data_2R96 # _model_server_result.job_id zO7FxijcJYUArH_ZasKVcQ _model_server_result.datetime_utc '2024-10-19 16:32:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r96 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":198}' # _entry.id 2R96 # _exptl.entry_id 2R96 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2R96 _cell.length_a 94.35 _cell.length_b 94.35 _cell.length_c 175.38 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R96 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 87.69 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 L N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 79 n n N1 C10 FMN doub 80 n n C2 O2 FMN doub 81 n n C2 N3 FMN sing 82 n n N3 C4 FMN sing 83 n n N3 HN3 FMN sing 84 n n C4 O4 FMN doub 85 n n C4 C4A FMN sing 86 n n C4A N5 FMN doub 87 n n C4A C10 FMN sing 88 n n N5 C5A FMN sing 89 n n C5A C6 FMN doub 90 n y C5A C9A FMN sing 91 n y C6 C7 FMN sing 92 n y C6 H6 FMN sing 93 n n C7 C7M FMN sing 94 n n C7 C8 FMN doub 95 n y C7M HM71 FMN sing 96 n n C7M HM72 FMN sing 97 n n C7M HM73 FMN sing 98 n n C8 C8M FMN sing 99 n n C8 C9 FMN sing 100 n y C8M HM81 FMN sing 101 n n C8M HM82 FMN sing 102 n n C8M HM83 FMN sing 103 n n C9 C9A FMN doub 104 n y C9 H9 FMN sing 105 n n C9A N10 FMN sing 106 n n N10 C10 FMN sing 107 n n N10 C1' FMN sing 108 n n C1' C2' FMN sing 109 n n C1' "H1'1" FMN sing 110 n n C1' "H1'2" FMN sing 111 n n C2' O2' FMN sing 112 n n C2' C3' FMN sing 113 n n C2' H2' FMN sing 114 n n O2' HO2' FMN sing 115 n n C3' O3' FMN sing 116 n n C3' C4' FMN sing 117 n n C3' H3' FMN sing 118 n n O3' HO3' FMN sing 119 n n C4' O4' FMN sing 120 n n C4' C5' FMN sing 121 n n C4' H4' FMN sing 122 n n O4' HO4' FMN sing 123 n n C5' O5' FMN sing 124 n n C5' "H5'1" FMN sing 125 n n C5' "H5'2" FMN sing 126 n n O5' P FMN sing 127 n n P O1P FMN doub 128 n n P O2P FMN sing 129 n n P O3P FMN sing 130 n n O2P HOP2 FMN sing 131 n n O3P HOP3 FMN sing 132 n n # _atom_sites.entry_id 2R96 _atom_sites.fract_transf_matrix[1][1] 0.010599 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010599 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 198 198 FMN FMN . D 3 EDO A 1 199 199 EDO EDO . E 3 EDO A 1 200 200 EDO EDO . F 3 EDO A 1 201 201 EDO EDO . G 3 EDO A 1 202 202 EDO EDO . H 3 EDO A 1 203 203 EDO EDO . I 3 EDO A 1 204 204 EDO EDO . J 3 EDO A 1 205 205 EDO EDO . K 3 EDO A 1 206 206 EDO EDO . L 2 FMN C 1 198 198 FMN FMN . M 3 EDO C 1 199 199 EDO EDO . N 3 EDO C 1 200 200 EDO EDO . O 3 EDO C 1 201 201 EDO EDO . P 3 EDO C 1 202 202 EDO EDO . Q 3 EDO C 1 203 203 EDO EDO . R 3 EDO C 1 204 204 EDO EDO . S 4 HOH A 1 207 207 HOH HOH . S 4 HOH A 2 208 208 HOH HOH . S 4 HOH A 3 209 209 HOH HOH . S 4 HOH A 4 210 210 HOH HOH . S 4 HOH A 5 211 211 HOH HOH . S 4 HOH A 6 212 212 HOH HOH . S 4 HOH A 7 213 213 HOH HOH . S 4 HOH A 8 214 214 HOH HOH . S 4 HOH A 9 215 215 HOH HOH . S 4 HOH A 10 216 216 HOH HOH . S 4 HOH A 11 217 217 HOH HOH . S 4 HOH A 12 218 218 HOH HOH . S 4 HOH A 13 219 219 HOH HOH . S 4 HOH A 14 220 220 HOH HOH . S 4 HOH A 15 221 221 HOH HOH . S 4 HOH A 16 222 222 HOH HOH . S 4 HOH A 17 223 223 HOH HOH . S 4 HOH A 18 224 224 HOH HOH . S 4 HOH A 19 225 225 HOH HOH . S 4 HOH A 20 226 226 HOH HOH . S 4 HOH A 21 227 227 HOH HOH . S 4 HOH A 22 228 228 HOH HOH . S 4 HOH A 23 229 229 HOH HOH . S 4 HOH A 24 230 230 HOH HOH . S 4 HOH A 25 231 231 HOH HOH . S 4 HOH A 26 232 232 HOH HOH . S 4 HOH A 27 233 233 HOH HOH . S 4 HOH A 28 234 234 HOH HOH . S 4 HOH A 29 235 235 HOH HOH . S 4 HOH A 30 236 236 HOH HOH . S 4 HOH A 31 237 237 HOH HOH . S 4 HOH A 32 238 238 HOH HOH . S 4 HOH A 33 239 239 HOH HOH . S 4 HOH A 34 240 240 HOH HOH . S 4 HOH A 35 241 241 HOH HOH . S 4 HOH A 36 242 242 HOH HOH . S 4 HOH A 37 243 243 HOH HOH . S 4 HOH A 38 244 244 HOH HOH . S 4 HOH A 39 245 245 HOH HOH . S 4 HOH A 40 246 246 HOH HOH . S 4 HOH A 41 247 247 HOH HOH . S 4 HOH A 42 248 248 HOH HOH . S 4 HOH A 43 249 249 HOH HOH . S 4 HOH A 44 250 250 HOH HOH . S 4 HOH A 45 251 251 HOH HOH . S 4 HOH A 46 252 252 HOH HOH . S 4 HOH A 47 253 253 HOH HOH . S 4 HOH A 48 254 254 HOH HOH . S 4 HOH A 49 255 255 HOH HOH . S 4 HOH A 50 256 256 HOH HOH . S 4 HOH A 51 257 257 HOH HOH . S 4 HOH A 52 258 258 HOH HOH . S 4 HOH A 53 259 259 HOH HOH . S 4 HOH A 54 260 260 HOH HOH . S 4 HOH A 55 261 261 HOH HOH . T 4 HOH C 1 205 205 HOH HOH . T 4 HOH C 2 206 206 HOH HOH . T 4 HOH C 3 207 207 HOH HOH . T 4 HOH C 4 208 208 HOH HOH . T 4 HOH C 5 209 209 HOH HOH . T 4 HOH C 6 210 210 HOH HOH . T 4 HOH C 7 211 211 HOH HOH . T 4 HOH C 8 212 212 HOH HOH . T 4 HOH C 9 213 213 HOH HOH . T 4 HOH C 10 214 214 HOH HOH . T 4 HOH C 11 215 215 HOH HOH . T 4 HOH C 12 216 216 HOH HOH . T 4 HOH C 13 217 217 HOH HOH . T 4 HOH C 14 218 218 HOH HOH . T 4 HOH C 15 219 219 HOH HOH . T 4 HOH C 16 220 220 HOH HOH . T 4 HOH C 17 221 221 HOH HOH . T 4 HOH C 18 222 222 HOH HOH . T 4 HOH C 19 223 223 HOH HOH . T 4 HOH C 20 224 224 HOH HOH . T 4 HOH C 21 225 225 HOH HOH . T 4 HOH C 22 226 226 HOH HOH . T 4 HOH C 23 227 227 HOH HOH . T 4 HOH C 24 228 228 HOH HOH . T 4 HOH C 25 229 229 HOH HOH . T 4 HOH C 26 230 230 HOH HOH . T 4 HOH C 27 231 231 HOH HOH . T 4 HOH C 28 232 232 HOH HOH . T 4 HOH C 29 233 233 HOH HOH . T 4 HOH C 30 234 234 HOH HOH . T 4 HOH C 31 235 235 HOH HOH . T 4 HOH C 32 236 236 HOH HOH . T 4 HOH C 33 237 237 HOH HOH . T 4 HOH C 34 238 238 HOH HOH . T 4 HOH C 35 239 239 HOH HOH . T 4 HOH C 36 240 240 HOH HOH . T 4 HOH C 37 241 241 HOH HOH . T 4 HOH C 38 242 242 HOH HOH . T 4 HOH C 39 243 243 HOH HOH . T 4 HOH C 40 244 244 HOH HOH . T 4 HOH C 41 245 245 HOH HOH . T 4 HOH C 42 246 246 HOH HOH . T 4 HOH C 43 247 247 HOH HOH . T 4 HOH C 44 248 248 HOH HOH . T 4 HOH C 45 249 249 HOH HOH . T 4 HOH C 46 250 250 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . L 2 11.125 -25.171 37.827 1 24.27 ? N1 FMN 198 C 1 HETATM 2 C C2 FMN . . . L 2 11.721 -24.853 39.006 1 26.05 ? C2 FMN 198 C 1 HETATM 3 O O2 FMN . . . L 2 11.671 -23.69 39.361 1 24.21 ? O2 FMN 198 C 1 HETATM 4 N N3 FMN . . . L 2 12.368 -25.813 39.776 1 27.52 ? N3 FMN 198 C 1 HETATM 5 C C4 FMN . . . L 2 12.394 -27.157 39.422 1 28.75 ? C4 FMN 198 C 1 HETATM 6 O O4 FMN . . . L 2 12.083 -28.001 40.322 1 32.48 ? O4 FMN 198 C 1 HETATM 7 C C4A FMN . . . L 2 11.816 -27.462 38.195 1 26.29 ? C4A FMN 198 C 1 HETATM 8 N N5 FMN . . . L 2 11.838 -28.777 37.778 1 25.47 ? N5 FMN 198 C 1 HETATM 9 C C5A FMN . . . L 2 11.224 -29.132 36.584 1 26.69 ? C5A FMN 198 C 1 HETATM 10 C C6 FMN . . . L 2 11.228 -30.458 36.155 1 26.43 ? C6 FMN 198 C 1 HETATM 11 C C7 FMN . . . L 2 10.622 -30.841 34.951 1 26.64 ? C7 FMN 198 C 1 HETATM 12 C C7M FMN . . . L 2 10.062 -32.253 34.859 1 25.6 ? C7M FMN 198 C 1 HETATM 13 C C8 FMN . . . L 2 10.006 -29.865 34.155 1 26.85 ? C8 FMN 198 C 1 HETATM 14 C C8M FMN . . . L 2 9.186 -30.285 32.951 1 27.41 ? C8M FMN 198 C 1 HETATM 15 C C9 FMN . . . L 2 9.991 -28.537 34.589 1 25.77 ? C9 FMN 198 C 1 HETATM 16 C C9A FMN . . . L 2 10.602 -28.163 35.787 1 26.37 ? C9A FMN 198 C 1 HETATM 17 N N10 FMN . . . L 2 10.601 -26.842 36.204 1 26.52 ? N10 FMN 198 C 1 HETATM 18 C C10 FMN . . . L 2 11.167 -26.492 37.421 1 25.99 ? C10 FMN 198 C 1 HETATM 19 C C1' FMN . . . L 2 10.241 -25.745 35.225 1 26.93 ? C1' FMN 198 C 1 HETATM 20 C C2' FMN . . . L 2 11.183 -25.474 34.052 1 27.65 ? C2' FMN 198 C 1 HETATM 21 O O2' FMN . . . L 2 12.499 -25.117 34.445 1 26.58 ? O2' FMN 198 C 1 HETATM 22 C C3' FMN . . . L 2 10.552 -24.287 33.324 1 27.79 ? C3' FMN 198 C 1 HETATM 23 O O3' FMN . . . L 2 9.248 -24.613 32.881 1 29.45 ? O3' FMN 198 C 1 HETATM 24 C C4' FMN . . . L 2 11.44 -23.774 32.199 1 26.66 ? C4' FMN 198 C 1 HETATM 25 O O4' FMN . . . L 2 12.211 -22.756 32.768 1 26.54 ? O4' FMN 198 C 1 HETATM 26 C C5' FMN . . . L 2 10.669 -23.186 31.028 1 27 ? C5' FMN 198 C 1 HETATM 27 O O5' FMN . . . L 2 11.578 -22.61 30.126 1 26.4 ? O5' FMN 198 C 1 HETATM 28 P P FMN . . . L 2 11.463 -22.862 28.55 1 26.47 ? P FMN 198 C 1 HETATM 29 O O1P FMN . . . L 2 10.252 -22.102 28.057 1 25.46 ? O1P FMN 198 C 1 HETATM 30 O O2P FMN . . . L 2 12.739 -22.347 27.914 1 26.36 ? O2P FMN 198 C 1 HETATM 31 O O3P FMN . . . L 2 11.302 -24.326 28.246 1 26.14 ? O3P FMN 198 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #