data_2RCW # _model_server_result.job_id qJgQEO7ALdQ1QiRFq93h-Q _model_server_result.datetime_utc '2024-11-24 20:16:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rcw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 2RCW # _exptl.entry_id 2RCW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.372 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description trans-4-(7-carbamoyl-1H-benzimidazol-2-yl)-1-propylpiperidinium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2RCW _cell.length_a 94.166 _cell.length_b 94.166 _cell.length_c 68.38 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H22 N4 O' _chem_comp.formula_weight 286.372 _chem_comp.id AAI _chem_comp.mon_nstd_flag . _chem_comp.name trans-4-(7-carbamoyl-1H-benzimidazol-2-yl)-1-propylpiperidinium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-(1-Propyl-piperidin-4-yl)-1H-benzoimidazole-4-carboxylic acid amide' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 C10 AAI doub 1 n n C10 N11 AAI sing 2 n n C10 C6 AAI sing 3 n n C7 C6 AAI doub 4 n y C7 C8 AAI sing 5 n y C6 C3 AAI sing 6 n y C8 C9 AAI doub 7 n y C3 N2 AAI sing 8 n y C3 C4 AAI doub 9 n y N2 C1 AAI sing 10 n y C9 C4 AAI sing 11 n y C4 N5 AAI sing 12 n y C1 N5 AAI doub 13 n y C1 C13 AAI sing 14 n n C13 C18 AAI sing 15 n n C13 C14 AAI sing 16 n n C18 C17 AAI sing 17 n n C14 C15 AAI sing 18 n n C17 N16 AAI sing 19 n n C15 N16 AAI sing 20 n n N16 C19 AAI sing 21 n n C20 C19 AAI sing 22 n n C20 C21 AAI sing 23 n n N2 H2 AAI sing 24 n n C7 H7 AAI sing 25 n n C8 H8 AAI sing 26 n n C9 H9 AAI sing 27 n n N11 H111 AAI sing 28 n n N11 H112 AAI sing 29 n n C13 H13 AAI sing 30 n n C14 H141 AAI sing 31 n n C14 H142 AAI sing 32 n n C15 H151 AAI sing 33 n n C15 H152 AAI sing 34 n n C17 H171 AAI sing 35 n n C17 H172 AAI sing 36 n n C18 H181 AAI sing 37 n n C18 H182 AAI sing 38 n n C19 H191 AAI sing 39 n n C19 H192 AAI sing 40 n n C20 H201 AAI sing 41 n n C20 H202 AAI sing 42 n n C21 H211 AAI sing 43 n n C21 H212 AAI sing 44 n n C21 H213 AAI sing 45 n n # _atom_sites.entry_id 2RCW _atom_sites.fract_transf_matrix[1][1] 0.01062 _atom_sites.fract_transf_matrix[1][2] 0.006131 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AAI A 1 400 400 AAI AAI . C 3 HOH A 1 401 1 HOH WAT . C 3 HOH A 2 402 2 HOH WAT . C 3 HOH A 3 403 3 HOH WAT . C 3 HOH A 4 404 4 HOH WAT . C 3 HOH A 5 405 5 HOH WAT . C 3 HOH A 6 406 6 HOH WAT . C 3 HOH A 7 407 7 HOH WAT . C 3 HOH A 8 408 8 HOH WAT . C 3 HOH A 9 409 9 HOH WAT . C 3 HOH A 10 410 10 HOH WAT . C 3 HOH A 11 411 11 HOH WAT . C 3 HOH A 12 412 12 HOH WAT . C 3 HOH A 13 413 13 HOH WAT . C 3 HOH A 14 414 14 HOH WAT . C 3 HOH A 15 415 15 HOH WAT . C 3 HOH A 16 416 16 HOH WAT . C 3 HOH A 17 417 17 HOH WAT . C 3 HOH A 18 418 18 HOH WAT . C 3 HOH A 19 419 19 HOH WAT . C 3 HOH A 20 420 20 HOH WAT . C 3 HOH A 21 421 21 HOH WAT . C 3 HOH A 22 422 22 HOH WAT . C 3 HOH A 23 423 23 HOH WAT . C 3 HOH A 24 424 24 HOH WAT . C 3 HOH A 25 425 25 HOH WAT . C 3 HOH A 26 426 26 HOH WAT . C 3 HOH A 27 427 27 HOH WAT . C 3 HOH A 28 428 28 HOH WAT . C 3 HOH A 29 429 29 HOH WAT . C 3 HOH A 30 430 30 HOH WAT . C 3 HOH A 31 431 31 HOH WAT . C 3 HOH A 32 432 32 HOH WAT . C 3 HOH A 33 433 33 HOH WAT . C 3 HOH A 34 434 34 HOH WAT . C 3 HOH A 35 435 35 HOH WAT . C 3 HOH A 36 436 36 HOH WAT . C 3 HOH A 37 437 37 HOH WAT . C 3 HOH A 38 438 38 HOH WAT . C 3 HOH A 39 439 39 HOH WAT . C 3 HOH A 40 440 40 HOH WAT . C 3 HOH A 41 441 41 HOH WAT . C 3 HOH A 42 442 42 HOH WAT . C 3 HOH A 43 443 43 HOH WAT . C 3 HOH A 44 444 44 HOH WAT . C 3 HOH A 45 445 45 HOH WAT . C 3 HOH A 46 446 46 HOH WAT . C 3 HOH A 47 447 47 HOH WAT . C 3 HOH A 48 448 48 HOH WAT . C 3 HOH A 49 449 49 HOH WAT . C 3 HOH A 50 450 50 HOH WAT . C 3 HOH A 51 451 51 HOH WAT . C 3 HOH A 52 452 52 HOH WAT . C 3 HOH A 53 453 53 HOH WAT . C 3 HOH A 54 454 54 HOH WAT . C 3 HOH A 55 455 55 HOH WAT . C 3 HOH A 56 456 56 HOH WAT . C 3 HOH A 57 457 57 HOH WAT . C 3 HOH A 58 458 58 HOH WAT . C 3 HOH A 59 459 59 HOH WAT . C 3 HOH A 60 460 60 HOH WAT . C 3 HOH A 61 461 61 HOH WAT . C 3 HOH A 62 462 62 HOH WAT . C 3 HOH A 63 463 63 HOH WAT . C 3 HOH A 64 464 64 HOH WAT . C 3 HOH A 65 465 65 HOH WAT . C 3 HOH A 66 466 66 HOH WAT . C 3 HOH A 67 467 67 HOH WAT . C 3 HOH A 68 468 68 HOH WAT . C 3 HOH A 69 469 69 HOH WAT . C 3 HOH A 70 470 70 HOH WAT . C 3 HOH A 71 471 71 HOH WAT . C 3 HOH A 72 472 72 HOH WAT . C 3 HOH A 73 473 73 HOH WAT . C 3 HOH A 74 474 74 HOH WAT . C 3 HOH A 75 475 75 HOH WAT . C 3 HOH A 76 476 76 HOH WAT . C 3 HOH A 77 477 77 HOH WAT . C 3 HOH A 78 478 78 HOH WAT . C 3 HOH A 79 479 79 HOH WAT . C 3 HOH A 80 480 80 HOH WAT . C 3 HOH A 81 481 81 HOH WAT . C 3 HOH A 82 482 82 HOH WAT . C 3 HOH A 83 483 83 HOH WAT . C 3 HOH A 84 484 84 HOH WAT . C 3 HOH A 85 485 85 HOH WAT . C 3 HOH A 86 486 86 HOH WAT . C 3 HOH A 87 487 87 HOH WAT . C 3 HOH A 88 488 88 HOH WAT . C 3 HOH A 89 489 89 HOH WAT . C 3 HOH A 90 490 90 HOH WAT . C 3 HOH A 91 491 91 HOH WAT . C 3 HOH A 92 492 92 HOH WAT . C 3 HOH A 93 493 93 HOH WAT . C 3 HOH A 94 494 94 HOH WAT . C 3 HOH A 95 495 95 HOH WAT . C 3 HOH A 96 496 96 HOH WAT . C 3 HOH A 97 497 97 HOH WAT . C 3 HOH A 98 498 98 HOH WAT . C 3 HOH A 99 499 99 HOH WAT . C 3 HOH A 100 500 100 HOH WAT . C 3 HOH A 101 501 101 HOH WAT . C 3 HOH A 102 502 102 HOH WAT . C 3 HOH A 103 503 103 HOH WAT . C 3 HOH A 104 504 104 HOH WAT . C 3 HOH A 105 505 105 HOH WAT . C 3 HOH A 106 506 106 HOH WAT . C 3 HOH A 107 507 107 HOH WAT . C 3 HOH A 108 508 108 HOH WAT . C 3 HOH A 109 509 109 HOH WAT . C 3 HOH A 110 510 110 HOH WAT . C 3 HOH A 111 511 111 HOH WAT . C 3 HOH A 112 512 112 HOH WAT . C 3 HOH A 113 513 113 HOH WAT . C 3 HOH A 114 514 114 HOH WAT . C 3 HOH A 115 515 115 HOH WAT . C 3 HOH A 116 516 116 HOH WAT . C 3 HOH A 117 517 117 HOH WAT . C 3 HOH A 118 518 118 HOH WAT . C 3 HOH A 119 519 119 HOH WAT . C 3 HOH A 120 520 120 HOH WAT . C 3 HOH A 121 521 121 HOH WAT . C 3 HOH A 122 522 122 HOH WAT . C 3 HOH A 123 523 123 HOH WAT . C 3 HOH A 124 524 124 HOH WAT . C 3 HOH A 125 525 125 HOH WAT . C 3 HOH A 126 526 126 HOH WAT . C 3 HOH A 127 527 127 HOH WAT . C 3 HOH A 128 528 128 HOH WAT . C 3 HOH A 129 529 129 HOH WAT . C 3 HOH A 130 530 130 HOH WAT . C 3 HOH A 131 531 131 HOH WAT . C 3 HOH A 132 532 132 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AAI . . . B 2 -24.87 64.268 26.249 1 38.51 ? C1 AAI 400 A 1 HETATM 2 N N2 AAI . . . B 2 -24.879 65.187 25.277 1 35.97 ? N2 AAI 400 A 1 HETATM 3 C C3 AAI . . . B 2 -26.188 65.288 24.82 1 32.02 ? C3 AAI 400 A 1 HETATM 4 C C4 AAI . . . B 2 -26.961 64.35 25.606 1 30.74 ? C4 AAI 400 A 1 HETATM 5 N N5 AAI . . . B 2 -26.085 63.738 26.486 1 34.21 ? N5 AAI 400 A 1 HETATM 6 C C6 AAI . . . B 2 -26.818 66.074 23.824 1 28.37 ? C6 AAI 400 A 1 HETATM 7 C C7 AAI . . . B 2 -28.226 65.916 23.614 1 26.71 ? C7 AAI 400 A 1 HETATM 8 C C8 AAI . . . B 2 -28.978 64.992 24.389 1 23.6 ? C8 AAI 400 A 1 HETATM 9 C C9 AAI . . . B 2 -28.331 64.212 25.386 1 27.04 ? C9 AAI 400 A 1 HETATM 10 C C10 AAI . . . B 2 -26.09 67.064 22.975 1 27.49 ? C10 AAI 400 A 1 HETATM 11 N N11 AAI . . . B 2 -24.768 67.163 23.162 1 25.53 ? N11 AAI 400 A 1 HETATM 12 O O12 AAI . . . B 2 -26.638 67.778 22.138 1 29.88 ? O12 AAI 400 A 1 HETATM 13 C C13 AAI . . . B 2 -23.607 63.87 27.003 1 39.92 ? C13 AAI 400 A 1 HETATM 14 C C14 AAI . . . B 2 -23.163 65.011 27.942 1 44.78 ? C14 AAI 400 A 1 HETATM 15 C C15 AAI . . . B 2 -21.936 64.586 28.782 1 48.48 ? C15 AAI 400 A 1 HETATM 16 N N16 AAI . . . B 2 -22.197 63.354 29.587 1 49.34 ? N16 AAI 400 A 1 HETATM 17 C C17 AAI . . . B 2 -22.64 62.22 28.717 1 45.57 ? C17 AAI 400 A 1 HETATM 18 C C18 AAI . . . B 2 -23.853 62.572 27.82 1 41.3 ? C18 AAI 400 A 1 HETATM 19 C C19 AAI . . . B 2 -21.004 62.984 30.408 1 51.6 ? C19 AAI 400 A 1 HETATM 20 C C20 AAI . . . B 2 -19.714 62.633 29.623 1 54.56 ? C20 AAI 400 A 1 HETATM 21 C C21 AAI . . . B 2 -18.541 62.29 30.547 1 56.63 ? C21 AAI 400 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 21 #