data_2RCF # _model_server_result.job_id HggbnifnlH7mIOQztws9dQ _model_server_result.datetime_utc '2024-11-04 23:45:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rcf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":89}' # _entry.id 2RCF # _exptl.entry_id 2RCF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.22 _cell.angle_gamma 90 _cell.entry_id 2RCF _cell.length_a 61.933 _cell.length_b 86.78 _cell.length_c 35.214 _cell.Z_PDB 10 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RCF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2RCF _atom_sites.fract_transf_matrix[1][1] 0.016146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000062 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028398 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 CL A 1 89 4 CL CL . G 3 GOL B 1 89 1 GOL GOL . H 3 GOL B 1 90 3 GOL GOL . I 3 GOL C 1 89 2 GOL GOL . J 4 HOH A 1 90 11 HOH HOH . J 4 HOH A 2 91 16 HOH HOH . J 4 HOH A 3 92 20 HOH HOH . J 4 HOH A 4 93 27 HOH HOH . J 4 HOH A 5 94 30 HOH HOH . J 4 HOH A 6 95 34 HOH HOH . J 4 HOH A 7 96 36 HOH HOH . J 4 HOH A 8 97 49 HOH HOH . J 4 HOH A 9 98 51 HOH HOH . J 4 HOH A 10 99 52 HOH HOH . J 4 HOH A 11 100 55 HOH HOH . J 4 HOH A 12 101 58 HOH HOH . J 4 HOH A 13 102 62 HOH HOH . J 4 HOH A 14 103 65 HOH HOH . J 4 HOH A 15 104 73 HOH HOH . J 4 HOH A 16 105 85 HOH HOH . J 4 HOH A 17 106 95 HOH HOH . J 4 HOH A 18 107 102 HOH HOH . J 4 HOH A 19 108 109 HOH HOH . J 4 HOH A 20 109 112 HOH HOH . J 4 HOH A 21 110 124 HOH HOH . J 4 HOH A 22 111 127 HOH HOH . J 4 HOH A 23 112 131 HOH HOH . J 4 HOH A 24 113 136 HOH HOH . J 4 HOH A 25 114 138 HOH HOH . J 4 HOH A 26 115 147 HOH HOH . J 4 HOH A 27 116 151 HOH HOH . J 4 HOH A 28 117 154 HOH HOH . J 4 HOH A 29 118 155 HOH HOH . J 4 HOH A 30 119 158 HOH HOH . J 4 HOH A 31 120 160 HOH HOH . J 4 HOH A 32 121 163 HOH HOH . J 4 HOH A 33 122 179 HOH HOH . J 4 HOH A 34 123 181 HOH HOH . J 4 HOH A 35 124 185 HOH HOH . J 4 HOH A 36 125 189 HOH HOH . J 4 HOH A 37 126 191 HOH HOH . J 4 HOH A 38 127 197 HOH HOH . J 4 HOH A 39 128 207 HOH HOH . J 4 HOH A 40 129 212 HOH HOH . J 4 HOH A 41 130 213 HOH HOH . J 4 HOH A 42 131 220 HOH HOH . J 4 HOH A 43 132 223 HOH HOH . J 4 HOH A 44 133 224 HOH HOH . J 4 HOH A 45 134 245 HOH HOH . J 4 HOH A 46 135 249 HOH HOH . J 4 HOH A 47 136 269 HOH HOH . J 4 HOH A 48 137 270 HOH HOH . J 4 HOH A 49 138 271 HOH HOH . K 4 HOH B 1 91 7 HOH HOH . K 4 HOH B 2 92 8 HOH HOH . K 4 HOH B 3 93 10 HOH HOH . K 4 HOH B 4 94 12 HOH HOH . K 4 HOH B 5 95 14 HOH HOH . K 4 HOH B 6 96 15 HOH HOH . K 4 HOH B 7 97 28 HOH HOH . K 4 HOH B 8 98 31 HOH HOH . K 4 HOH B 9 99 33 HOH HOH . K 4 HOH B 10 100 35 HOH HOH . K 4 HOH B 11 101 41 HOH HOH . K 4 HOH B 12 102 44 HOH HOH . K 4 HOH B 13 103 45 HOH HOH . K 4 HOH B 14 104 50 HOH HOH . K 4 HOH B 15 105 53 HOH HOH . K 4 HOH B 16 106 57 HOH HOH . K 4 HOH B 17 107 59 HOH HOH . K 4 HOH B 18 108 67 HOH HOH . K 4 HOH B 19 109 69 HOH HOH . K 4 HOH B 20 110 71 HOH HOH . K 4 HOH B 21 111 74 HOH HOH . K 4 HOH B 22 112 75 HOH HOH . K 4 HOH B 23 113 76 HOH HOH . K 4 HOH B 24 114 81 HOH HOH . K 4 HOH B 25 115 82 HOH HOH . K 4 HOH B 26 116 90 HOH HOH . K 4 HOH B 27 117 91 HOH HOH . K 4 HOH B 28 118 98 HOH HOH . K 4 HOH B 29 119 100 HOH HOH . K 4 HOH B 30 120 101 HOH HOH . K 4 HOH B 31 121 105 HOH HOH . K 4 HOH B 32 122 107 HOH HOH . K 4 HOH B 33 123 115 HOH HOH . K 4 HOH B 34 124 121 HOH HOH . K 4 HOH B 35 125 125 HOH HOH . K 4 HOH B 36 126 132 HOH HOH . K 4 HOH B 37 127 133 HOH HOH . K 4 HOH B 38 128 137 HOH HOH . K 4 HOH B 39 129 143 HOH HOH . K 4 HOH B 40 130 146 HOH HOH . K 4 HOH B 41 131 164 HOH HOH . K 4 HOH B 42 132 167 HOH HOH . K 4 HOH B 43 133 171 HOH HOH . K 4 HOH B 44 134 174 HOH HOH . K 4 HOH B 45 135 176 HOH HOH . K 4 HOH B 46 136 180 HOH HOH . K 4 HOH B 47 137 192 HOH HOH . K 4 HOH B 48 138 194 HOH HOH . K 4 HOH B 49 139 195 HOH HOH . K 4 HOH B 50 140 201 HOH HOH . K 4 HOH B 51 141 204 HOH HOH . K 4 HOH B 52 142 210 HOH HOH . K 4 HOH B 53 143 216 HOH HOH . K 4 HOH B 54 144 227 HOH HOH . K 4 HOH B 55 145 229 HOH HOH . K 4 HOH B 56 146 238 HOH HOH . K 4 HOH B 57 147 248 HOH HOH . K 4 HOH B 58 148 252 HOH HOH . K 4 HOH B 59 149 260 HOH HOH . K 4 HOH B 60 150 272 HOH HOH . L 4 HOH C 1 90 17 HOH HOH . L 4 HOH C 2 91 22 HOH HOH . L 4 HOH C 3 92 23 HOH HOH . L 4 HOH C 4 93 26 HOH HOH . L 4 HOH C 5 94 38 HOH HOH . L 4 HOH C 6 95 40 HOH HOH . L 4 HOH C 7 96 43 HOH HOH . L 4 HOH C 8 97 54 HOH HOH . L 4 HOH C 9 98 61 HOH HOH . L 4 HOH C 10 99 63 HOH HOH . L 4 HOH C 11 100 78 HOH HOH . L 4 HOH C 12 101 79 HOH HOH . L 4 HOH C 13 102 92 HOH HOH . L 4 HOH C 14 103 96 HOH HOH . L 4 HOH C 15 104 97 HOH HOH . L 4 HOH C 16 105 110 HOH HOH . L 4 HOH C 17 106 111 HOH HOH . L 4 HOH C 18 107 113 HOH HOH . L 4 HOH C 19 108 117 HOH HOH . L 4 HOH C 20 109 119 HOH HOH . L 4 HOH C 21 110 120 HOH HOH . L 4 HOH C 22 111 122 HOH HOH . L 4 HOH C 23 112 128 HOH HOH . L 4 HOH C 24 113 141 HOH HOH . L 4 HOH C 25 114 152 HOH HOH . L 4 HOH C 26 115 153 HOH HOH . L 4 HOH C 27 116 157 HOH HOH . L 4 HOH C 28 117 162 HOH HOH . L 4 HOH C 29 118 175 HOH HOH . L 4 HOH C 30 119 182 HOH HOH . L 4 HOH C 31 120 187 HOH HOH . L 4 HOH C 32 121 193 HOH HOH . L 4 HOH C 33 122 209 HOH HOH . L 4 HOH C 34 123 214 HOH HOH . L 4 HOH C 35 124 215 HOH HOH . L 4 HOH C 36 125 217 HOH HOH . L 4 HOH C 37 126 218 HOH HOH . L 4 HOH C 38 127 219 HOH HOH . L 4 HOH C 39 128 226 HOH HOH . L 4 HOH C 40 129 228 HOH HOH . L 4 HOH C 41 130 230 HOH HOH . L 4 HOH C 42 131 231 HOH HOH . L 4 HOH C 43 132 232 HOH HOH . L 4 HOH C 44 133 234 HOH HOH . L 4 HOH C 45 134 235 HOH HOH . L 4 HOH C 46 135 240 HOH HOH . L 4 HOH C 47 136 247 HOH HOH . L 4 HOH C 48 137 250 HOH HOH . L 4 HOH C 49 138 253 HOH HOH . L 4 HOH C 50 139 263 HOH HOH . L 4 HOH C 51 140 265 HOH HOH . L 4 HOH C 52 141 267 HOH HOH . L 4 HOH C 53 142 268 HOH HOH . L 4 HOH C 54 143 93 HOH HOH . L 4 HOH C 55 144 178 HOH HOH . M 4 HOH D 1 89 9 HOH HOH . M 4 HOH D 2 90 13 HOH HOH . M 4 HOH D 3 91 24 HOH HOH . M 4 HOH D 4 92 37 HOH HOH . M 4 HOH D 5 93 39 HOH HOH . M 4 HOH D 6 94 42 HOH HOH . M 4 HOH D 7 95 46 HOH HOH . M 4 HOH D 8 96 47 HOH HOH . M 4 HOH D 9 97 60 HOH HOH . M 4 HOH D 10 98 64 HOH HOH . M 4 HOH D 11 99 68 HOH HOH . M 4 HOH D 12 100 72 HOH HOH . M 4 HOH D 13 101 80 HOH HOH . M 4 HOH D 14 102 83 HOH HOH . M 4 HOH D 15 103 84 HOH HOH . M 4 HOH D 16 104 88 HOH HOH . M 4 HOH D 17 105 89 HOH HOH . M 4 HOH D 18 106 94 HOH HOH . M 4 HOH D 19 107 103 HOH HOH . M 4 HOH D 20 108 108 HOH HOH . M 4 HOH D 21 109 123 HOH HOH . M 4 HOH D 22 110 126 HOH HOH . M 4 HOH D 23 111 135 HOH HOH . M 4 HOH D 24 112 140 HOH HOH . M 4 HOH D 25 113 144 HOH HOH . M 4 HOH D 26 114 148 HOH HOH . M 4 HOH D 27 115 150 HOH HOH . M 4 HOH D 28 116 156 HOH HOH . M 4 HOH D 29 117 161 HOH HOH . M 4 HOH D 30 118 166 HOH HOH . M 4 HOH D 31 119 170 HOH HOH . M 4 HOH D 32 120 173 HOH HOH . M 4 HOH D 33 121 177 HOH HOH . M 4 HOH D 34 122 183 HOH HOH . M 4 HOH D 35 123 184 HOH HOH . M 4 HOH D 36 124 199 HOH HOH . M 4 HOH D 37 125 200 HOH HOH . M 4 HOH D 38 126 202 HOH HOH . M 4 HOH D 39 127 203 HOH HOH . M 4 HOH D 40 128 205 HOH HOH . M 4 HOH D 41 129 208 HOH HOH . M 4 HOH D 42 130 221 HOH HOH . M 4 HOH D 43 131 225 HOH HOH . M 4 HOH D 44 132 233 HOH HOH . M 4 HOH D 45 133 236 HOH HOH . M 4 HOH D 46 134 237 HOH HOH . M 4 HOH D 47 135 239 HOH HOH . M 4 HOH D 48 136 242 HOH HOH . M 4 HOH D 49 137 243 HOH HOH . M 4 HOH D 50 138 244 HOH HOH . M 4 HOH D 51 139 251 HOH HOH . M 4 HOH D 52 140 254 HOH HOH . M 4 HOH D 53 141 256 HOH HOH . M 4 HOH D 54 142 258 HOH HOH . M 4 HOH D 55 143 266 HOH HOH . M 4 HOH D 56 144 273 HOH HOH . N 4 HOH E 1 89 5 HOH HOH . N 4 HOH E 2 90 6 HOH HOH . N 4 HOH E 3 91 18 HOH HOH . N 4 HOH E 4 92 19 HOH HOH . N 4 HOH E 5 93 21 HOH HOH . N 4 HOH E 6 94 25 HOH HOH . N 4 HOH E 7 95 29 HOH HOH . N 4 HOH E 8 96 32 HOH HOH . N 4 HOH E 9 97 48 HOH HOH . N 4 HOH E 10 98 56 HOH HOH . N 4 HOH E 11 99 66 HOH HOH . N 4 HOH E 12 100 70 HOH HOH . N 4 HOH E 13 101 77 HOH HOH . N 4 HOH E 14 102 86 HOH HOH . N 4 HOH E 15 103 87 HOH HOH . N 4 HOH E 16 104 99 HOH HOH . N 4 HOH E 17 105 104 HOH HOH . N 4 HOH E 18 106 106 HOH HOH . N 4 HOH E 19 107 114 HOH HOH . N 4 HOH E 20 108 116 HOH HOH . N 4 HOH E 21 109 118 HOH HOH . N 4 HOH E 22 110 129 HOH HOH . N 4 HOH E 23 111 130 HOH HOH . N 4 HOH E 24 112 134 HOH HOH . N 4 HOH E 25 113 139 HOH HOH . N 4 HOH E 26 114 142 HOH HOH . N 4 HOH E 27 115 145 HOH HOH . N 4 HOH E 28 116 149 HOH HOH . N 4 HOH E 29 117 159 HOH HOH . N 4 HOH E 30 118 165 HOH HOH . N 4 HOH E 31 119 168 HOH HOH . N 4 HOH E 32 120 169 HOH HOH . N 4 HOH E 33 121 172 HOH HOH . N 4 HOH E 34 122 186 HOH HOH . N 4 HOH E 35 123 188 HOH HOH . N 4 HOH E 36 124 190 HOH HOH . N 4 HOH E 37 125 196 HOH HOH . N 4 HOH E 38 126 198 HOH HOH . N 4 HOH E 39 127 206 HOH HOH . N 4 HOH E 40 128 211 HOH HOH . N 4 HOH E 41 129 222 HOH HOH . N 4 HOH E 42 130 241 HOH HOH . N 4 HOH E 43 131 246 HOH HOH . N 4 HOH E 44 132 255 HOH HOH . N 4 HOH E 45 133 257 HOH HOH . N 4 HOH E 46 134 259 HOH HOH . N 4 HOH E 47 135 264 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 3 -44.301 -3.72 -6.769 1 35.3 ? C1 GOL 89 C 1 HETATM 2 O O1 GOL . . . I 3 -45.138 -4.302 -7.748 1 36.04 ? O1 GOL 89 C 1 HETATM 3 C C2 GOL . . . I 3 -44.128 -4.679 -5.598 1 34.83 ? C2 GOL 89 C 1 HETATM 4 O O2 GOL . . . I 3 -44.156 -6.013 -6.055 1 35.92 ? O2 GOL 89 C 1 HETATM 5 C C3 GOL . . . I 3 -45.23 -4.431 -4.576 1 34.84 ? C3 GOL 89 C 1 HETATM 6 O O3 GOL . . . I 3 -45.195 -5.367 -3.517 1 35.23 ? O3 GOL 89 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #