data_2R86 # _model_server_result.job_id m9cv9R2TnIRVkUkk8VyCgw _model_server_result.datetime_utc '2024-11-27 12:58:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r86 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":402}' # _entry.id 2R86 # _exptl.entry_id 2R86 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2R86 _cell.length_a 122.477 _cell.length_b 122.477 _cell.length_c 560.925 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R86 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,M 1 1,2,3 B,I,J,K,L,N 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 122.477 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 61.2385 106.068193 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 98 A GLU 98 1_555 E NA NA . A NA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc2 A O ILE 284 A ILE 284 1_555 E NA NA . A NA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc3 E NA NA . A NA 600 1_555 M O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc4 E NA NA . A NA 600 1_555 M O HOH . A HOH 673 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc5 B O GLU 98 B GLU 98 1_555 K NA NA . B NA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc6 B O ILE 284 B ILE 284 1_555 K NA NA . B NA 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 330 n n P O2 PO4 sing 331 n n P O3 PO4 sing 332 n n P O4 PO4 sing 333 n n # _atom_sites.entry_id 2R86 _atom_sites.fract_transf_matrix[1][1] 0.008165 _atom_sites.fract_transf_matrix[1][2] 0.004714 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009428 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001783 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 401 401 PO4 PO4 . D 2 PO4 A 1 402 402 PO4 PO4 . E 3 NA A 1 600 600 NA NA . F 4 ATP A 1 400 400 ATP ATP . G 5 MPD A 1 500 500 MPD MPD . H 5 MPD A 1 501 501 MPD MPD . I 2 PO4 B 1 401 401 PO4 PO4 . J 2 PO4 B 1 402 402 PO4 PO4 . K 3 NA B 1 600 600 NA NA . L 4 ATP B 1 400 400 ATP ATP . M 6 HOH A 1 601 1 HOH HOH . M 6 HOH A 2 602 2 HOH HOH . M 6 HOH A 3 603 3 HOH HOH . M 6 HOH A 4 604 4 HOH HOH . M 6 HOH A 5 605 5 HOH HOH . M 6 HOH A 6 606 6 HOH HOH . M 6 HOH A 7 607 7 HOH HOH . M 6 HOH A 8 608 8 HOH HOH . M 6 HOH A 9 609 10 HOH HOH . M 6 HOH A 10 610 11 HOH HOH . M 6 HOH A 11 611 13 HOH HOH . M 6 HOH A 12 612 14 HOH HOH . M 6 HOH A 13 613 15 HOH HOH . M 6 HOH A 14 614 16 HOH HOH . M 6 HOH A 15 615 17 HOH HOH . M 6 HOH A 16 616 20 HOH HOH . M 6 HOH A 17 617 21 HOH HOH . M 6 HOH A 18 618 22 HOH HOH . M 6 HOH A 19 619 23 HOH HOH . M 6 HOH A 20 620 24 HOH HOH . M 6 HOH A 21 621 25 HOH HOH . M 6 HOH A 22 622 26 HOH HOH . M 6 HOH A 23 623 28 HOH HOH . M 6 HOH A 24 624 29 HOH HOH . M 6 HOH A 25 625 30 HOH HOH . M 6 HOH A 26 626 31 HOH HOH . M 6 HOH A 27 627 33 HOH HOH . M 6 HOH A 28 628 34 HOH HOH . M 6 HOH A 29 629 37 HOH HOH . M 6 HOH A 30 630 38 HOH HOH . M 6 HOH A 31 631 40 HOH HOH . M 6 HOH A 32 632 41 HOH HOH . M 6 HOH A 33 633 44 HOH HOH . M 6 HOH A 34 634 45 HOH HOH . M 6 HOH A 35 635 46 HOH HOH . M 6 HOH A 36 636 47 HOH HOH . M 6 HOH A 37 637 52 HOH HOH . M 6 HOH A 38 638 53 HOH HOH . M 6 HOH A 39 639 54 HOH HOH . M 6 HOH A 40 640 57 HOH HOH . M 6 HOH A 41 641 58 HOH HOH . M 6 HOH A 42 642 59 HOH HOH . M 6 HOH A 43 643 60 HOH HOH . M 6 HOH A 44 644 61 HOH HOH . M 6 HOH A 45 645 62 HOH HOH . M 6 HOH A 46 646 63 HOH HOH . M 6 HOH A 47 647 66 HOH HOH . M 6 HOH A 48 648 69 HOH HOH . M 6 HOH A 49 649 70 HOH HOH . M 6 HOH A 50 650 71 HOH HOH . M 6 HOH A 51 651 72 HOH HOH . M 6 HOH A 52 652 73 HOH HOH . M 6 HOH A 53 653 74 HOH HOH . M 6 HOH A 54 654 75 HOH HOH . M 6 HOH A 55 655 76 HOH HOH . M 6 HOH A 56 656 77 HOH HOH . M 6 HOH A 57 657 79 HOH HOH . M 6 HOH A 58 658 85 HOH HOH . M 6 HOH A 59 659 86 HOH HOH . M 6 HOH A 60 660 88 HOH HOH . M 6 HOH A 61 661 93 HOH HOH . M 6 HOH A 62 662 94 HOH HOH . M 6 HOH A 63 663 95 HOH HOH . M 6 HOH A 64 664 96 HOH HOH . M 6 HOH A 65 665 97 HOH HOH . M 6 HOH A 66 666 98 HOH HOH . M 6 HOH A 67 667 99 HOH HOH . M 6 HOH A 68 668 100 HOH HOH . M 6 HOH A 69 669 101 HOH HOH . M 6 HOH A 70 670 106 HOH HOH . M 6 HOH A 71 671 108 HOH HOH . M 6 HOH A 72 672 109 HOH HOH . M 6 HOH A 73 673 110 HOH HOH . M 6 HOH A 74 674 111 HOH HOH . M 6 HOH A 75 675 112 HOH HOH . M 6 HOH A 76 676 113 HOH HOH . M 6 HOH A 77 677 114 HOH HOH . M 6 HOH A 78 678 116 HOH HOH . M 6 HOH A 79 679 117 HOH HOH . M 6 HOH A 80 680 118 HOH HOH . M 6 HOH A 81 681 119 HOH HOH . M 6 HOH A 82 682 121 HOH HOH . M 6 HOH A 83 683 122 HOH HOH . M 6 HOH A 84 684 124 HOH HOH . M 6 HOH A 85 685 125 HOH HOH . M 6 HOH A 86 686 126 HOH HOH . M 6 HOH A 87 687 127 HOH HOH . M 6 HOH A 88 688 128 HOH HOH . M 6 HOH A 89 689 129 HOH HOH . M 6 HOH A 90 690 130 HOH HOH . M 6 HOH A 91 691 132 HOH HOH . N 6 HOH B 1 601 9 HOH HOH . N 6 HOH B 2 602 12 HOH HOH . N 6 HOH B 3 603 18 HOH HOH . N 6 HOH B 4 604 19 HOH HOH . N 6 HOH B 5 605 27 HOH HOH . N 6 HOH B 6 606 32 HOH HOH . N 6 HOH B 7 607 35 HOH HOH . N 6 HOH B 8 608 36 HOH HOH . N 6 HOH B 9 609 39 HOH HOH . N 6 HOH B 10 610 42 HOH HOH . N 6 HOH B 11 611 43 HOH HOH . N 6 HOH B 12 612 48 HOH HOH . N 6 HOH B 13 613 49 HOH HOH . N 6 HOH B 14 614 50 HOH HOH . N 6 HOH B 15 615 51 HOH HOH . N 6 HOH B 16 616 55 HOH HOH . N 6 HOH B 17 617 56 HOH HOH . N 6 HOH B 18 618 64 HOH HOH . N 6 HOH B 19 619 65 HOH HOH . N 6 HOH B 20 620 67 HOH HOH . N 6 HOH B 21 621 68 HOH HOH . N 6 HOH B 22 622 78 HOH HOH . N 6 HOH B 23 623 80 HOH HOH . N 6 HOH B 24 624 81 HOH HOH . N 6 HOH B 25 625 82 HOH HOH . N 6 HOH B 26 626 83 HOH HOH . N 6 HOH B 27 627 84 HOH HOH . N 6 HOH B 28 628 87 HOH HOH . N 6 HOH B 29 629 89 HOH HOH . N 6 HOH B 30 630 90 HOH HOH . N 6 HOH B 31 631 91 HOH HOH . N 6 HOH B 32 632 92 HOH HOH . N 6 HOH B 33 633 102 HOH HOH . N 6 HOH B 34 634 103 HOH HOH . N 6 HOH B 35 635 104 HOH HOH . N 6 HOH B 36 636 105 HOH HOH . N 6 HOH B 37 637 107 HOH HOH . N 6 HOH B 38 638 115 HOH HOH . N 6 HOH B 39 639 120 HOH HOH . N 6 HOH B 40 640 123 HOH HOH . N 6 HOH B 41 641 131 HOH HOH . N 6 HOH B 42 642 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . J 2 45.691 42.278 78.406 1 46.59 ? P PO4 402 B 1 HETATM 2 O O1 PO4 . . . J 2 46.485 43.53 78.698 1 46.19 ? O1 PO4 402 B 1 HETATM 3 O O2 PO4 . . . J 2 45.464 42.135 76.922 1 47.17 ? O2 PO4 402 B 1 HETATM 4 O O3 PO4 . . . J 2 46.465 41.097 78.929 1 46.98 ? O3 PO4 402 B 1 HETATM 5 O O4 PO4 . . . J 2 44.324 42.335 79.049 1 47.68 ? O4 PO4 402 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 685 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #