data_2RAH # _model_server_result.job_id Y18ScvidlFUeqd80Tvtc8Q _model_server_result.datetime_utc '2024-11-05 07:53:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":356}' # _entry.id 2RAH # _exptl.entry_id 2RAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 309.15 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(7R)-6,7-dihydro-5H-cyclopenta[c]pyridin-7-yl(hydroxy)methylene]bis(phosphonic acid)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RAH _cell.length_a 111.171 _cell.length_b 111.171 _cell.length_c 70.44 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 35.22 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 268 A ASP 243 1_555 B MG MG . A MG 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc2 B MG MG . A MG 354 1_555 D O8 11P . A 11P 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc3 B MG MG . A MG 354 1_555 D O7 11P . A 11P 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc4 B MG MG . A MG 354 1_555 E O HOH . A HOH 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc5 B MG MG . A MG 354 1_555 E O HOH . A HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc6 B MG MG . A MG 354 1_555 E O HOH . A HOH 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? # _chem_comp.formula 'C9 H13 N O7 P2' _chem_comp.formula_weight 309.15 _chem_comp.id 11P _chem_comp.mon_nstd_flag . _chem_comp.name '[(7R)-6,7-dihydro-5H-cyclopenta[c]pyridin-7-yl(hydroxy)methylene]bis(phosphonic acid)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C16 11P sing 1 n n C17 C23 11P sing 2 n n C16 C3 11P sing 3 n n O10 P1 11P doub 4 n n O9 P1 11P sing 5 n n C23 C26 11P doub 6 n y C23 C27 11P sing 7 n y C3 C27 11P sing 8 n n C3 C1 11P sing 9 n n P1 C1 11P sing 10 n n P1 O8 11P sing 11 n n C26 C29 11P sing 12 n y C27 C28 11P doub 13 n y C1 O2 11P sing 14 n n C1 P4 11P sing 15 n n O6 P4 11P doub 16 n n C29 N25 11P doub 17 n y C28 N25 11P sing 18 n y P4 O5 11P sing 19 n n P4 O7 11P sing 20 n n O5 HO5 11P sing 21 n n O7 HO7 11P sing 22 n n O8 HO8 11P sing 23 n n O2 HO2 11P sing 24 n n O9 HO9 11P sing 25 n n C3 H3 11P sing 26 n n C16 H161 11P sing 27 n n C16 H162 11P sing 28 n n C17 H171 11P sing 29 n n C17 H172 11P sing 30 n n C26 H26 11P sing 31 n n C29 H29 11P sing 32 n n C28 H28 11P sing 33 n n # _atom_sites.entry_id 2RAH _atom_sites.fract_transf_matrix[1][1] 0.008995 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 354 2 MG MG . C 3 SO4 A 1 355 5 SO4 SO4 . D 4 11P A 1 356 1 11P 11P . E 5 HOH A 1 357 4 HOH HOH . E 5 HOH A 2 358 5 HOH HOH . E 5 HOH A 3 359 6 HOH HOH . E 5 HOH A 4 360 7 HOH HOH . E 5 HOH A 5 361 8 HOH HOH . E 5 HOH A 6 362 9 HOH HOH . E 5 HOH A 7 363 10 HOH HOH . E 5 HOH A 8 364 11 HOH HOH . E 5 HOH A 9 365 12 HOH HOH . E 5 HOH A 10 366 13 HOH HOH . E 5 HOH A 11 367 1 HOH HOH . E 5 HOH A 12 368 2 HOH HOH . E 5 HOH A 13 369 3 HOH HOH . E 5 HOH A 14 370 4 HOH HOH . E 5 HOH A 15 371 5 HOH HOH . E 5 HOH A 16 372 6 HOH HOH . E 5 HOH A 17 373 7 HOH HOH . E 5 HOH A 18 374 8 HOH HOH . E 5 HOH A 19 375 9 HOH HOH . E 5 HOH A 20 376 10 HOH HOH . E 5 HOH A 21 377 11 HOH HOH . E 5 HOH A 22 378 12 HOH HOH . E 5 HOH A 23 379 13 HOH HOH . E 5 HOH A 24 380 14 HOH HOH . E 5 HOH A 25 381 15 HOH HOH . E 5 HOH A 26 382 16 HOH HOH . E 5 HOH A 27 383 17 HOH HOH . E 5 HOH A 28 384 18 HOH HOH . E 5 HOH A 29 385 19 HOH HOH . E 5 HOH A 30 386 20 HOH HOH . E 5 HOH A 31 387 21 HOH HOH . E 5 HOH A 32 388 22 HOH HOH . E 5 HOH A 33 389 24 HOH HOH . E 5 HOH A 34 390 25 HOH HOH . E 5 HOH A 35 391 26 HOH HOH . E 5 HOH A 36 392 28 HOH HOH . E 5 HOH A 37 393 29 HOH HOH . E 5 HOH A 38 394 30 HOH HOH . E 5 HOH A 39 395 31 HOH HOH . E 5 HOH A 40 396 32 HOH HOH . E 5 HOH A 41 397 33 HOH HOH . E 5 HOH A 42 398 34 HOH HOH . E 5 HOH A 43 399 35 HOH HOH . E 5 HOH A 44 400 36 HOH HOH . E 5 HOH A 45 401 37 HOH HOH . E 5 HOH A 46 402 38 HOH HOH . E 5 HOH A 47 403 39 HOH HOH . E 5 HOH A 48 404 40 HOH HOH . E 5 HOH A 49 405 41 HOH HOH . E 5 HOH A 50 406 42 HOH HOH . E 5 HOH A 51 407 44 HOH HOH . E 5 HOH A 52 408 45 HOH HOH . E 5 HOH A 53 409 46 HOH HOH . E 5 HOH A 54 410 47 HOH HOH . E 5 HOH A 55 411 48 HOH HOH . E 5 HOH A 56 412 49 HOH HOH . E 5 HOH A 57 413 50 HOH HOH . E 5 HOH A 58 414 51 HOH HOH . E 5 HOH A 59 415 53 HOH HOH . E 5 HOH A 60 416 54 HOH HOH . E 5 HOH A 61 417 55 HOH HOH . E 5 HOH A 62 418 58 HOH HOH . E 5 HOH A 63 419 60 HOH HOH . E 5 HOH A 64 420 61 HOH HOH . E 5 HOH A 65 421 62 HOH HOH . E 5 HOH A 66 422 63 HOH HOH . E 5 HOH A 67 423 64 HOH HOH . E 5 HOH A 68 424 65 HOH HOH . E 5 HOH A 69 425 66 HOH HOH . E 5 HOH A 70 426 67 HOH HOH . E 5 HOH A 71 427 68 HOH HOH . E 5 HOH A 72 428 69 HOH HOH . E 5 HOH A 73 429 70 HOH HOH . E 5 HOH A 74 430 71 HOH HOH . E 5 HOH A 75 431 73 HOH HOH . E 5 HOH A 76 432 75 HOH HOH . E 5 HOH A 77 433 79 HOH HOH . E 5 HOH A 78 434 80 HOH HOH . E 5 HOH A 79 435 81 HOH HOH . E 5 HOH A 80 436 82 HOH HOH . E 5 HOH A 81 437 83 HOH HOH . E 5 HOH A 82 438 84 HOH HOH . E 5 HOH A 83 439 85 HOH HOH . E 5 HOH A 84 440 86 HOH HOH . E 5 HOH A 85 441 89 HOH HOH . E 5 HOH A 86 442 90 HOH HOH . E 5 HOH A 87 443 91 HOH HOH . E 5 HOH A 88 444 92 HOH HOH . E 5 HOH A 89 445 93 HOH HOH . E 5 HOH A 90 446 94 HOH HOH . E 5 HOH A 91 447 97 HOH HOH . E 5 HOH A 92 448 98 HOH HOH . E 5 HOH A 93 449 101 HOH HOH . E 5 HOH A 94 450 102 HOH HOH . E 5 HOH A 95 451 103 HOH HOH . E 5 HOH A 96 452 104 HOH HOH . E 5 HOH A 97 453 105 HOH HOH . E 5 HOH A 98 454 106 HOH HOH . E 5 HOH A 99 455 107 HOH HOH . E 5 HOH A 100 456 108 HOH HOH . E 5 HOH A 101 457 109 HOH HOH . E 5 HOH A 102 458 111 HOH HOH . E 5 HOH A 103 459 113 HOH HOH . E 5 HOH A 104 460 114 HOH HOH . E 5 HOH A 105 461 115 HOH HOH . E 5 HOH A 106 462 117 HOH HOH . E 5 HOH A 107 463 118 HOH HOH . E 5 HOH A 108 464 119 HOH HOH . E 5 HOH A 109 465 120 HOH HOH . E 5 HOH A 110 466 121 HOH HOH . E 5 HOH A 111 467 125 HOH HOH . E 5 HOH A 112 468 127 HOH HOH . E 5 HOH A 113 469 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 11P . . . D 4 16.153 -32.73 28.022 1 40.92 ? O5 11P 356 A 1 HETATM 2 O O6 11P . . . D 4 17.424 -34.096 26.301 1 47.78 ? O6 11P 356 A 1 HETATM 3 O O7 11P . . . D 4 16.014 -35.184 28.093 1 36.58 ? O7 11P 356 A 1 HETATM 4 O O8 11P . . . D 4 15.023 -36.764 26.177 1 38.67 ? O8 11P 356 A 1 HETATM 5 P P4 11P . . . D 4 16.189 -33.99 27.181 1 43.49 ? P4 11P 356 A 1 HETATM 6 C C1 11P . . . D 4 14.79 -34.149 26.034 1 40 ? C1 11P 356 A 1 HETATM 7 O O2 11P . . . D 4 13.705 -34.304 26.781 1 43.7 ? O2 11P 356 A 1 HETATM 8 P P1 11P . . . D 4 15.075 -35.694 25.113 1 40.34 ? P1 11P 356 A 1 HETATM 9 O O10 11P . . . D 4 14.014 -35.796 24.04 1 34.78 ? O10 11P 356 A 1 HETATM 10 O O9 11P . . . D 4 16.449 -35.586 24.469 1 40.05 ? O9 11P 356 A 1 HETATM 11 C C3 11P . . . D 4 14.424 -32.992 25.089 1 40.93 ? C3 11P 356 A 1 HETATM 12 C C16 11P . . . D 4 15.344 -32.795 23.876 1 39.81 ? C16 11P 356 A 1 HETATM 13 C C17 11P . . . D 4 15.296 -31.31 23.525 1 40.02 ? C17 11P 356 A 1 HETATM 14 C C23 11P . . . D 4 14.829 -30.687 24.821 1 39.58 ? C23 11P 356 A 1 HETATM 15 C C26 11P . . . D 4 14.861 -29.342 25.175 1 34.13 ? C26 11P 356 A 1 HETATM 16 C C29 11P . . . D 4 14.373 -29.009 26.438 1 37.03 ? C29 11P 356 A 1 HETATM 17 N N25 11P . . . D 4 13.898 -29.949 27.279 1 36.43 ? N25 11P 356 A 1 HETATM 18 C C28 11P . . . D 4 13.867 -31.252 26.945 1 36.96 ? C28 11P 356 A 1 HETATM 19 C C27 11P . . . D 4 14.344 -31.633 25.692 1 38.14 ? C27 11P 356 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #