data_2RD4 # _model_server_result.job_id RTwga0RZTckXtcCDSx1eGw _model_server_result.datetime_utc '2024-12-26 09:57:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rd4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 2RD4 # _exptl.entry_id 2RD4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2RD4 _cell.length_a 65.54 _cell.length_b 65.54 _cell.length_c 58.551 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RD4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA trimeric 3 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G 1 1 C 2 1 A,B,C,D,E,F,G 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 71 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 26 A CYS 27 1_555 A SG CYS 118 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 28 A CYS 29 1_555 A SG CYS 44 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 43 A CYS 44 1_555 A SG CYS 99 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf5 A SG CYS 50 A CYS 51 1_555 A SG CYS 92 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 A SG CYS 60 A CYS 61 1_555 A SG CYS 85 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 A SG CYS 78 A CYS 79 1_555 A SG CYS 90 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf8 B SG CYS 11 B CYS 11 1_555 B SG CYS 71 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf9 B SG CYS 26 B CYS 27 1_555 B SG CYS 118 B CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf10 B SG CYS 28 B CYS 29 1_555 B SG CYS 44 B CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 B SG CYS 43 B CYS 44 1_555 B SG CYS 99 B CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf12 B SG CYS 50 B CYS 51 1_555 B SG CYS 92 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf13 B SG CYS 60 B CYS 61 1_555 B SG CYS 85 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 B SG CYS 78 B CYS 79 1_555 B SG CYS 90 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A OD1 ASP 23 A ASP 24 1_555 D CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc2 A OD2 ASP 23 A ASP 24 1_555 D CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc3 A OD1 ASN 111 A ASN 112 1_555 D CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc4 D CA CA . A CA 401 1_555 F O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc5 D CA CA . A CA 401 1_555 B OD2 ASP 23 B ASP 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc6 D CA CA . A CA 401 1_555 B ND2 ASN 111 B ASN 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc7 D CA CA . A CA 401 1_555 G O HOH . B HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc8 B O TYR 27 B TYR 28 1_555 E CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc9 B O GLY 29 B GLY 30 1_555 E CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc10 B O GLY 31 B GLY 32 1_555 E CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc11 B OD1 ASP 48 B ASP 49 1_555 E CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc12 B OD2 ASP 48 B ASP 49 1_555 E CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2RD4 _atom_sites.fract_transf_matrix[1][1] 0.015258 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017079 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 401 401 CA CA . E 4 CA B 1 402 402 CA CA . F 5 HOH A 1 402 7 HOH HOH . F 5 HOH A 2 403 9 HOH HOH . F 5 HOH A 3 404 10 HOH HOH . F 5 HOH A 4 405 12 HOH HOH . F 5 HOH A 5 406 13 HOH HOH . F 5 HOH A 6 407 16 HOH HOH . F 5 HOH A 7 408 18 HOH HOH . F 5 HOH A 8 409 20 HOH HOH . F 5 HOH A 9 410 22 HOH HOH . F 5 HOH A 10 411 29 HOH HOH . F 5 HOH A 11 412 38 HOH HOH . F 5 HOH A 12 413 42 HOH HOH . F 5 HOH A 13 414 43 HOH HOH . F 5 HOH A 14 415 47 HOH HOH . F 5 HOH A 15 416 64 HOH HOH . F 5 HOH A 16 417 134 HOH HOH . F 5 HOH A 17 418 136 HOH HOH . F 5 HOH A 18 419 138 HOH HOH . F 5 HOH A 19 420 154 HOH HOH . F 5 HOH A 20 421 158 HOH HOH . F 5 HOH A 21 422 165 HOH HOH . F 5 HOH A 22 423 169 HOH HOH . F 5 HOH A 23 424 170 HOH HOH . F 5 HOH A 24 425 230 HOH HOH . F 5 HOH A 25 426 238 HOH HOH . F 5 HOH A 26 427 260 HOH HOH . F 5 HOH A 27 428 268 HOH HOH . F 5 HOH A 28 429 285 HOH HOH . F 5 HOH A 29 430 286 HOH HOH . F 5 HOH A 30 431 333 HOH HOH . G 5 HOH B 1 403 1 HOH HOH . G 5 HOH B 2 404 2 HOH HOH . G 5 HOH B 3 405 3 HOH HOH . G 5 HOH B 4 406 4 HOH HOH . G 5 HOH B 5 407 8 HOH HOH . G 5 HOH B 6 408 5 HOH HOH . G 5 HOH B 7 409 11 HOH HOH . G 5 HOH B 8 410 14 HOH HOH . G 5 HOH B 9 411 15 HOH HOH . G 5 HOH B 10 412 17 HOH HOH . G 5 HOH B 11 413 19 HOH HOH . G 5 HOH B 12 414 21 HOH HOH . G 5 HOH B 13 415 24 HOH HOH . G 5 HOH B 14 416 25 HOH HOH . G 5 HOH B 15 417 26 HOH HOH . G 5 HOH B 16 418 27 HOH HOH . G 5 HOH B 17 419 31 HOH HOH . G 5 HOH B 18 420 32 HOH HOH . G 5 HOH B 19 421 36 HOH HOH . G 5 HOH B 20 422 39 HOH HOH . G 5 HOH B 21 423 48 HOH HOH . G 5 HOH B 22 424 53 HOH HOH . G 5 HOH B 23 425 65 HOH HOH . G 5 HOH B 24 426 34 HOH HOH . G 5 HOH B 25 427 56 HOH HOH . G 5 HOH B 26 428 60 HOH HOH . G 5 HOH B 27 429 113 HOH HOH . G 5 HOH B 28 430 144 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -19.678 _atom_site.Cartn_y 20.202 _atom_site.Cartn_z -4.689 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #