 98 1_555 K NA NA . B NA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
metalc ? metalc6 B O ILE 284 B ILE 284 1_555 K NA NA . B NA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     2R86 
_atom_sites.fract_transf_matrix[1][1]    0.008165 
_atom_sites.fract_transf_matrix[1][2]    0.004714 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009428 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001783 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PO4 A 1 401 401 PO4 PO4 . 
D 2 PO4 A 1 402 402 PO4 PO4 . 
E 3 NA A 1 600 600 NA NA . 
F 4 ATP A 1 400 400 ATP ATP . 
G 5 MPD A 1 500 500 MPD MPD . 
H 5 MPD A 1 501 501 MPD MPD . 
I 2 PO4 B 1 401 401 PO4 PO4 . 
J 2 PO4 B 1 402 402 PO4 PO4 . 
K 3 NA B 1 600 600 NA NA . 
L 4 ATP B 1 400 400 ATP ATP . 
M 6 HOH A 1 601 1 HOH HOH . 
M 6 HOH A 2 602 2 HOH HOH . 
M 6 HOH A 3 603 3 HOH HOH . 
M 6 HOH A 4 604 4 HOH HOH . 
M 6 HOH A 5 605 5 HOH HOH . 
M 6 HOH A 6 606 6 HOH HOH . 
M 6 HOH A 7 607 7 HOH HOH . 
M 6 HOH A 8 608 8 HOH HOH . 
M 6 HOH A 9 609 10 HOH HOH . 
M 6 HOH A 10 610 11 HOH HOH . 
M 6 HOH A 11 611 13 HOH HOH . 
M 6 HOH A 12 612 14 HOH HOH . 
M 6 HOH A 13 613 15 HOH HOH . 
M 6 HOH A 14 614 16 HOH HOH . 
M 6 HOH A 15 615 17 HOH HOH . 
M 6 HOH A 16 616 20 HOH HOH . 
M 6 HOH A 17 617 21 HOH HOH . 
M 6 HOH A 18 618 22 HOH HOH . 
M 6 HOH A 19 619 23 HOH HOH . 
M 6 HOH A 20 620 24 HOH HOH . 
M 6 HOH A 21 621 25 HOH HOH . 
M 6 HOH A 22 622 26 HOH HOH . 
M 6 HOH A 23 623 28 HOH HOH . 
M 6 HOH A 24 624 29 HOH HOH . 
M 6 HOH A 25 625 30 HOH HOH . 
M 6 HOH A 26 626 31 HOH HOH . 
M 6 HOH A 27 627 33 HOH HOH . 
M 6 HOH A 28 628 34 HOH HOH . 
M 6 HOH A 29 629 37 HOH HOH . 
M 6 HOH A 30 630 38 HOH HOH . 
M 6 HOH A 31 631 40 HOH HOH . 
M 6 HOH A 32 632 41 HOH HOH . 
M 6 HOH A 33 633 44 HOH HOH . 
M 6 HOH A 34 634 45 HOH HOH . 
M 6 HOH A 35 635 46 HOH HOH . 
M 6 HOH A 36 636 47 HOH HOH . 
M 6 HOH A 37 637 52 HOH HOH . 
M 6 HOH A 38 638 53 HOH HOH . 
M 6 HOH A 39 639 54 HOH HOH . 
M 6 HOH A 40 640 57 HOH HOH . 
M 6 HOH A 41 641 58 HOH HOH . 
M 6 HOH A 42 642 59 HOH HOH . 
M 6 HOH A 43 643 60 HOH HOH . 
M 6 HOH A 44 644 61 HOH HOH . 
M 6 HOH A 45 645 62 HOH HOH . 
M 6 HOH A 46 646 63 HOH HOH . 
M 6 HOH A 47 647 66 HOH HOH . 
M 6 HOH A 48 648 69 HOH HOH . 
M 6 HOH A 49 649 70 HOH HOH . 
M 6 HOH A 50 650 71 HOH HOH . 
M 6 HOH A 51 651 72 HOH HOH . 
M 6 HOH A 52 652 73 HOH HOH . 
M 6 HOH A 53 653 74 HOH HOH . 
M 6 HOH A 54 654 75 HOH HOH . 
M 6 HOH A 55 655 76 HOH HOH . 
M 6 HOH A 56 656 77 HOH HOH . 
M 6 HOH A 57 657 79 HOH HOH . 
M 6 HOH A 58 658 85 HOH HOH . 
M 6 HOH A 59 659 86 HOH HOH . 
M 6 HOH A 60 660 88 HOH HOH . 
M 6 HOH A 61 661 93 HOH HOH . 
M 6 HOH A 62 662 94 HOH HOH . 
M 6 HOH A 63 663 95 HOH HOH . 
M 6 HOH A 64 664 96 HOH HOH . 
M 6 HOH A 65 665 97 HOH HOH . 
M 6 HOH A 66 666 98 HOH HOH . 
M 6 HOH A 67 667 99 HOH HOH . 
M 6 HOH A 68 668 100 HOH HOH . 
M 6 HOH A 69 669 101 HOH HOH . 
M 6 HOH A 70 670 106 HOH HOH . 
M 6 HOH A 71 671 108 HOH HOH . 
M 6 HOH A 72 672 109 HOH HOH . 
M 6 HOH A 73 673 110 HOH HOH . 
M 6 HOH A 74 674 111 HOH HOH . 
M 6 HOH A 75 675 112 HOH HOH . 
M 6 HOH A 76 676 113 HOH HOH . 
M 6 HOH A 77 677 114 HOH HOH . 
M 6 HOH A 78 678 116 HOH HOH . 
M 6 HOH A 79 679 117 HOH HOH . 
M 6 HOH A 80 680 118 HOH HOH . 
M 6 HOH A 81 681 119 HOH HOH . 
M 6 HOH A 82 682 121 HOH HOH . 
M 6 HOH A 83 683 122 HOH HOH . 
M 6 HOH A 84 684 124 HOH HOH . 
M 6 HOH A 85 685 125 HOH HOH . 
M 6 HOH A 86 686 126 HOH HOH . 
M 6 HOH A 87 687 127 HOH HOH . 
M 6 HOH A 88 688 128 HOH HOH . 
M 6 HOH A 89 689 129 HOH HOH . 
M 6 HOH A 90 690 130 HOH HOH . 
M 6 HOH A 91 691 132 HOH HOH . 
N 6 HOH B 1 601 9 HOH HOH . 
N 6 HOH B 2 602 12 HOH HOH . 
N 6 HOH B 3 603 18 HOH HOH . 
N 6 HOH B 4 604 19 HOH HOH . 
N 6 HOH B 5 605 27 HOH HOH . 
N 6 HOH B 6 606 32 HOH HOH . 
N 6 HOH B 7 607 35 HOH HOH . 
N 6 HOH B 8 608 36 HOH HOH . 
N 6 HOH B 9 609 39 HOH HOH . 
N 6 HOH B 10 610 42 HOH HOH . 
N 6 HOH B 11 611 43 HOH HOH . 
N 6 HOH B 12 612 48 HOH HOH . 
N 6 HOH B 13 613 49 HOH HOH . 
N 6 HOH B 14 614 50 HOH HOH . 
N 6 HOH B 15 615 51 HOH HOH . 
N 6 HOH B 16 616 55 HOH HOH . 
N 6 HOH B 17 617 56 HOH HOH . 
N 6 HOH B 18 618 64 HOH HOH . 
N 6 HOH B 19 619 65 HOH HOH . 
N 6 HOH B 20 620 67 HOH HOH . 
N 6 HOH B 21 621 68 HOH HOH . 
N 6 HOH B 22 622 78 HOH HOH . 
N 6 HOH B 23 623 80 HOH HOH . 
N 6 HOH B 24 624 81 HOH HOH . 
N 6 HOH B 25 625 82 HOH HOH . 
N 6 HOH B 26 626 83 HOH HOH . 
N 6 HOH B 27 627 84 HOH HOH . 
N 6 HOH B 28 628 87 HOH HOH . 
N 6 HOH B 29 629 89 HOH HOH . 
N 6 HOH B 30 630 90 HOH HOH . 
N 6 HOH B 31 631 91 HOH HOH . 
N 6 HOH B 32 632 92 HOH HOH . 
N 6 HOH B 33 633 102 HOH HOH . 
N 6 HOH B 34 634 103 HOH HOH . 
N 6 HOH B 35 635 104 HOH HOH . 
N 6 HOH B 36 636 105 HOH HOH . 
N 6 HOH B 37 637 107 HOH HOH . 
N 6 HOH B 38 638 115 HOH HOH . 
N 6 HOH B 39 639 120 HOH HOH . 
N 6 HOH B 40 640 123 HOH HOH . 
N 6 HOH B 41 641 131 HOH HOH . 
N 6 HOH B 42 642 133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . L 4 40.338 42.731 89.469 1 102.77 ? PG ATP 400 B 1 
HETATM 2 O O1G ATP . . . L 4 39.63 43.96 88.948 1 102.61 ? O1G ATP 400 B 1 
HETATM 3 O O2G ATP . . . L 4 40.91 42.891 90.861 1 102.73 ? O2G ATP 400 B 1 
HETATM 4 O O3G ATP . . . L 4 39.573 41.446 89.243 1 102.75 ? O3G ATP 400 B 1 
HETATM 5 P PB ATP . . . L 4 42.878 41.617 88.855 1 101.49 ? PB ATP 400 B 1 
HETATM 6 O O1B ATP . . . L 4 43.621 41.376 87.561 1 101.3 ? O1B ATP 400 B 1 
HETATM 7 O O2B ATP . . . L 4 43.621 42.187 90.044 1 101.26 ? O2B ATP 400 B 1 
HETATM 8 O O3B ATP . . . L 4 41.636 42.595 88.516 1 102.16 ? O3B ATP 400 B 1 
HETATM 9 P PA ATP . . . L 4 42.693 39.307 90.489 1 98.16 ? PA ATP 400 B 1 
HETATM 10 O O1A ATP . . . L 4 42.007 37.967 90.372 1 97.97 ? O1A ATP 400 B 1 
HETATM 11 O O2A ATP . . . L 4 42.585 40.092 91.777 1 98.3 ? O2A ATP 400 B 1 
HETATM 12 O O3A ATP . . . L 4 42.161 40.232 89.28 1 99.77 ? O3A ATP 400 B 1 
HETATM 13 O O5' ATP . . . L 4 44.248 39.1 90.121 1 96.93 ? O5' ATP 400 B 1 
HETATM 14 C C5' ATP . . . L 4 45.291 39.369 91.056 1 95.02 ? C5' ATP 400 B 1 
HETATM 15 C C4' ATP . . . L 4 46.356 38.274 91.012 1 94.01 ? C4' ATP 400 B 1 
HETATM 16 O O4' ATP . . . L 4 45.989 37.198 91.878 1 93.33 ? O4' ATP 400 B 1 
HETATM 17 C C3' ATP . . . L 4 46.577 37.687 89.624 1 93.56 ? C3' ATP 400 B 1 
HETATM 18 O O3' ATP . . . L 4 47.969 37.733 89.305 1 93.89 ? O3' ATP 400 B 1 
HETATM 19 C C2' ATP . . . L 4 46.145 36.239 89.715 1 93.07 ? C2' ATP 400 B 1 
HETATM 20 O O2' ATP . . . L 4 47.074 35.382 89.048 1 92.9 ? O2' ATP 400 B 1 
HETATM 21 C C1' ATP . . . L 4 46.114 35.944 91.206 1 92.57 ? C1' ATP 400 B 1 
HETATM 22 N N9 ATP . . . L 4 44.97 35.062 91.546 1 92.16 ? N9 ATP 400 B 1 
HETATM 23 C C8 ATP . . . L 4 43.666 35.32 91.322 1 91.97 ? C8 ATP 400 B 1 
HETATM 24 N N7 ATP . . . L 4 42.883 34.301 91.755 1 91.97 ? N7 ATP 400 B 1 
HETATM 25 C C5 ATP . . . L 4 43.695 33.362 92.273 1 91.92 ? C5 ATP 400 B 1 
HETATM 26 C C6 ATP . . . L 4 43.528 32.029 92.906 1 91.93 ? C6 ATP 400 B 1 
HETATM 27 N N6 ATP . . . L 4 42.3 31.484 93.077 1 92.1 ? N6 ATP 400 B 1 
HETATM 28 N N1 ATP . . . L 4 44.644 31.375 93.307 1 92.03 ? N1 ATP 400 B 1 
HETATM 29 C C2 ATP . . . L 4 45.875 31.905 93.145 1 91.8 ? C2 ATP 400 B 1 
HETATM 30 N N3 ATP . . . L 4 46.101 33.107 92.58 1 91.75 ? N3 ATP 400 B 1 
HETATM 31 C C4 ATP . . . L 4 45.071 33.869 92.132 1 91.9 ? C4 ATP 400 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           804 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           31 
#