data_2RD6 # _model_server_result.job_id MtuFiwPoRh0M0Fndt_MvOQ _model_server_result.datetime_utc '2024-11-24 03:19:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2rd6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":900}' # _entry.id 2RD6 # _exptl.entry_id 2RD6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.292 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2-(7-carbamoyl-1H-benzimidazol-2-yl)-2-methylpyrrolidinium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2RD6 _cell.length_a 94.537 _cell.length_b 94.537 _cell.length_c 68.502 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2RD6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z 1 0 0 0 -1 0 0 0 -1 0 163.742887 0 3 'crystal symmetry operation' 2_765 -y+2,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 141.8055 81.871444 0 4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 3_675 -x+y+1,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 163.742887 0 6 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 141.8055 81.871444 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H16 N4 O' _chem_comp.formula_weight 244.292 _chem_comp.id 78P _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-(7-carbamoyl-1H-benzimidazol-2-yl)-2-methylpyrrolidinium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Veliparib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C13 78P sing 1 n n C13 C17 78P sing 2 n n C13 N14 78P sing 3 n n C13 C8 78P sing 4 n n C17 C16 78P sing 5 n n N14 C15 78P sing 6 n n N7 C8 78P doub 7 n y N7 C3 78P sing 8 n y C8 N9 78P sing 9 n y C15 C16 78P sing 10 n n N9 C4 78P sing 11 n y C3 C2 78P doub 12 n y C3 C4 78P sing 13 n y C2 C1 78P sing 14 n y C4 C5 78P doub 15 n y C1 C6 78P doub 16 n y C5 C6 78P sing 17 n y C5 C10 78P sing 18 n n N11 C10 78P sing 19 n n C10 O12 78P doub 20 n n C6 H6 78P sing 21 n n C15 H151 78P sing 22 n n C15 H152 78P sing 23 n n C17 H171 78P sing 24 n n C17 H172 78P sing 25 n n C1 H1 78P sing 26 n n C2 H2 78P sing 27 n n N9 H9 78P sing 28 n n N11 H111 78P sing 29 n n N11 H112 78P sing 30 n n N14 H141 78P sing 31 n n C16 H161 78P sing 32 n n C16 H162 78P sing 33 n n C18 H181 78P sing 34 n n C18 H182 78P sing 35 n n C18 H183 78P sing 36 n n # _atom_sites.entry_id 2RD6 _atom_sites.fract_transf_matrix[1][1] 0.010578 _atom_sites.fract_transf_matrix[1][2] 0.006107 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012214 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 78P A 1 900 900 78P LIG . C 3 HOH A 1 901 1 HOH WAT . C 3 HOH A 2 902 2 HOH WAT . C 3 HOH A 3 903 3 HOH WAT . C 3 HOH A 4 904 4 HOH WAT . C 3 HOH A 5 905 5 HOH WAT . C 3 HOH A 6 906 6 HOH WAT . C 3 HOH A 7 907 7 HOH WAT . C 3 HOH A 8 908 8 HOH WAT . C 3 HOH A 9 909 9 HOH WAT . C 3 HOH A 10 910 10 HOH WAT . C 3 HOH A 11 911 11 HOH WAT . C 3 HOH A 12 912 12 HOH WAT . C 3 HOH A 13 913 13 HOH WAT . C 3 HOH A 14 914 14 HOH WAT . C 3 HOH A 15 915 15 HOH WAT . C 3 HOH A 16 916 16 HOH WAT . C 3 HOH A 17 917 17 HOH WAT . C 3 HOH A 18 918 18 HOH WAT . C 3 HOH A 19 919 19 HOH WAT . C 3 HOH A 20 920 20 HOH WAT . C 3 HOH A 21 921 21 HOH WAT . C 3 HOH A 22 922 22 HOH WAT . C 3 HOH A 23 923 23 HOH WAT . C 3 HOH A 24 924 24 HOH WAT . C 3 HOH A 25 925 25 HOH WAT . C 3 HOH A 26 926 26 HOH WAT . C 3 HOH A 27 927 27 HOH WAT . C 3 HOH A 28 928 28 HOH WAT . C 3 HOH A 29 929 29 HOH WAT . C 3 HOH A 30 930 30 HOH WAT . C 3 HOH A 31 931 31 HOH WAT . C 3 HOH A 32 932 32 HOH WAT . C 3 HOH A 33 933 33 HOH WAT . C 3 HOH A 34 934 34 HOH WAT . C 3 HOH A 35 935 35 HOH WAT . C 3 HOH A 36 936 36 HOH WAT . C 3 HOH A 37 937 37 HOH WAT . C 3 HOH A 38 938 38 HOH WAT . C 3 HOH A 39 939 39 HOH WAT . C 3 HOH A 40 940 40 HOH WAT . C 3 HOH A 41 941 41 HOH WAT . C 3 HOH A 42 942 42 HOH WAT . C 3 HOH A 43 943 43 HOH WAT . C 3 HOH A 44 944 44 HOH WAT . C 3 HOH A 45 945 45 HOH WAT . C 3 HOH A 46 946 46 HOH WAT . C 3 HOH A 47 947 47 HOH WAT . C 3 HOH A 48 948 48 HOH WAT . C 3 HOH A 49 949 49 HOH WAT . C 3 HOH A 50 950 50 HOH WAT . C 3 HOH A 51 951 51 HOH WAT . C 3 HOH A 52 952 52 HOH WAT . C 3 HOH A 53 953 53 HOH WAT . C 3 HOH A 54 954 54 HOH WAT . C 3 HOH A 55 955 55 HOH WAT . C 3 HOH A 56 956 56 HOH WAT . C 3 HOH A 57 957 57 HOH WAT . C 3 HOH A 58 958 58 HOH WAT . C 3 HOH A 59 959 59 HOH WAT . C 3 HOH A 60 960 60 HOH WAT . C 3 HOH A 61 961 61 HOH WAT . C 3 HOH A 62 962 62 HOH WAT . C 3 HOH A 63 963 63 HOH WAT . C 3 HOH A 64 964 64 HOH WAT . C 3 HOH A 65 965 65 HOH WAT . C 3 HOH A 66 966 66 HOH WAT . C 3 HOH A 67 967 67 HOH WAT . C 3 HOH A 68 968 68 HOH WAT . C 3 HOH A 69 969 69 HOH WAT . C 3 HOH A 70 970 70 HOH WAT . C 3 HOH A 71 971 71 HOH WAT . C 3 HOH A 72 972 72 HOH WAT . C 3 HOH A 73 973 73 HOH WAT . C 3 HOH A 74 974 74 HOH WAT . C 3 HOH A 75 975 75 HOH WAT . C 3 HOH A 76 976 76 HOH WAT . C 3 HOH A 77 977 77 HOH WAT . C 3 HOH A 78 978 78 HOH WAT . C 3 HOH A 79 979 79 HOH WAT . C 3 HOH A 80 980 80 HOH WAT . C 3 HOH A 81 981 81 HOH WAT . C 3 HOH A 82 982 82 HOH WAT . C 3 HOH A 83 983 83 HOH WAT . C 3 HOH A 84 984 84 HOH WAT . C 3 HOH A 85 985 85 HOH WAT . C 3 HOH A 86 986 86 HOH WAT . C 3 HOH A 87 987 87 HOH WAT . C 3 HOH A 88 988 88 HOH WAT . C 3 HOH A 89 989 89 HOH WAT . C 3 HOH A 90 990 90 HOH WAT . C 3 HOH A 91 991 91 HOH WAT . C 3 HOH A 92 992 92 HOH WAT . C 3 HOH A 93 993 93 HOH WAT . C 3 HOH A 94 994 94 HOH WAT . C 3 HOH A 95 995 95 HOH WAT . C 3 HOH A 96 996 96 HOH WAT . C 3 HOH A 97 997 97 HOH WAT . C 3 HOH A 98 998 98 HOH WAT . C 3 HOH A 99 999 99 HOH WAT . C 3 HOH A 100 1000 100 HOH WAT . C 3 HOH A 101 1001 101 HOH WAT . C 3 HOH A 102 1002 102 HOH WAT . C 3 HOH A 103 1003 103 HOH WAT . C 3 HOH A 104 1004 104 HOH WAT . C 3 HOH A 105 1005 105 HOH WAT . C 3 HOH A 106 1006 106 HOH WAT . C 3 HOH A 107 1007 107 HOH WAT . C 3 HOH A 108 1008 108 HOH WAT . C 3 HOH A 109 1009 109 HOH WAT . C 3 HOH A 110 1010 110 HOH WAT . C 3 HOH A 111 1011 111 HOH WAT . C 3 HOH A 112 1012 112 HOH WAT . C 3 HOH A 113 1013 113 HOH WAT . C 3 HOH A 114 1014 114 HOH WAT . C 3 HOH A 115 1015 115 HOH WAT . C 3 HOH A 116 1016 116 HOH WAT . C 3 HOH A 117 1017 117 HOH WAT . C 3 HOH A 118 1018 118 HOH WAT . C 3 HOH A 119 1019 119 HOH WAT . C 3 HOH A 120 1020 120 HOH WAT . C 3 HOH A 121 1021 121 HOH WAT . C 3 HOH A 122 1022 122 HOH WAT . C 3 HOH A 123 1023 123 HOH WAT . C 3 HOH A 124 1024 124 HOH WAT . C 3 HOH A 125 1025 125 HOH WAT . C 3 HOH A 126 1026 126 HOH WAT . C 3 HOH A 127 1027 127 HOH WAT . C 3 HOH A 128 1028 128 HOH WAT . C 3 HOH A 129 1029 129 HOH WAT . C 3 HOH A 130 1030 130 HOH WAT . C 3 HOH A 131 1031 131 HOH WAT . C 3 HOH A 132 1032 132 HOH WAT . C 3 HOH A 133 1033 133 HOH WAT . C 3 HOH A 134 1034 134 HOH WAT . C 3 HOH A 135 1035 135 HOH WAT . C 3 HOH A 136 1036 136 HOH WAT . C 3 HOH A 137 1037 137 HOH WAT . C 3 HOH A 138 1038 138 HOH WAT . C 3 HOH A 139 1039 139 HOH WAT . C 3 HOH A 140 1040 140 HOH WAT . C 3 HOH A 141 1041 141 HOH WAT . C 3 HOH A 142 1042 142 HOH WAT . C 3 HOH A 143 1043 143 HOH WAT . C 3 HOH A 144 1044 144 HOH WAT . C 3 HOH A 145 1045 145 HOH WAT . C 3 HOH A 146 1046 146 HOH WAT . C 3 HOH A 147 1047 147 HOH WAT . C 3 HOH A 148 1048 148 HOH WAT . C 3 HOH A 149 1049 149 HOH WAT . C 3 HOH A 150 1050 150 HOH WAT . C 3 HOH A 151 1051 151 HOH WAT . C 3 HOH A 152 1052 152 HOH WAT . C 3 HOH A 153 1053 153 HOH WAT . C 3 HOH A 154 1054 154 HOH WAT . C 3 HOH A 155 1055 155 HOH WAT . C 3 HOH A 156 1056 156 HOH WAT . C 3 HOH A 157 1057 157 HOH WAT . C 3 HOH A 158 1058 158 HOH WAT . C 3 HOH A 159 1059 159 HOH WAT . C 3 HOH A 160 1060 160 HOH WAT . C 3 HOH A 161 1061 161 HOH WAT . C 3 HOH A 162 1062 162 HOH WAT . C 3 HOH A 163 1063 163 HOH WAT . C 3 HOH A 164 1064 164 HOH WAT . C 3 HOH A 165 1065 165 HOH WAT . C 3 HOH A 166 1066 166 HOH WAT . C 3 HOH A 167 1067 167 HOH WAT . C 3 HOH A 168 1068 168 HOH WAT . C 3 HOH A 169 1069 169 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 78P . . . B 2 26.54 65.623 9.392 1 29.21 ? C4 78P 900 A 1 HETATM 2 C C5 78P . . . B 2 26.938 66.429 10.492 1 29.6 ? C5 78P 900 A 1 HETATM 3 C C6 78P . . . B 2 28.292 66.356 10.936 1 28.64 ? C6 78P 900 A 1 HETATM 4 C C8 78P . . . B 2 25.567 64.552 7.749 1 34.75 ? C8 78P 900 A 1 HETATM 5 C C10 78P . . . B 2 26.013 67.369 11.218 1 28.51 ? C10 78P 900 A 1 HETATM 6 C C13 78P . . . B 2 24.469 64.088 6.773 1 35.29 ? C13 78P 900 A 1 HETATM 7 C C15 78P . . . B 2 22.394 63.67 7.891 1 36.45 ? C15 78P 900 A 1 HETATM 8 C C17 78P . . . B 2 24.272 62.577 6.863 1 34.35 ? C17 78P 900 A 1 HETATM 9 C C1 78P . . . B 2 29.227 65.493 10.29 1 25.84 ? C1 78P 900 A 1 HETATM 10 C C2 78P . . . B 2 28.819 64.697 9.193 1 29.19 ? C2 78P 900 A 1 HETATM 11 C C3 78P . . . B 2 27.499 64.753 8.741 1 29.62 ? C3 78P 900 A 1 HETATM 12 N N7 78P . . . B 2 26.837 64.106 7.718 1 31.3 ? N7 78P 900 A 1 HETATM 13 N N9 78P . . . B 2 25.344 65.447 8.718 1 32.18 ? N9 78P 900 A 1 HETATM 14 N N11 78P . . . B 2 24.708 67.304 10.913 1 28.68 ? N11 78P 900 A 1 HETATM 15 O O12 78P . . . B 2 26.394 68.187 12.046 1 26.83 ? O12 78P 900 A 1 HETATM 16 N N14 78P . . . B 2 23.157 64.678 7.141 1 35.52 ? N14 78P 900 A 1 HETATM 17 C C16 78P . . . B 2 23.248 62.41 7.976 1 35.45 ? C16 78P 900 A 1 HETATM 18 C C18 78P . . . B 2 24.884 64.55 5.375 1 37.23 ? C18 78P 900 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 18 #