data_2R97 # _model_server_result.job_id qyes74w9-cBerjcjpnrH1Q _model_server_result.datetime_utc '2024-11-08 09:31:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2r97 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":198}' # _entry.id 2R97 # _exptl.entry_id 2R97 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2R97 _cell.length_a 61.13 _cell.length_b 61.13 _cell.length_c 168.38 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2R97 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 70 n n N1 C10 FMN doub 71 n n C2 O2 FMN doub 72 n n C2 N3 FMN sing 73 n n N3 C4 FMN sing 74 n n N3 HN3 FMN sing 75 n n C4 O4 FMN doub 76 n n C4 C4A FMN sing 77 n n C4A N5 FMN doub 78 n n C4A C10 FMN sing 79 n n N5 C5A FMN sing 80 n n C5A C6 FMN doub 81 n y C5A C9A FMN sing 82 n y C6 C7 FMN sing 83 n y C6 H6 FMN sing 84 n n C7 C7M FMN sing 85 n n C7 C8 FMN doub 86 n y C7M HM71 FMN sing 87 n n C7M HM72 FMN sing 88 n n C7M HM73 FMN sing 89 n n C8 C8M FMN sing 90 n n C8 C9 FMN sing 91 n y C8M HM81 FMN sing 92 n n C8M HM82 FMN sing 93 n n C8M HM83 FMN sing 94 n n C9 C9A FMN doub 95 n y C9 H9 FMN sing 96 n n C9A N10 FMN sing 97 n n N10 C10 FMN sing 98 n n N10 C1' FMN sing 99 n n C1' C2' FMN sing 100 n n C1' "H1'1" FMN sing 101 n n C1' "H1'2" FMN sing 102 n n C2' O2' FMN sing 103 n n C2' C3' FMN sing 104 n n C2' H2' FMN sing 105 n n O2' HO2' FMN sing 106 n n C3' O3' FMN sing 107 n n C3' C4' FMN sing 108 n n C3' H3' FMN sing 109 n n O3' HO3' FMN sing 110 n n C4' O4' FMN sing 111 n n C4' C5' FMN sing 112 n n C4' H4' FMN sing 113 n n O4' HO4' FMN sing 114 n n C5' O5' FMN sing 115 n n C5' "H5'1" FMN sing 116 n n C5' "H5'2" FMN sing 117 n n O5' P FMN sing 118 n n P O1P FMN doub 119 n n P O2P FMN sing 120 n n P O3P FMN sing 121 n n O2P HOP2 FMN sing 122 n n O3P HOP3 FMN sing 123 n n # _atom_sites.entry_id 2R97 _atom_sites.fract_transf_matrix[1][1] 0.016359 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016359 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 198 198 FMN FMN . D 2 FMN C 1 198 198 FMN FMN . E 3 HOH A 1 199 200 HOH HOH . E 3 HOH A 2 200 201 HOH HOH . E 3 HOH A 3 201 202 HOH HOH . E 3 HOH A 4 202 203 HOH HOH . E 3 HOH A 5 203 204 HOH HOH . E 3 HOH A 6 204 205 HOH HOH . E 3 HOH A 7 205 206 HOH HOH . E 3 HOH A 8 206 207 HOH HOH . E 3 HOH A 9 207 208 HOH HOH . E 3 HOH A 10 208 209 HOH HOH . E 3 HOH A 11 209 210 HOH HOH . E 3 HOH A 12 210 211 HOH HOH . E 3 HOH A 13 211 212 HOH HOH . E 3 HOH A 14 212 213 HOH HOH . E 3 HOH A 15 213 214 HOH HOH . E 3 HOH A 16 214 215 HOH HOH . E 3 HOH A 17 215 216 HOH HOH . E 3 HOH A 18 216 217 HOH HOH . E 3 HOH A 19 217 218 HOH HOH . E 3 HOH A 20 218 219 HOH HOH . E 3 HOH A 21 219 220 HOH HOH . E 3 HOH A 22 220 221 HOH HOH . E 3 HOH A 23 221 222 HOH HOH . E 3 HOH A 24 222 223 HOH HOH . E 3 HOH A 25 223 224 HOH HOH . E 3 HOH A 26 224 225 HOH HOH . E 3 HOH A 27 225 226 HOH HOH . E 3 HOH A 28 226 227 HOH HOH . E 3 HOH A 29 227 228 HOH HOH . E 3 HOH A 30 228 229 HOH HOH . E 3 HOH A 31 229 230 HOH HOH . E 3 HOH A 32 230 231 HOH HOH . E 3 HOH A 33 231 232 HOH HOH . E 3 HOH A 34 232 233 HOH HOH . E 3 HOH A 35 233 234 HOH HOH . E 3 HOH A 36 234 235 HOH HOH . E 3 HOH A 37 235 236 HOH HOH . E 3 HOH A 38 236 237 HOH HOH . E 3 HOH A 39 237 238 HOH HOH . E 3 HOH A 40 238 239 HOH HOH . E 3 HOH A 41 239 240 HOH HOH . E 3 HOH A 42 240 241 HOH HOH . E 3 HOH A 43 241 242 HOH HOH . E 3 HOH A 44 242 243 HOH HOH . E 3 HOH A 45 243 244 HOH HOH . E 3 HOH A 46 244 245 HOH HOH . E 3 HOH A 47 245 246 HOH HOH . E 3 HOH A 48 246 247 HOH HOH . E 3 HOH A 49 247 248 HOH HOH . E 3 HOH A 50 248 249 HOH HOH . E 3 HOH A 51 249 250 HOH HOH . E 3 HOH A 52 250 251 HOH HOH . E 3 HOH A 53 251 252 HOH HOH . E 3 HOH A 54 252 253 HOH HOH . E 3 HOH A 55 253 254 HOH HOH . E 3 HOH A 56 254 255 HOH HOH . E 3 HOH A 57 255 256 HOH HOH . E 3 HOH A 58 256 257 HOH HOH . E 3 HOH A 59 257 258 HOH HOH . E 3 HOH A 60 258 259 HOH HOH . E 3 HOH A 61 259 260 HOH HOH . E 3 HOH A 62 260 261 HOH HOH . E 3 HOH A 63 261 262 HOH HOH . E 3 HOH A 64 262 263 HOH HOH . E 3 HOH A 65 263 264 HOH HOH . E 3 HOH A 66 264 265 HOH HOH . E 3 HOH A 67 265 266 HOH HOH . E 3 HOH A 68 266 267 HOH HOH . E 3 HOH A 69 267 268 HOH HOH . E 3 HOH A 70 268 269 HOH HOH . E 3 HOH A 71 269 270 HOH HOH . E 3 HOH A 72 270 271 HOH HOH . E 3 HOH A 73 271 272 HOH HOH . E 3 HOH A 74 272 273 HOH HOH . E 3 HOH A 75 273 274 HOH HOH . E 3 HOH A 76 274 275 HOH HOH . E 3 HOH A 77 275 276 HOH HOH . E 3 HOH A 78 276 277 HOH HOH . E 3 HOH A 79 277 278 HOH HOH . E 3 HOH A 80 278 279 HOH HOH . E 3 HOH A 81 279 275 HOH HOH . F 3 HOH C 1 199 199 HOH HOH . F 3 HOH C 2 200 199 HOH HOH . F 3 HOH C 3 201 200 HOH HOH . F 3 HOH C 4 202 201 HOH HOH . F 3 HOH C 5 203 202 HOH HOH . F 3 HOH C 6 204 203 HOH HOH . F 3 HOH C 7 205 204 HOH HOH . F 3 HOH C 8 206 205 HOH HOH . F 3 HOH C 9 207 206 HOH HOH . F 3 HOH C 10 208 207 HOH HOH . F 3 HOH C 11 209 208 HOH HOH . F 3 HOH C 12 210 209 HOH HOH . F 3 HOH C 13 211 210 HOH HOH . F 3 HOH C 14 212 211 HOH HOH . F 3 HOH C 15 213 212 HOH HOH . F 3 HOH C 16 214 213 HOH HOH . F 3 HOH C 17 215 214 HOH HOH . F 3 HOH C 18 216 215 HOH HOH . F 3 HOH C 19 217 216 HOH HOH . F 3 HOH C 20 218 217 HOH HOH . F 3 HOH C 21 219 218 HOH HOH . F 3 HOH C 22 220 219 HOH HOH . F 3 HOH C 23 221 220 HOH HOH . F 3 HOH C 24 222 221 HOH HOH . F 3 HOH C 25 223 222 HOH HOH . F 3 HOH C 26 224 223 HOH HOH . F 3 HOH C 27 225 224 HOH HOH . F 3 HOH C 28 226 225 HOH HOH . F 3 HOH C 29 227 226 HOH HOH . F 3 HOH C 30 228 227 HOH HOH . F 3 HOH C 31 229 228 HOH HOH . F 3 HOH C 32 230 229 HOH HOH . F 3 HOH C 33 231 230 HOH HOH . F 3 HOH C 34 232 231 HOH HOH . F 3 HOH C 35 233 232 HOH HOH . F 3 HOH C 36 234 233 HOH HOH . F 3 HOH C 37 235 234 HOH HOH . F 3 HOH C 38 236 235 HOH HOH . F 3 HOH C 39 237 236 HOH HOH . F 3 HOH C 40 238 237 HOH HOH . F 3 HOH C 41 239 238 HOH HOH . F 3 HOH C 42 240 239 HOH HOH . F 3 HOH C 43 241 240 HOH HOH . F 3 HOH C 44 242 241 HOH HOH . F 3 HOH C 45 243 242 HOH HOH . F 3 HOH C 46 244 243 HOH HOH . F 3 HOH C 47 245 244 HOH HOH . F 3 HOH C 48 246 245 HOH HOH . F 3 HOH C 49 247 246 HOH HOH . F 3 HOH C 50 248 247 HOH HOH . F 3 HOH C 51 249 248 HOH HOH . F 3 HOH C 52 250 249 HOH HOH . F 3 HOH C 53 251 250 HOH HOH . F 3 HOH C 54 252 251 HOH HOH . F 3 HOH C 55 253 252 HOH HOH . F 3 HOH C 56 254 253 HOH HOH . F 3 HOH C 57 255 254 HOH HOH . F 3 HOH C 58 256 255 HOH HOH . F 3 HOH C 59 257 256 HOH HOH . F 3 HOH C 60 258 257 HOH HOH . F 3 HOH C 61 259 258 HOH HOH . F 3 HOH C 62 260 259 HOH HOH . F 3 HOH C 63 261 260 HOH HOH . F 3 HOH C 64 262 261 HOH HOH . F 3 HOH C 65 263 262 HOH HOH . F 3 HOH C 66 264 263 HOH HOH . F 3 HOH C 67 265 264 HOH HOH . F 3 HOH C 68 266 265 HOH HOH . F 3 HOH C 69 267 266 HOH HOH . F 3 HOH C 70 268 267 HOH HOH . F 3 HOH C 71 269 268 HOH HOH . F 3 HOH C 72 270 269 HOH HOH . F 3 HOH C 73 271 270 HOH HOH . F 3 HOH C 74 272 271 HOH HOH . F 3 HOH C 75 273 272 HOH HOH . F 3 HOH C 76 274 273 HOH HOH . F 3 HOH C 77 275 274 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 2 -1.564 -1.514 17.733 1 18.62 ? N1 FMN 198 C 1 HETATM 2 C C2 FMN . . . D 2 -0.928 -2.249 16.786 1 18.78 ? C2 FMN 198 C 1 HETATM 3 O O2 FMN . . . D 2 0.095 -2.817 17.112 1 19.75 ? O2 FMN 198 C 1 HETATM 4 N N3 FMN . . . D 2 -1.428 -2.345 15.485 1 19.9 ? N3 FMN 198 C 1 HETATM 5 C C4 FMN . . . D 2 -2.607 -1.703 15.169 1 19.31 ? C4 FMN 198 C 1 HETATM 6 O O4 FMN . . . D 2 -3 -1.681 14.017 1 16.71 ? O4 FMN 198 C 1 HETATM 7 C C4A FMN . . . D 2 -3.277 -0.97 16.139 1 18.37 ? C4A FMN 198 C 1 HETATM 8 N N5 FMN . . . D 2 -4.468 -0.341 15.85 1 18.71 ? N5 FMN 198 C 1 HETATM 9 C C5A FMN . . . D 2 -5.122 0.388 16.814 1 19.34 ? C5A FMN 198 C 1 HETATM 10 C C6 FMN . . . D 2 -6.313 1.052 16.517 1 19.16 ? C6 FMN 198 C 1 HETATM 11 C C7 FMN . . . D 2 -6.985 1.798 17.484 1 19.73 ? C7 FMN 198 C 1 HETATM 12 C C7M FMN . . . D 2 -8.445 2.033 17.27 1 18.34 ? C7M FMN 198 C 1 HETATM 13 C C8 FMN . . . D 2 -6.457 1.897 18.773 1 19.97 ? C8 FMN 198 C 1 HETATM 14 C C8M FMN . . . D 2 -7.062 2.808 19.816 1 21.28 ? C8M FMN 198 C 1 HETATM 15 C C9 FMN . . . D 2 -5.257 1.25 19.06 1 19.78 ? C9 FMN 198 C 1 HETATM 16 C C9A FMN . . . D 2 -4.577 0.503 18.088 1 19.01 ? C9A FMN 198 C 1 HETATM 17 N N10 FMN . . . D 2 -3.386 -0.117 18.384 1 19.48 ? N10 FMN 198 C 1 HETATM 18 C C10 FMN . . . D 2 -2.749 -0.879 17.426 1 19.74 ? C10 FMN 198 C 1 HETATM 19 C C1' FMN . . . D 2 -2.556 0.383 19.52 1 19.2 ? C1' FMN 198 C 1 HETATM 20 C C2' FMN . . . D 2 -1.873 1.729 19.298 1 21.86 ? C2' FMN 198 C 1 HETATM 21 O O2' FMN . . . D 2 -1.017 1.771 18.154 1 22.5 ? O2' FMN 198 C 1 HETATM 22 C C3' FMN . . . D 2 -0.967 2.011 20.495 1 22.84 ? C3' FMN 198 C 1 HETATM 23 O O3' FMN . . . D 2 -1.691 2.143 21.701 1 26.53 ? O3' FMN 198 C 1 HETATM 24 C C4' FMN . . . D 2 -0.319 3.343 20.212 1 22.2 ? C4' FMN 198 C 1 HETATM 25 O O4' FMN . . . D 2 0.865 3.126 19.502 1 23.21 ? O4' FMN 198 C 1 HETATM 26 C C5' FMN . . . D 2 -0.061 4.134 21.464 1 19.73 ? C5' FMN 198 C 1 HETATM 27 O O5' FMN . . . D 2 0.512 5.348 21.085 1 16.14 ? O5' FMN 198 C 1 HETATM 28 P P FMN . . . D 2 0.153 6.663 21.923 1 13.89 ? P FMN 198 C 1 HETATM 29 O O1P FMN . . . D 2 0.533 6.423 23.369 1 16.1 ? O1P FMN 198 C 1 HETATM 30 O O2P FMN . . . D 2 1.03 7.752 21.475 1 11.8 ? O2P FMN 198 C 1 HETATM 31 O O3P FMN . . . D 2 -1.349 6.897 21.895 1 17.23 ? O3P FMN 198 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #