data_2R8V # _model_server_result.job_id ZVfyXTB4R254mcsZqxelZw _model_server_result.datetime_utc '2024-10-18 23:34:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r8v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 2R8V # _exptl.entry_id 2R8V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2R8V _cell.length_a 98.661 _cell.length_b 98.661 _cell.length_c 89.755 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R8V _symmetry.cell_setting ? _symmetry.Int_Tables_number 149 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 1 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_666 -y+1,-x+1,-z+1 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 49.3305 85.442932 89.755 3 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 98.661 0 0 4 'crystal symmetry operation' 6_556 x,x-y,-z+1 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 89.755 5 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 49.3305 85.442932 0 6 'crystal symmetry operation' 5_656 -x+y+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 98.661 0 89.755 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 2R8V _atom_sites.fract_transf_matrix[1][1] 0.010136 _atom_sites.fract_transf_matrix[1][2] 0.005852 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACO A 1 601 601 ACO ACO . C 3 HOH A 1 437 437 HOH HOH . C 3 HOH A 2 438 438 HOH HOH . C 3 HOH A 3 439 439 HOH HOH . C 3 HOH A 4 440 440 HOH HOH . C 3 HOH A 5 441 441 HOH HOH . C 3 HOH A 6 442 442 HOH HOH . C 3 HOH A 7 443 443 HOH HOH . C 3 HOH A 8 444 444 HOH HOH . C 3 HOH A 9 445 445 HOH HOH . C 3 HOH A 10 446 446 HOH HOH . C 3 HOH A 11 447 447 HOH HOH . C 3 HOH A 12 448 448 HOH HOH . C 3 HOH A 13 449 449 HOH HOH . C 3 HOH A 14 450 450 HOH HOH . C 3 HOH A 15 451 451 HOH HOH . C 3 HOH A 16 452 452 HOH HOH . C 3 HOH A 17 453 453 HOH HOH . C 3 HOH A 18 454 454 HOH HOH . C 3 HOH A 19 455 455 HOH HOH . C 3 HOH A 20 456 456 HOH HOH . C 3 HOH A 21 457 457 HOH HOH . C 3 HOH A 22 458 458 HOH HOH . C 3 HOH A 23 459 459 HOH HOH . C 3 HOH A 24 460 460 HOH HOH . C 3 HOH A 25 461 461 HOH HOH . C 3 HOH A 26 462 462 HOH HOH . C 3 HOH A 27 463 463 HOH HOH . C 3 HOH A 28 464 464 HOH HOH . C 3 HOH A 29 465 465 HOH HOH . C 3 HOH A 30 466 466 HOH HOH . C 3 HOH A 31 467 467 HOH HOH . C 3 HOH A 32 468 468 HOH HOH . C 3 HOH A 33 469 469 HOH HOH . C 3 HOH A 34 470 470 HOH HOH . C 3 HOH A 35 471 471 HOH HOH . C 3 HOH A 36 472 472 HOH HOH . C 3 HOH A 37 473 473 HOH HOH . C 3 HOH A 38 474 474 HOH HOH . C 3 HOH A 39 475 475 HOH HOH . C 3 HOH A 40 476 476 HOH HOH . C 3 HOH A 41 477 477 HOH HOH . C 3 HOH A 42 478 478 HOH HOH . C 3 HOH A 43 479 479 HOH HOH . C 3 HOH A 44 480 480 HOH HOH . C 3 HOH A 45 481 481 HOH HOH . C 3 HOH A 46 482 482 HOH HOH . C 3 HOH A 47 483 483 HOH HOH . C 3 HOH A 48 484 484 HOH HOH . C 3 HOH A 49 485 485 HOH HOH . C 3 HOH A 50 486 486 HOH HOH . C 3 HOH A 51 487 487 HOH HOH . C 3 HOH A 52 488 488 HOH HOH . C 3 HOH A 53 489 489 HOH HOH . C 3 HOH A 54 490 490 HOH HOH . C 3 HOH A 55 491 491 HOH HOH . C 3 HOH A 56 492 492 HOH HOH . C 3 HOH A 57 493 493 HOH HOH . C 3 HOH A 58 494 494 HOH HOH . C 3 HOH A 59 495 495 HOH HOH . C 3 HOH A 60 496 496 HOH HOH . C 3 HOH A 61 497 497 HOH HOH . C 3 HOH A 62 498 498 HOH HOH . C 3 HOH A 63 499 499 HOH HOH . C 3 HOH A 64 500 500 HOH HOH . C 3 HOH A 65 501 501 HOH HOH . C 3 HOH A 66 502 502 HOH HOH . C 3 HOH A 67 503 503 HOH HOH . C 3 HOH A 68 504 504 HOH HOH . C 3 HOH A 69 505 505 HOH HOH . C 3 HOH A 70 506 506 HOH HOH . C 3 HOH A 71 507 507 HOH HOH . C 3 HOH A 72 508 508 HOH HOH . C 3 HOH A 73 509 509 HOH HOH . C 3 HOH A 74 510 510 HOH HOH . C 3 HOH A 75 511 511 HOH HOH . C 3 HOH A 76 512 512 HOH HOH . C 3 HOH A 77 513 513 HOH HOH . C 3 HOH A 78 514 514 HOH HOH . C 3 HOH A 79 515 515 HOH HOH . C 3 HOH A 80 516 516 HOH HOH . C 3 HOH A 81 517 517 HOH HOH . C 3 HOH A 82 518 518 HOH HOH . C 3 HOH A 83 519 519 HOH HOH . C 3 HOH A 84 520 520 HOH HOH . C 3 HOH A 85 521 521 HOH HOH . C 3 HOH A 86 522 522 HOH HOH . C 3 HOH A 87 523 523 HOH HOH . C 3 HOH A 88 524 524 HOH HOH . C 3 HOH A 89 525 525 HOH HOH . C 3 HOH A 90 526 526 HOH HOH . C 3 HOH A 91 527 527 HOH HOH . C 3 HOH A 92 528 528 HOH HOH . C 3 HOH A 93 529 529 HOH HOH . C 3 HOH A 94 530 530 HOH HOH . C 3 HOH A 95 531 531 HOH HOH . C 3 HOH A 96 532 532 HOH HOH . C 3 HOH A 97 533 533 HOH HOH . C 3 HOH A 98 534 534 HOH HOH . C 3 HOH A 99 535 535 HOH HOH . C 3 HOH A 100 536 536 HOH HOH . C 3 HOH A 101 537 537 HOH HOH . C 3 HOH A 102 538 538 HOH HOH . C 3 HOH A 103 539 539 HOH HOH . C 3 HOH A 104 540 540 HOH HOH . C 3 HOH A 105 541 541 HOH HOH . C 3 HOH A 106 542 542 HOH HOH . C 3 HOH A 107 543 543 HOH HOH . C 3 HOH A 108 544 544 HOH HOH . C 3 HOH A 109 545 545 HOH HOH . C 3 HOH A 110 546 546 HOH HOH . C 3 HOH A 111 547 547 HOH HOH . C 3 HOH A 112 548 548 HOH HOH . C 3 HOH A 113 549 549 HOH HOH . C 3 HOH A 114 550 550 HOH HOH . C 3 HOH A 115 551 551 HOH HOH . C 3 HOH A 116 552 552 HOH HOH . C 3 HOH A 117 553 553 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . B 2 40.147 -0.141 20.786 1 34.72 ? N1A ACO 601 A 1 HETATM 2 C C2A ACO . . . B 2 39.414 0.484 21.704 1 38.64 ? C2A ACO 601 A 1 HETATM 3 N N3A ACO . . . B 2 39.141 1.782 21.596 1 41.34 ? N3A ACO 601 A 1 HETATM 4 C C4A ACO . . . B 2 39.71 2.483 20.606 1 35.85 ? C4A ACO 601 A 1 HETATM 5 C C5A ACO . . . B 2 40.502 1.864 19.655 1 35.49 ? C5A ACO 601 A 1 HETATM 6 C C6A ACO . . . B 2 40.744 0.511 19.769 1 39.89 ? C6A ACO 601 A 1 HETATM 7 N N6A ACO . . . B 2 41.55 -0.054 18.852 1 36.22 ? N6A ACO 601 A 1 HETATM 8 N N7A ACO . . . B 2 40.92 2.768 18.776 1 39.73 ? N7A ACO 601 A 1 HETATM 9 C C8A ACO . . . B 2 40.419 3.951 19.155 1 44.8 ? C8A ACO 601 A 1 HETATM 10 N N9A ACO . . . B 2 39.645 3.756 20.236 1 48.04 ? N9A ACO 601 A 1 HETATM 11 C C1B ACO . . . B 2 38.968 4.806 21.004 1 42.92 ? C1B ACO 601 A 1 HETATM 12 C C2B ACO . . . B 2 40.051 5.863 21.061 1 43.4 ? C2B ACO 601 A 1 HETATM 13 O O2B ACO . . . B 2 40.859 5.567 22.202 1 38.27 ? O2B ACO 601 A 1 HETATM 14 C C3B ACO . . . B 2 39.156 7.03 21.414 1 42.61 ? C3B ACO 601 A 1 HETATM 15 O O3B ACO . . . B 2 38.916 6.816 22.809 1 49.37 ? O3B ACO 601 A 1 HETATM 16 P P3B ACO . . . B 2 38.169 7.919 23.693 1 47.51 ? P3B ACO 601 A 1 HETATM 17 O O7A ACO . . . B 2 38.542 7.456 25.202 1 52.49 ? O7A ACO 601 A 1 HETATM 18 O O8A ACO . . . B 2 38.929 9.265 23.336 1 47.65 ? O8A ACO 601 A 1 HETATM 19 O O9A ACO . . . B 2 36.697 7.904 23.466 1 48.58 ? O9A ACO 601 A 1 HETATM 20 C C4B ACO . . . B 2 37.874 6.768 20.612 1 38.21 ? C4B ACO 601 A 1 HETATM 21 O O4B ACO . . . B 2 37.977 5.409 20.178 1 41.67 ? O4B ACO 601 A 1 HETATM 22 C C5B ACO . . . B 2 37.697 7.583 19.296 1 40.12 ? C5B ACO 601 A 1 HETATM 23 O O5B ACO . . . B 2 36.346 7.39 18.805 1 29.52 ? O5B ACO 601 A 1 HETATM 24 P P1A ACO . . . B 2 35.945 8.175 17.536 1 35.02 ? P1A ACO 601 A 1 HETATM 25 O O1A ACO . . . B 2 34.454 8.172 17.418 1 28.21 ? O1A ACO 601 A 1 HETATM 26 O O2A ACO . . . B 2 36.663 9.46 17.558 1 31.3 ? O2A ACO 601 A 1 HETATM 27 O O3A ACO . . . B 2 36.584 7.32 16.334 1 29.21 ? O3A ACO 601 A 1 HETATM 28 P P2A ACO . . . B 2 37.859 7.771 15.498 1 30.56 ? P2A ACO 601 A 1 HETATM 29 O O4A ACO . . . B 2 39.108 7.928 16.233 1 25.54 ? O4A ACO 601 A 1 HETATM 30 O O5A ACO . . . B 2 37.472 8.823 14.542 1 26.28 ? O5A ACO 601 A 1 HETATM 31 O O6A ACO . . . B 2 38.168 6.4 14.761 1 33.34 ? O6A ACO 601 A 1 HETATM 32 C CBP ACO . . . B 2 38.596 3.99 14.555 1 31.27 ? CBP ACO 601 A 1 HETATM 33 C CCP ACO . . . B 2 37.918 5.112 15.368 1 31.07 ? CCP ACO 601 A 1 HETATM 34 C CDP ACO . . . B 2 38.051 3.941 13.137 1 24.48 ? CDP ACO 601 A 1 HETATM 35 C CEP ACO . . . B 2 38.251 2.671 15.196 1 28.48 ? CEP ACO 601 A 1 HETATM 36 C CAP ACO . . . B 2 40.115 4.148 14.616 1 30.33 ? CAP ACO 601 A 1 HETATM 37 O OAP ACO . . . B 2 40.349 5.542 14.571 1 46.72 ? OAP ACO 601 A 1 HETATM 38 C C9P ACO . . . B 2 40.851 3.45 13.466 1 33.86 ? C9P ACO 601 A 1 HETATM 39 O O9P ACO . . . B 2 40.899 3.885 12.311 1 26.91 ? O9P ACO 601 A 1 HETATM 40 N N8P ACO . . . B 2 41.486 2.356 13.855 1 31.52 ? N8P ACO 601 A 1 HETATM 41 C C7P ACO . . . B 2 42.195 1.527 12.869 1 33.49 ? C7P ACO 601 A 1 HETATM 42 C C6P ACO . . . B 2 41.207 1.116 11.784 1 26.66 ? C6P ACO 601 A 1 HETATM 43 C C5P ACO . . . B 2 40.306 0.06 12.424 1 28.24 ? C5P ACO 601 A 1 HETATM 44 O O5P ACO . . . B 2 40.596 -0.623 13.412 1 27.13 ? O5P ACO 601 A 1 HETATM 45 N N4P ACO . . . B 2 39.088 0.07 11.93 1 24.08 ? N4P ACO 601 A 1 HETATM 46 C C3P ACO . . . B 2 38.135 -0.924 12.432 1 22.4 ? C3P ACO 601 A 1 HETATM 47 C C2P ACO . . . B 2 38.295 -2.111 11.475 1 20.24 ? C2P ACO 601 A 1 HETATM 48 S S1P ACO . . . B 2 37.228 -3.51 11.936 1 25.35 ? S1P ACO 601 A 1 HETATM 49 C C ACO . . . B 2 35.74 -3.099 11.17 1 25.46 ? C ACO 601 A 1 HETATM 50 O O ACO . . . B 2 35.757 -2.248 10.274 1 27.3 ? O ACO 601 A 1 HETATM 51 C CH3 ACO . . . B 2 34.656 -3.914 11.431 1 20.14 ? CH3 ACO 601 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 51 #