data_2RC1
#
_model_server_result.job_id            '_hC7KSlQCm1YLQZLjiwnQQ' 
_model_server_result.datetime_utc      '2024-10-13 06:27:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2rc1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":400}' 
#
_entry.id    2RC1 
#
_exptl.entry_id    2RC1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2RC1 
_cell.length_a            50.858 
_cell.length_b            73.315 
_cell.length_c            103.801 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2RC1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NE2 
_struct_conn.ptnr1_label_comp_id            HIS 
_struct_conn.ptnr1_label_seq_id             173 
_struct_conn.ptnr1_auth_asym_id             X 
_struct_conn.ptnr1_auth_comp_id             HIS 
_struct_conn.ptnr1_auth_seq_id              175 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            FE 
_struct_conn.ptnr2_label_comp_id            HEM 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             X 
_struct_conn.ptnr2_auth_comp_id             HEM 
_struct_conn.ptnr2_auth_seq_id              400 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.183 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 150 n n 
CHA C4D HEM doub 151 n n 
CHA HHA HEM sing 152 n n 
CHB C4A HEM sing 153 n n 
CHB C1B HEM doub 154 n n 
CHB HHB HEM sing 155 n n 
CHC C4B HEM sing 156 n n 
CHC C1C HEM doub 157 n n 
CHC HHC HEM sing 158 n n 
CHD C4C HEM doub 159 n n 
CHD C1D HEM sing 160 n n 
CHD HHD HEM sing 161 n n 
C1A C2A HEM doub 162 n y 
C1A NA HEM sing 163 n y 
C2A C3A HEM sing 164 n y 
C2A CAA HEM sing 165 n n 
C3A C4A HEM doub 166 n y 
C3A CMA HEM sing 167 n n 
C4A NA HEM sing 168 n y 
CMA HMA HEM sing 169 n n 
CMA HMAA HEM sing 170 n n 
CMA HMAB HEM sing 171 n n 
CAA CBA HEM sing 172 n n 
CAA HAA HEM sing 173 n n 
CAA HAAA HEM sing 174 n n 
CBA CGA HEM sing 175 n n 
CBA HBA HEM sing 176 n n 
CBA HBAA HEM sing 177 n n 
CGA O1A HEM doub 178 n n 
CGA O2A HEM sing 179 n n 
C1B C2B HEM sing 180 n n 
C1B NB HEM sing 181 n n 
C2B C3B HEM doub 182 n n 
C2B CMB HEM sing 183 n n 
C3B C4B HEM sing 184 n n 
C3B CAB HEM sing 185 n n 
C4B NB HEM doub 186 n n 
CMB HMB HEM sing 187 n n 
CMB HMBA HEM sing 188 n n 
CMB HMBB HEM sing 189 n n 
CAB CBB HEM doub 190 n n 
CAB HAB HEM sing 191 n n 
CBB HBB HEM sing 192 n n 
CBB HBBA HEM sing 193 n n 
C1C C2C HEM sing 194 n y 
C1C NC HEM sing 195 n y 
C2C C3C HEM doub 196 n y 
C2C CMC HEM sing 197 n n 
C3C C4C HEM sing 198 n y 
C3C CAC HEM sing 199 n n 
C4C NC HEM sing 200 n y 
CMC HMC HEM sing 201 n n 
CMC HMCA HEM sing 202 n n 
CMC HMCB HEM sing 203 n n 
CAC CBC HEM doub 204 n n 
CAC HAC HEM sing 205 n n 
CBC HBC HEM sing 206 n n 
CBC HBCA HEM sing 207 n n 
C1D C2D HEM sing 208 n n 
C1D ND HEM doub 209 n n 
C2D C3D HEM doub 210 n n 
C2D CMD HEM sing 211 n n 
C3D C4D HEM sing 212 n n 
C3D CAD HEM sing 213 n n 
C4D ND HEM sing 214 n n 
CMD HMD HEM sing 215 n n 
CMD HMDA HEM sing 216 n n 
CMD HMDB HEM sing 217 n n 
CAD CBD HEM sing 218 n n 
CAD HAD HEM sing 219 n n 
CAD HADA HEM sing 220 n n 
CBD CGD HEM sing 221 n n 
CBD HBD HEM sing 222 n n 
CBD HBDA HEM sing 223 n n 
CGD O1D HEM doub 224 n n 
CGD O2D HEM sing 225 n n 
O2A H2A HEM sing 226 n n 
O2D H2D HEM sing 227 n n 
FE NA HEM sing 228 n n 
FE NB HEM sing 229 n n 
FE NC HEM sing 230 n n 
FE ND HEM sing 231 n n 
#
_atom_sites.entry_id                     2RC1 
_atom_sites.fract_transf_matrix[1][1]    0.019663 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01364 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009634 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM X 1 400 400 HEM HEM . 
C 3 285 X 1 2001 2001 285 285 . 
D 4 HOH X 1 2002 2002 HOH HOH . 
D 4 HOH X 2 2003 2003 HOH HOH . 
D 4 HOH X 3 2004 2004 HOH HOH . 
D 4 HOH X 4 2005 2005 HOH HOH . 
D 4 HOH X 5 2006 2006 HOH HOH . 
D 4 HOH X 6 2007 2007 HOH HOH . 
D 4 HOH X 7 2008 2008 HOH HOH . 
D 4 HOH X 8 2009 2009 HOH HOH . 
D 4 HOH X 9 2010 2010 HOH HOH . 
D 4 HOH X 10 2011 2011 HOH HOH . 
D 4 HOH X 11 2012 2012 HOH HOH . 
D 4 HOH X 12 2013 2013 HOH HOH . 
D 4 HOH X 13 2014 2014 HOH HOH . 
D 4 HOH X 14 2015 2015 HOH HOH . 
D 4 HOH X 15 2016 2016 HOH HOH . 
D 4 HOH X 16 2017 2017 HOH HOH . 
D 4 HOH X 17 2018 2018 HOH HOH . 
D 4 HOH X 18 2019 2019 HOH HOH . 
D 4 HOH X 19 2022 2022 HOH HOH . 
D 4 HOH X 20 2023 2023 HOH HOH . 
D 4 HOH X 21 2024 2024 HOH HOH . 
D 4 HOH X 22 2025 2025 HOH HOH . 
D 4 HOH X 23 2026 2026 HOH HOH . 
D 4 HOH X 24 2027 2027 HOH HOH . 
D 4 HOH X 25 2028 2028 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -15.031 0.165 1.455 1 4.97 ? CHA HEM 400 X 1 
HETATM 2 C CHB HEM . . . B 2 -10.807 0.599 -0.886 1 5.89 ? CHB HEM 400 X 1 
HETATM 3 C CHC HEM . . . B 2 -9.54 -3.886 0.464 1 3.39 ? CHC HEM 400 X 1 
HETATM 4 C CHD HEM . . . B 2 -13.384 -3.986 3.427 1 5.59 ? CHD HEM 400 X 1 
HETATM 5 C C1A HEM . . . B 2 -13.992 0.661 0.691 1 9.09 ? C1A HEM 400 X 1 
HETATM 6 C C2A HEM . . . B 2 -13.929 1.982 0.09 1 8.39 ? C2A HEM 400 X 1 
HETATM 7 C C3A HEM . . . B 2 -12.763 2.114 -0.566 1 8.72 ? C3A HEM 400 X 1 
HETATM 8 C C4A HEM . . . B 2 -12.051 0.86 -0.392 1 8.53 ? C4A HEM 400 X 1 
HETATM 9 C CMA HEM . . . B 2 -12.206 3.341 -1.364 1 4.9 ? CMA HEM 400 X 1 
HETATM 10 C CAA HEM . . . B 2 -15.04 3.028 0.233 1 10.24 ? CAA HEM 400 X 1 
HETATM 11 C CBA HEM . . . B 2 -14.773 3.972 1.405 1 11.75 ? CBA HEM 400 X 1 
HETATM 12 C CGA HEM . . . B 2 -15.996 4.847 1.565 1 15.96 ? CGA HEM 400 X 1 
HETATM 13 O O1A HEM . . . B 2 -16.764 4.715 2.573 1 15.57 ? O1A HEM 400 X 1 
HETATM 14 O O2A HEM . . . B 2 -16.203 5.708 0.66 1 16.09 ? O2A HEM 400 X 1 
HETATM 15 C C1B HEM . . . B 2 -10.19 -0.596 -0.771 1 5.55 ? C1B HEM 400 X 1 
HETATM 16 C C2B HEM . . . B 2 -9.043 -0.959 -1.533 1 5.37 ? C2B HEM 400 X 1 
HETATM 17 C C3B HEM . . . B 2 -8.645 -2.198 -1.157 1 7.95 ? C3B HEM 400 X 1 
HETATM 18 C C4B HEM . . . B 2 -9.587 -2.66 -0.157 1 6.1 ? C4B HEM 400 X 1 
HETATM 19 C CMB HEM . . . B 2 -8.423 -0.006 -2.533 1 3.92 ? CMB HEM 400 X 1 
HETATM 20 C CAB HEM . . . B 2 -7.457 -3.055 -1.704 1 8.5 ? CAB HEM 400 X 1 
HETATM 21 C CBB HEM . . . B 2 -6.733 -2.631 -2.784 1 12.21 ? CBB HEM 400 X 1 
HETATM 22 C C1C HEM . . . B 2 -10.407 -4.256 1.448 1 3.91 ? C1C HEM 400 X 1 
HETATM 23 C C2C HEM . . . B 2 -10.251 -5.412 2.286 1 5.03 ? C2C HEM 400 X 1 
HETATM 24 C C3C HEM . . . B 2 -11.335 -5.449 3.145 1 6.13 ? C3C HEM 400 X 1 
HETATM 25 C C4C HEM . . . B 2 -12.18 -4.293 2.826 1 7.08 ? C4C HEM 400 X 1 
HETATM 26 C CMC HEM . . . B 2 -9.031 -6.355 2.184 1 2 ? CMC HEM 400 X 1 
HETATM 27 C CAC HEM . . . B 2 -11.675 -6.465 4.302 1 2.73 ? CAC HEM 400 X 1 
HETATM 28 C CBC HEM . . . B 2 -11.323 -7.77 4.287 1 2 ? CBC HEM 400 X 1 
HETATM 29 C C1D HEM . . . B 2 -14.246 -2.961 3.105 1 6.99 ? C1D HEM 400 X 1 
HETATM 30 C C2D HEM . . . B 2 -15.626 -2.825 3.544 1 6.29 ? C2D HEM 400 X 1 
HETATM 31 C C3D HEM . . . B 2 -16.097 -1.512 2.906 1 7.23 ? C3D HEM 400 X 1 
HETATM 32 C C4D HEM . . . B 2 -14.982 -0.985 2.178 1 3.88 ? C4D HEM 400 X 1 
HETATM 33 C CMD HEM . . . B 2 -16.488 -3.779 4.395 1 4.44 ? CMD HEM 400 X 1 
HETATM 34 C CAD HEM . . . B 2 -17.482 -0.839 3.001 1 7.67 ? CAD HEM 400 X 1 
HETATM 35 C CBD HEM . . . B 2 -17.584 -0.108 4.343 1 8.85 ? CBD HEM 400 X 1 
HETATM 36 C CGD HEM . . . B 2 -18.862 0.722 4.359 1 9.55 ? CGD HEM 400 X 1 
HETATM 37 O O1D HEM . . . B 2 -19.882 0.417 3.667 1 11.12 ? O1D HEM 400 X 1 
HETATM 38 O O2D HEM . . . B 2 -18.844 1.734 5.051 1 10.23 ? O2D HEM 400 X 1 
HETATM 39 N NA HEM . . . B 2 -12.822 -0.012 0.37 1 8.72 ? NA HEM 400 X 1 
HETATM 40 N NB HEM . . . B 2 -10.534 -1.652 0.039 1 7.48 ? NB HEM 400 X 1 
HETATM 41 N NC HEM . . . B 2 -11.593 -3.605 1.779 1 6.36 ? NC HEM 400 X 1 
HETATM 42 N ND HEM . . . B 2 -13.92 -1.861 2.312 1 6.86 ? ND HEM 400 X 1 
HETATM 43 FE FE HEM . . . B 2 -12.22 -1.794 1.12 1 9.24 ? FE HEM 400 X 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           561 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           43 
#