data_2R9L
#
_model_server_result.job_id            qTzDNX55EEly9NbuT90Isw 
_model_server_result.datetime_utc      '2025-07-03 22:54:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2r9l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":293}' 
#
_entry.id    2R9L 
#
_exptl.entry_id    2R9L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2R9L 
_cell.length_a            48.531 
_cell.length_b            111.788 
_cell.length_c            139.542 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2R9L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 software_defined_assembly 1 
PISA trimeric 3 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,G,H,I,J,K,N,O,R 1 1 
C,D,F,L,M,P,Q,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 L N N 
? 5 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 A N1 DG 1 C DG 1 1_555 B N3 DC 5 D DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N2 DG 1 C DG 1 1_555 B O2 DC 5 D DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O6 DG 1 C DG 1 1_555 B N4 DC 5 D DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N3 DC 2 C DC 2 1_555 B N1 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N4 DC 2 C DC 2 1_555 B O6 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O2 DC 2 C DC 2 1_555 B N2 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N1 DG 3 C DG 3 1_555 B N3 DC 3 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N2 DG 3 C DG 3 1_555 B O2 DC 3 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A O6 DG 3 C DG 3 1_555 B N4 DC 3 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N1 DG 4 C DG 4 1_555 B N3 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N2 DG 4 C DG 4 1_555 B O2 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A O6 DG 4 C DG 4 1_555 B N4 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N3 DC 5 C DC 5 1_555 B N1 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N4 DC 5 C DC 5 1_555 B O6 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A O2 DC 5 C DC 5 1_555 B N2 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DA-DC MISPAIR' hydrog16 B N3 DA 7 D DA 7 1_555 D N4 DC 12 F DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 B N3 DC 8 D DC 8 1_555 D N1 DG 13 F DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 B N4 DC 8 D DC 8 1_555 D O6 DG 13 F DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 B O2 DC 8 D DC 8 1_555 D N2 DG 13 F DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_11_PAIR hydrog20 B N2 DG 9 D DG 9 1_555 B N7 DA 11 D DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_11_PAIR hydrog21 B N3 DG 9 D DG 9 1_555 B N6 DA 11 D DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 B N1 DG 9 D DG 9 1_555 D N3 DC 10 F DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 B N2 DG 9 D DG 9 1_555 D O2 DC 10 F DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 B O6 DG 9 D DG 9 1_555 D N4 DC 10 F DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 B N3 DC 10 D DC 10 1_555 D N1 DG 9 F DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 B N4 DC 10 D DC 10 1_555 D O6 DG 9 F DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 B O2 DC 10 D DC 10 1_555 D N2 DG 9 F DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 C N1 DG 1 E DG 1 1_555 D N3 DC 5 F DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog29 C N2 DG 1 E DG 1 1_555 D O2 DC 5 F DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 C O6 DG 1 E DG 1 1_555 D N4 DC 5 F DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog31 C N3 DC 2 E DC 2 1_555 D N1 DG 4 F DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog32 C N4 DC 2 E DC 2 1_555 D O6 DG 4 F DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog33 C O2 DC 2 E DC 2 1_555 D N2 DG 4 F DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog34 C N1 DG 3 E DG 3 1_555 D N3 DC 3 F DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog35 C N2 DG 3 E DG 3 1_555 D O2 DC 3 F DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog36 C O6 DG 3 E DG 3 1_555 D N4 DC 3 F DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog37 C N1 DG 4 E DG 4 1_555 D N3 DC 2 F DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog38 C N2 DG 4 E DG 4 1_555 D O2 DC 2 F DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog39 C O6 DG 4 E DG 4 1_555 D N4 DC 2 F DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog40 C N3 DC 5 E DC 5 1_555 D N1 DG 1 F DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog41 C N4 DC 5 E DC 5 1_555 D O6 DG 1 F DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog42 C O2 DC 5 E DC 5 1_555 D N2 DG 1 F DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 182 n n 
C1 C2 EDO sing 183 n n 
C1 H11 EDO sing 184 n n 
C1 H12 EDO sing 185 n n 
O1 HO1 EDO sing 186 n n 
C2 O2 EDO sing 187 n n 
C2 H21 EDO sing 188 n n 
C2 H22 EDO sing 189 n n 
O2 HO2 EDO sing 190 n n 
#
_atom_sites.entry_id                     2R9L 
_atom_sites.fract_transf_matrix[1][1]    0.020605 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008946 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007166 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 EDO A 1 293 1 EDO EDO . 
H 5 EDO A 1 294 2 EDO EDO . 
I 5 EDO A 1 295 5 EDO EDO . 
J 5 EDO A 1 296 6 EDO EDO . 
K 6 PEG A 1 297 7 PEG PEG . 
L 5 EDO B 1 293 3 EDO EDO . 
M 5 EDO B 1 294 4 EDO EDO . 
N 7 HOH C 1 16 16 HOH HOH . 
N 7 HOH C 2 34 34 HOH HOH . 
N 7 HOH C 3 63 63 HOH HOH . 
O 7 HOH D 1 47 47 HOH HOH . 
O 7 HOH D 2 50 50 HOH HOH . 
O 7 HOH D 3 79 79 HOH HOH . 
O 7 HOH D 4 85 85 HOH HOH . 
O 7 HOH D 5 94 94 HOH HOH . 
P 7 HOH E 1 17 71 HOH HOH . 
P 7 HOH E 2 31 31 HOH HOH . 
P 7 HOH E 3 46 46 HOH HOH . 
Q 7 HOH F 1 14 11 HOH HOH . 
Q 7 HOH F 2 15 13 HOH HOH . 
Q 7 HOH F 3 16 57 HOH HOH . 
R 7 HOH A 1 298 3 HOH HOH . 
R 7 HOH A 2 299 5 HOH HOH . 
R 7 HOH A 3 300 7 HOH HOH . 
R 7 HOH A 4 301 9 HOH HOH . 
R 7 HOH A 5 302 12 HOH HOH . 
R 7 HOH A 6 303 14 HOH HOH . 
R 7 HOH A 7 304 15 HOH HOH . 
R 7 HOH A 8 305 17 HOH HOH . 
R 7 HOH A 9 306 18 HOH HOH . 
R 7 HOH A 10 307 19 HOH HOH . 
R 7 HOH A 11 308 21 HOH HOH . 
R 7 HOH A 12 309 22 HOH HOH . 
R 7 HOH A 13 310 24 HOH HOH . 
R 7 HOH A 14 311 25 HOH HOH . 
R 7 HOH A 15 312 27 HOH HOH . 
R 7 HOH A 16 313 33 HOH HOH . 
R 7 HOH A 17 314 35 HOH HOH . 
R 7 HOH A 18 315 38 HOH HOH . 
R 7 HOH A 19 316 39 HOH HOH . 
R 7 HOH A 20 317 40 HOH HOH . 
R 7 HOH A 21 318 41 HOH HOH . 
R 7 HOH A 22 319 42 HOH HOH . 
R 7 HOH A 23 320 44 HOH HOH . 
R 7 HOH A 24 321 48 HOH HOH . 
R 7 HOH A 25 322 49 HOH HOH . 
R 7 HOH A 26 323 51 HOH HOH . 
R 7 HOH A 27 324 52 HOH HOH . 
R 7 HOH A 28 325 58 HOH HOH . 
R 7 HOH A 29 326 64 HOH HOH . 
R 7 HOH A 30 327 65 HOH HOH . 
R 7 HOH A 31 328 66 HOH HOH . 
R 7 HOH A 32 329 67 HOH HOH . 
R 7 HOH A 33 330 69 HOH HOH . 
R 7 HOH A 34 331 70 HOH HOH . 
R 7 HOH A 35 332 72 HOH HOH . 
R 7 HOH A 36 333 76 HOH HOH . 
R 7 HOH A 37 334 78 HOH HOH . 
R 7 HOH A 38 335 84 HOH HOH . 
R 7 HOH A 39 336 87 HOH HOH . 
R 7 HOH A 40 337 88 HOH HOH . 
R 7 HOH A 41 338 91 HOH HOH . 
R 7 HOH A 42 339 93 HOH HOH . 
R 7 HOH A 43 340 96 HOH HOH . 
R 7 HOH A 44 341 97 HOH HOH . 
R 7 HOH A 45 342 99 HOH HOH . 
R 7 HOH A 46 343 100 HOH HOH . 
R 7 HOH A 47 344 101 HOH HOH . 
R 7 HOH A 48 345 102 HOH HOH . 
R 7 HOH A 49 346 103 HOH HOH . 
R 7 HOH A 50 347 104 HOH HOH . 
R 7 HOH A 51 348 105 HOH HOH . 
R 7 HOH A 52 349 106 HOH HOH . 
R 7 HOH A 53 350 107 HOH HOH . 
S 7 HOH B 1 295 4 HOH HOH . 
S 7 HOH B 2 296 6 HOH HOH . 
S 7 HOH B 3 297 8 HOH HOH . 
S 7 HOH B 4 298 10 HOH HOH . 
S 7 HOH B 5 299 20 HOH HOH . 
S 7 HOH B 6 300 23 HOH HOH . 
S 7 HOH B 7 301 28 HOH HOH . 
S 7 HOH B 8 302 29 HOH HOH . 
S 7 HOH B 9 303 32 HOH HOH . 
S 7 HOH B 10 304 37 HOH HOH . 
S 7 HOH B 11 305 43 HOH HOH . 
S 7 HOH B 12 306 53 HOH HOH . 
S 7 HOH B 13 307 54 HOH HOH . 
S 7 HOH B 14 308 55 HOH HOH . 
S 7 HOH B 15 309 56 HOH HOH . 
S 7 HOH B 16 310 59 HOH HOH . 
S 7 HOH B 17 311 60 HOH HOH . 
S 7 HOH B 18 312 61 HOH HOH . 
S 7 HOH B 19 313 62 HOH HOH . 
S 7 HOH B 20 314 68 HOH HOH . 
S 7 HOH B 21 315 73 HOH HOH . 
S 7 HOH B 22 316 74 HOH HOH . 
S 7 HOH B 23 317 75 HOH HOH . 
S 7 HOH B 24 318 77 HOH HOH . 
S 7 HOH B 25 319 81 HOH HOH . 
S 7 HOH B 26 320 82 HOH HOH . 
S 7 HOH B 27 321 83 HOH HOH . 
S 7 HOH B 28 322 86 HOH HOH . 
S 7 HOH B 29 323 89 HOH HOH . 
S 7 HOH B 30 324 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . L 5 -12.687 -10.013 -43.799 1 96.26 ? C1 EDO 293 B 1 
HETATM 2 O O1 EDO . . . L 5 -11.948 -9.744 -44.994 1 91.68 ? O1 EDO 293 B 1 
HETATM 3 C C2 EDO . . . L 5 -13.753 -8.943 -43.615 1 96.91 ? C2 EDO 293 B 1 
HETATM 4 O O2 EDO . . . L 5 -14.964 -9.552 -43.145 1 103.72 ? O2 EDO 293 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           233 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#