data_2RAK # _model_server_result.job_id FNxX6EruAmECzn454kb2_g _model_server_result.datetime_utc '2025-03-05 01:14:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1163}' # _entry.id 2RAK # _exptl.entry_id 2RAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 554.374 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(BUTANOYLOXY)-1-{[(HYDROXY{[2,3,4,6-TETRAHYDROXY-5-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL)OXY]METHYL}ETHYL BUTANOATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RAK _cell.length_a 64.059 _cell.length_b 144.177 _cell.length_c 118.245 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H32 O16 P2' _chem_comp.formula_weight 554.374 _chem_comp.id PIB _chem_comp.mon_nstd_flag . _chem_comp.name '2-(BUTANOYLOXY)-1-{[(HYDROXY{[2,3,4,6-TETRAHYDROXY-5-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL)OXY]METHYL}ETHYL BUTANOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'D-MYO-PHOSPHATIDYLINOSITOL 3-PHOSPHATED (+)-SN-1,2-DI-O-BUTANOYLGLYCERYL,3-O-PHOSPHO' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PIB sing 258 n n C1 C6 PIB sing 259 n n C1 O1 PIB sing 260 n n C1 HC1 PIB sing 261 n n C2 C3 PIB sing 262 n n C2 O2 PIB sing 263 n n C2 HC2 PIB sing 264 n n C3 C4 PIB sing 265 n n C3 O3 PIB sing 266 n n C3 HC3 PIB sing 267 n n C4 C5 PIB sing 268 n n C4 O4 PIB sing 269 n n C4 HC4 PIB sing 270 n n C5 C6 PIB sing 271 n n C5 O5 PIB sing 272 n n C5 HC5 PIB sing 273 n n C6 O6 PIB sing 274 n n C6 HC6 PIB sing 275 n n O1 P1 PIB sing 276 n n O2 HO2 PIB sing 277 n n O3 P3 PIB sing 278 n n O4 HO4 PIB sing 279 n n O5 HO5 PIB sing 280 n n O6 HO6 PIB sing 281 n n P1 O11 PIB sing 282 n n P1 O12 PIB doub 283 n n P1 O13 PIB sing 284 n n O11 HO11 PIB sing 285 n n O13 C7 PIB sing 286 n n P3 O31 PIB sing 287 n n P3 O32 PIB doub 288 n n P3 O33 PIB sing 289 n n O31 HO31 PIB sing 290 n n O33 HO33 PIB sing 291 n n C7 C8 PIB sing 292 n n C7 HC71 PIB sing 293 n n C7 HC72 PIB sing 294 n n C8 C9 PIB sing 295 n n C8 O14 PIB sing 296 n n C8 HC8 PIB sing 297 n n C9 O15 PIB sing 298 n n C9 HC91 PIB sing 299 n n C9 HC92 PIB sing 300 n n C10 C11 PIB sing 301 n n C10 O15 PIB sing 302 n n C10 O16 PIB doub 303 n n C11 C12 PIB sing 304 n n C11 H111 PIB sing 305 n n C11 H112 PIB sing 306 n n C12 C13 PIB sing 307 n n C12 H121 PIB sing 308 n n C12 H122 PIB sing 309 n n C13 H131 PIB sing 310 n n C13 H132 PIB sing 311 n n C13 H133 PIB sing 312 n n C14 C15 PIB sing 313 n n C14 O14 PIB sing 314 n n C14 O17 PIB doub 315 n n C15 C16 PIB sing 316 n n C15 H151 PIB sing 317 n n C15 H152 PIB sing 318 n n C16 C17 PIB sing 319 n n C16 H161 PIB sing 320 n n C16 H162 PIB sing 321 n n C17 H171 PIB sing 322 n n C17 H172 PIB sing 323 n n C17 H173 PIB sing 324 n n # _atom_sites.entry_id 2RAK _atom_sites.fract_transf_matrix[1][1] 0.015611 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006936 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id PIB _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1163 _pdbx_nonpoly_scheme.auth_seq_num 1163 _pdbx_nonpoly_scheme.pdb_mon_id PIB _pdbx_nonpoly_scheme.auth_mon_id PIB _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PIB . . . B 2 4.28 33.275 15.788 1 72.27 ? C1 PIB 1163 A 1 HETATM 2 C C2 PIB . . . B 2 5.599 34.028 16.103 1 69.88 ? C2 PIB 1163 A 1 HETATM 3 C C3 PIB . . . B 2 6.377 33.303 17.234 1 70.02 ? C3 PIB 1163 A 1 HETATM 4 C C4 PIB . . . B 2 6.679 31.838 16.809 1 70.3 ? C4 PIB 1163 A 1 HETATM 5 C C5 PIB . . . B 2 5.365 31.072 16.524 1 71.53 ? C5 PIB 1163 A 1 HETATM 6 C C6 PIB . . . B 2 4.61 31.798 15.371 1 72.86 ? C6 PIB 1163 A 1 HETATM 7 O O1 PIB . . . B 2 3.61 33.952 14.699 1 72.79 ? O1 PIB 1163 A 1 HETATM 8 O O2 PIB . . . B 2 6.394 34.108 14.926 1 68.67 ? O2 PIB 1163 A 1 HETATM 9 O O3 PIB . . . B 2 7.618 34.009 17.467 1 69.33 ? O3 PIB 1163 A 1 HETATM 10 O O4 PIB . . . B 2 7.378 31.182 17.862 1 71.98 ? O4 PIB 1163 A 1 HETATM 11 O O5 PIB . . . B 2 5.684 29.719 16.127 1 70.66 ? O5 PIB 1163 A 1 HETATM 12 O O6 PIB . . . B 2 3.381 31.093 15.087 1 72.56 ? O6 PIB 1163 A 1 HETATM 13 P P1 PIB . . . B 2 2.053 34.253 15.02 1 72.13 ? P1 PIB 1163 A 1 HETATM 14 O O11 PIB . . . B 2 1.962 35.235 16.287 1 71.21 ? O11 PIB 1163 A 1 HETATM 15 O O12 PIB . . . B 2 1.325 32.976 15.306 1 72.4 ? O12 PIB 1163 A 1 HETATM 16 O O13 PIB . . . B 2 1.44 34.98 13.708 1 76.03 ? O13 PIB 1163 A 1 HETATM 17 P P3 PIB . . . B 2 7.91 34.2 19.038 1 67.6 ? P3 PIB 1163 A 1 HETATM 18 O O31 PIB . . . B 2 9.294 34.991 19.181 1 67.39 ? O31 PIB 1163 A 1 HETATM 19 O O32 PIB . . . B 2 8.05 32.886 19.707 1 66.44 ? O32 PIB 1163 A 1 HETATM 20 O O33 PIB . . . B 2 6.722 35.046 19.729 1 67.94 ? O33 PIB 1163 A 1 HETATM 21 C C7 PIB . . . B 2 0.046 35.247 13.907 1 79.28 ? C7 PIB 1163 A 1 HETATM 22 C C8 PIB . . . B 2 -0.539 35.936 12.656 1 79.27 ? C8 PIB 1163 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 1491 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #