data_2RAH
#
_model_server_result.job_id            Y18ScvidlFUeqd80Tvtc8Q 
_model_server_result.datetime_utc      '2024-11-05 07:53:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2rah 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":356}' 
#
_entry.id    2RAH 
#
_exptl.entry_id    2RAH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              309.15 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(7R)-6,7-dihydro-5H-cyclopenta[c]pyridin-7-yl(hydroxy)methylene]bis(phosphonic acid)' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2RAH 
_cell.length_a            111.171 
_cell.length_b            111.171 
_cell.length_c            70.44 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2RAH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 35.22 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 268 A ASP 243 1_555 B MG MG . A MG 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc2 B MG MG . A MG 354 1_555 D O8 11P . A 11P 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc3 B MG MG . A MG 354 1_555 D O7 11P . A 11P 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc4 B MG MG . A MG 354 1_555 E O HOH . A HOH 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc5 B MG MG . A MG 354 1_555 E O HOH . A HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc6 B MG MG . A MG 354 1_555 E O HOH . A HOH 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
#
_chem_comp.formula           'C9 H13 N O7 P2' 
_chem_comp.formula_weight    309.15 
_chem_comp.id                11P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(7R)-6,7-dihydro-5H-cyclopenta[c]pyridin-7-yl(hydroxy)methylene]bis(phosphonic acid)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C17 C16 11P sing 1 n n 
C17 C23 11P sing 2 n n 
C16 C3 11P sing 3 n n 
O10 P1 11P doub 4 n n 
O9 P1 11P sing 5 n n 
C23 C26 11P doub 6 n y 
C23 C27 11P sing 7 n y 
C3 C27 11P sing 8 n n 
C3 C1 11P sing 9 n n 
P1 C1 11P sing 10 n n 
P1 O8 11P sing 11 n n 
C26 C29 11P sing 12 n y 
C27 C28 11P doub 13 n y 
C1 O2 11P sing 14 n n 
C1 P4 11P sing 15 n n 
O6 P4 11P doub 16 n n 
C29 N25 11P doub 17 n y 
C28 N25 11P sing 18 n y 
P4 O5 11P sing 19 n n 
P4 O7 11P sing 20 n n 
O5 HO5 11P sing 21 n n 
O7 HO7 11P sing 22 n n 
O8 HO8 11P sing 23 n n 
O2 HO2 11P sing 24 n n 
O9 HO9 11P sing 25 n n 
C3 H3 11P sing 26 n n 
C16 H161 11P sing 27 n n 
C16 H162 11P sing 28 n n 
C17 H171 11P sing 29 n n 
C17 H172 11P sing 30 n n 
C26 H26 11P sing 31 n n 
C29 H29 11P sing 32 n n 
C28 H28 11P sing 33 n n 
#
_atom_sites.entry_id                     2RAH 
_atom_sites.fract_transf_matrix[1][1]    0.008995 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008995 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014196 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 354 2 MG MG . 
C 3 SO4 A 1 355 5 SO4 SO4 . 
D 4 11P A 1 356 1 11P 11P . 
E 5 HOH A 1 357 4 HOH HOH . 
E 5 HOH A 2 358 5 HOH HOH . 
E 5 HOH A 3 359 6 HOH HOH . 
E 5 HOH A 4 360 7 HOH HOH . 
E 5 HOH A 5 361 8 HOH HOH . 
E 5 HOH A 6 362 9 HOH HOH . 
E 5 HOH A 7 363 10 HOH HOH . 
E 5 HOH A 8 364 11 HOH HOH . 
E 5 HOH A 9 365 12 HOH HOH . 
E 5 HOH A 10 366 13 HOH HOH . 
E 5 HOH A 11 367 1 HOH HOH . 
E 5 HOH A 12 368 2 HOH HOH . 
E 5 HOH A 13 369 3 HOH HOH . 
E 5 HOH A 14 370 4 HOH HOH . 
E 5 HOH A 15 371 5 HOH HOH . 
E 5 HOH A 16 372 6 HOH HOH . 
E 5 HOH A 17 373 7 HOH HOH . 
E 5 HOH A 18 374 8 HOH HOH . 
E 5 HOH A 19 375 9 HOH HOH . 
E 5 HOH A 20 376 10 HOH HOH . 
E 5 HOH A 21 377 11 HOH HOH . 
E 5 HOH A 22 378 12 HOH HOH . 
E 5 HOH A 23 379 13 HOH HOH . 
E 5 HOH A 24 380 14 HOH HOH . 
E 5 HOH A 25 381 15 HOH HOH . 
E 5 HOH A 26 382 16 HOH HOH . 
E 5 HOH A 27 383 17 HOH HOH . 
E 5 HOH A 28 384 18 HOH HOH . 
E 5 HOH A 29 385 19 HOH HOH . 
E 5 HOH A 30 386 20 HOH HOH . 
E 5 HOH A 31 387 21 HOH HOH . 
E 5 HOH A 32 388 22 HOH HOH . 
E 5 HOH A 33 389 24 HOH HOH . 
E 5 HOH A 34 390 25 HOH HOH . 
E 5 HOH A 35 391 26 HOH HOH . 
E 5 HOH A 36 392 28 HOH HOH . 
E 5 HOH A 37 393 29 HOH HOH . 
E 5 HOH A 38 394 30 HOH HOH . 
E 5 HOH A 39 395 31 HOH HOH . 
E 5 HOH A 40 396 32 HOH HOH . 
E 5 HOH A 41 397 33 HOH HOH . 
E 5 HOH A 42 398 34 HOH HOH . 
E 5 HOH A 43 399 35 HOH HOH . 
E 5 HOH A 44 400 36 HOH HOH . 
E 5 HOH A 45 401 37 HOH HOH . 
E 5 HOH A 46 402 38 HOH HOH . 
E 5 HOH A 47 403 39 HOH HOH . 
E 5 HOH A 48 404 40 HOH HOH . 
E 5 HOH A 49 405 41 HOH HOH . 
E 5 HOH A 50 406 42 HOH HOH . 
E 5 HOH A 51 407 44 HOH HOH . 
E 5 HOH A 52 408 45 HOH HOH . 
E 5 HOH A 53 409 46 HOH HOH . 
E 5 HOH A 54 410 47 HOH HOH . 
E 5 HOH A 55 411 48 HOH HOH . 
E 5 HOH A 56 412 49 HOH HOH . 
E 5 HOH A 57 413 50 HOH HOH . 
E 5 HOH A 58 414 51 HOH HOH . 
E 5 HOH A 59 415 53 HOH HOH . 
E 5 HOH A 60 416 54 HOH HOH . 
E 5 HOH A 61 417 55 HOH HOH . 
E 5 HOH A 62 418 58 HOH HOH . 
E 5 HOH A 63 419 60 HOH HOH . 
E 5 HOH A 64 420 61 HOH HOH . 
E 5 HOH A 65 421 62 HOH HOH . 
E 5 HOH A 66 422 63 HOH HOH . 
E 5 HOH A 67 423 64 HOH HOH . 
E 5 HOH A 68 424 65 HOH HOH . 
E 5 HOH A 69 425 66 HOH HOH . 
E 5 HOH A 70 426 67 HOH HOH . 
E 5 HOH A 71 427 68 HOH HOH . 
E 5 HOH A 72 428 69 HOH HOH . 
E 5 HOH A 73 429 70 HOH HOH . 
E 5 HOH A 74 430 71 HOH HOH . 
E 5 HOH A 75 431 73 HOH HOH . 
E 5 HOH A 76 432 75 HOH HOH . 
E 5 HOH A 77 433 79 HOH HOH . 
E 5 HOH A 78 434 80 HOH HOH . 
E 5 HOH A 79 435 81 HOH HOH . 
E 5 HOH A 80 436 82 HOH HOH . 
E 5 HOH A 81 437 83 HOH HOH . 
E 5 HOH A 82 438 84 HOH HOH . 
E 5 HOH A 83 439 85 HOH HOH . 
E 5 HOH A 84 440 86 HOH HOH . 
E 5 HOH A 85 441 89 HOH HOH . 
E 5 HOH A 86 442 90 HOH HOH . 
E 5 HOH A 87 443 91 HOH HOH . 
E 5 HOH A 88 444 92 HOH HOH . 
E 5 HOH A 89 445 93 HOH HOH . 
E 5 HOH A 90 446 94 HOH HOH . 
E 5 HOH A 91 447 97 HOH HOH . 
E 5 HOH A 92 448 98 HOH HOH . 
E 5 HOH A 93 449 101 HOH HOH . 
E 5 HOH A 94 450 102 HOH HOH . 
E 5 HOH A 95 451 103 HOH HOH . 
E 5 HOH A 96 452 104 HOH HOH . 
E 5 HOH A 97 453 105 HOH HOH . 
E 5 HOH A 98 454 106 HOH HOH . 
E 5 HOH A 99 455 107 HOH HOH . 
E 5 HOH A 100 456 108 HOH HOH . 
E 5 HOH A 101 457 109 HOH HOH . 
E 5 HOH A 102 458 111 HOH HOH . 
E 5 HOH A 103 459 113 HOH HOH . 
E 5 HOH A 104 460 114 HOH HOH . 
E 5 HOH A 105 461 115 HOH HOH . 
E 5 HOH A 106 462 117 HOH HOH . 
E 5 HOH A 107 463 118 HOH HOH . 
E 5 HOH A 108 464 119 HOH HOH . 
E 5 HOH A 109 465 120 HOH HOH . 
E 5 HOH A 110 466 121 HOH HOH . 
E 5 HOH A 111 467 125 HOH HOH . 
E 5 HOH A 112 468 127 HOH HOH . 
E 5 HOH A 113 469 128 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5 11P . . . D 4 16.153 -32.73 28.022 1 40.92 ? O5 11P 356 A 1 
HETATM 2 O O6 11P . . . D 4 17.424 -34.096 26.301 1 47.78 ? O6 11P 356 A 1 
HETATM 3 O O7 11P . . . D 4 16.014 -35.184 28.093 1 36.58 ? O7 11P 356 A 1 
HETATM 4 O O8 11P . . . D 4 15.023 -36.764 26.177 1 38.67 ? O8 11P 356 A 1 
HETATM 5 P P4 11P . . . D 4 16.189 -33.99 27.181 1 43.49 ? P4 11P 356 A 1 
HETATM 6 C C1 11P . . . D 4 14.79 -34.149 26.034 1 40 ? C1 11P 356 A 1 
HETATM 7 O O2 11P . . . D 4 13.705 -34.304 26.781 1 43.7 ? O2 11P 356 A 1 
HETATM 8 P P1 11P . . . D 4 15.075 -35.694 25.113 1 40.34 ? P1 11P 356 A 1 
HETATM 9 O O10 11P . . . D 4 14.014 -35.796 24.04 1 34.78 ? O10 11P 356 A 1 
HETATM 10 O O9 11P . . . D 4 16.449 -35.586 24.469 1 40.05 ? O9 11P 356 A 1 
HETATM 11 C C3 11P . . . D 4 14.424 -32.992 25.089 1 40.93 ? C3 11P 356 A 1 
HETATM 12 C C16 11P . . . D 4 15.344 -32.795 23.876 1 39.81 ? C16 11P 356 A 1 
HETATM 13 C C17 11P . . . D 4 15.296 -31.31 23.525 1 40.02 ? C17 11P 356 A 1 
HETATM 14 C C23 11P . . . D 4 14.829 -30.687 24.821 1 39.58 ? C23 11P 356 A 1 
HETATM 15 C C26 11P . . . D 4 14.861 -29.342 25.175 1 34.13 ? C26 11P 356 A 1 
HETATM 16 C C29 11P . . . D 4 14.373 -29.009 26.438 1 37.03 ? C29 11P 356 A 1 
HETATM 17 N N25 11P . . . D 4 13.898 -29.949 27.279 1 36.43 ? N25 11P 356 A 1 
HETATM 18 C C28 11P . . . D 4 13.867 -31.252 26.945 1 36.96 ? C28 11P 356 A 1 
HETATM 19 C C27 11P . . . D 4 14.344 -31.633 25.692 1 38.14 ? C27 11P 356 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#